Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 2.2e-70 268.9 136 100.0
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 5.3e-48 194.5 137 78.1
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 4.9e-46 188.0 120 79.2
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 1.6e-44 183.0 122 77.9
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 2.1e-41 172.6 122 71.3
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 3.1e-40 168.7 144 62.5
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 8.4e-38 160.6 140 63.6
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 4.2e-37 158.3 123 67.5
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 3.9e-35 151.8 84 85.7
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 4.3e-34 148.3 131 60.3
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 4.3e-34 148.3 127 60.6
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 6.2e-33 144.4 137 55.5
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 6.2e-33 144.4 137 56.9
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 8.2e-33 144.1 147 53.7
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 3.1e-32 142.1 137 55.5
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 3.1e-32 142.1 128 58.6
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 1.2e-31 140.2 137 55.5
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 1.2e-31 140.2 137 55.5
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 2.0e-31 139.4 110 67.3
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 2.0e-31 139.4 110 67.3
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 4.5e-31 138.3 124 57.3
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 5.8e-31 137.9 124 57.3
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 7.6e-31 137.5 128 56.2
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 2.2e-30 136.0 117 57.3
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 6.5e-30 134.4 135 49.6
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 6.5e-30 134.4 124 56.5
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 8.4e-30 134.0 128 57.8
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 8.4e-30 134.0 78 79.5
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 1.1e-29 133.7 126 57.1
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 3.2e-29 132.1 111 59.5
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 3.2e-29 132.1 114 60.5
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 4.2e-29 131.7 78 76.9
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 1.6e-28 129.8 130 54.6
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.6e-28 129.8 84 72.6
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.7e-28 129.0 84 72.6
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 2.7e-28 129.0 150 53.3
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 4.6e-28 128.3 115 59.1
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 6.0e-28 127.9 129 54.3
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 7.9e-28 127.5 78 75.6
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.3e-27 126.7 84 71.4
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 1.8e-27 126.3 78 73.1
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 2.3e-27 125.9 112 57.1
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 2.3e-27 125.9 124 55.6
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 2.3e-27 125.9 148 51.4
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 2.3e-27 125.9 127 50.4
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 3.0e-27 125.6 140 50.7
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 3.0e-27 125.6 107 58.9
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 3.9e-27 125.2 117 55.6
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 6.7e-27 124.4 158 48.1
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 6.7e-27 124.4 117 56.4
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 6.7e-27 124.4 101 63.4
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 1.1e-26 123.6 77 74.0
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 1.1e-26 123.6 125 55.2
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 1.5e-26 123.2 133 51.1
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 1.5e-26 123.2 129 50.4
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 1.9e-26 122.9 133 52.6
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 1.9e-26 122.9 125 53.6
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.9e-26 122.9 78 70.5
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 4.3e-26 121.7 130 51.5
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 5.7e-26 121.3 78 70.5
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 7.4e-26 120.9 118 56.8
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 7.4e-26 120.9 129 50.4
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 9.7e-26 120.6 139 47.5
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 1.3e-25 120.2 114 56.1
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 1.3e-25 120.2 71 76.1
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 1.3e-25 120.2 110 54.5
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 1.3e-25 120.2 131 53.4
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 1.6e-25 119.8 71 77.5
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 1.6e-25 119.8 86 67.4
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 2.2e-25 119.4 71 77.5
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 2.2e-25 119.4 129 51.2
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 2.2e-25 119.4 86 66.3
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 2.2e-25 119.4 78 67.9
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 3.7e-25 118.6 107 53.3
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 3.7e-25 118.6 127 52.0
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 4.8e-25 118.2 141 52.5
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 4.8e-25 118.2 129 53.5
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 4.8e-25 118.2 139 46.8
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 4.8e-25 118.2 127 50.4
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 1.1e-24 117.1 105 55.2
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 5.3e-24 114.8 120 50.0
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 5.3e-24 114.8 137 48.2
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 5.3e-24 114.8 78 66.7
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 6.9e-24 114.4 78 64.1
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 6.9e-24 114.4 130 46.9
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 6.9e-24 114.4 116 51.7
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 1.5e-23 113.2 133 47.4
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 1.5e-23 113.2 111 55.9
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 1.5e-23 113.2 77 67.5
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.5e-23 113.2 128 50.8
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.5e-23 113.2 119 50.4
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 2.6e-23 112.5 125 52.0
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 3.4e-23 112.1 135 46.7
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 3.4e-23 112.1 135 46.7
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 4.5e-23 111.7 78 70.5
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 4.5e-23 111.7 110 56.4
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 5.9e-23 111.3 134 42.5
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 5.9e-23 111.3 119 49.6
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 7.6e-23 110.9 125 46.4
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 7.6e-23 110.9 129 49.6
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 7.6e-23 110.9 99 55.6
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 1.0e-22 110.5 78 66.7
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 1.3e-22 110.2 111 54.1
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 1.3e-22 110.2 111 54.1
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 1.3e-22 110.2 111 54.1
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.3e-22 110.2 88 61.4
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 1.7e-22 109.8 131 46.6
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 2.9e-22 109.0 132 47.0
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 6.5e-22 107.8 122 50.0
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 6.5e-22 107.8 88 60.2
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 8.5e-22 107.5 139 45.3
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.1e-21 107.1 123 46.3
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.4e-21 106.7 85 62.4
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 1.9e-21 106.3 129 45.0
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 2.5e-21 105.9 72 65.3
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 3.2e-21 105.5 67 68.7
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 4.2e-21 105.1 71 62.0
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 5.5e-21 104.8 117 49.6
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 5.5e-21 104.8 117 49.6
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 7.2e-21 104.4 75 65.3
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 3.6e-20 102.1 100 49.0
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 1.0e-19 100.5 77 61.0
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 1.4e-19 100.1 110 50.0
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 3.0e-19 99.0 85 57.6
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 5.1e-19 98.2 116 47.4
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 6.7e-19 97.8 76 60.5
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 8.8e-19 97.4 117 46.2
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 8.8e-19 97.4 117 46.2
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.5e-18 96.7 138 41.3
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 1.9e-18 96.3 77 59.7
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 3.3e-18 95.5 85 55.3
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 3.3e-18 95.5 106 47.2
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 4.3e-18 95.1 71 59.2
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 9.7e-18 94.0 117 46.2
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 9.7e-18 94.0 83 54.2
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 1.3e-17 93.6 140 36.4
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 6.3e-17 91.3 72 58.3
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 1.3e-14 83.6 80 50.0
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 6.3e-09 64.7 85 47.1
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 1.5e-07 60.1 118 33.9


User provided reference genes

Program Settings