Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 1.8e-106 389.4 218 100.0
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 2.9e-88 328.9 222 87.4
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 3.5e-62 242.3 221 65.2
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 7.9e-62 241.1 214 64.5
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 1.0e-61 240.7 221 66.1
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 1.3e-59 233.8 244 59.4
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 1.2e-57 227.3 216 62.5
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 1.0e-53 214.2 221 59.3
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 9.6e-52 207.6 245 53.5
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 2.2e-48 196.4 241 52.3
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 8.7e-45 184.5 241 50.6
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 1.9e-44 183.3 120 79.2
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 1.9e-44 183.3 233 51.9
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 2.5e-44 183.0 234 50.9
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 2.5e-44 183.0 234 50.9
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 5.7e-44 181.8 239 51.5
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 2.8e-43 179.5 215 56.3
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 3.7e-43 179.1 257 51.8
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 3.7e-43 179.1 257 51.4
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 4.5e-41 172.2 227 52.9
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 2.2e-40 169.9 232 48.3
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 3.8e-40 169.1 236 49.2
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 5.0e-40 168.7 227 53.3
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 5.5e-39 165.2 228 53.1
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 7.2e-39 164.9 250 45.6
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 9.3e-39 164.5 237 46.8
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 2.7e-38 162.9 233 45.1
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 3.6e-38 162.5 240 45.4
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 7.9e-38 161.4 239 48.5
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 1.3e-37 160.6 209 47.8
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 6.7e-37 158.3 223 46.6
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 8.7e-37 157.9 223 47.1
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 1.9e-36 156.8 235 48.5
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 2.5e-36 156.4 255 43.5
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 2.5e-36 156.4 157 55.4
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 3.3e-36 156.0 235 46.0
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 4.3e-36 155.6 238 43.7
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 5.7e-36 155.2 160 60.0
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 1.3e-35 154.1 195 47.2
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 1.3e-35 154.1 231 46.3
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 1.6e-35 153.7 249 42.6
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 2.8e-35 152.9 227 52.4
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 2.8e-35 152.9 223 48.0
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 4.8e-35 152.1 212 46.2
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 4.8e-35 152.1 222 45.9
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 6.3e-35 151.8 225 51.1
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 8.2e-35 151.4 235 47.2
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 1.8e-34 150.2 236 44.9
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 3.1e-34 149.4 225 50.2
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 4.1e-34 149.1 242 46.7
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 6.9e-34 148.3 246 44.7
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.2e-33 147.5 234 49.1
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 2.0e-33 146.7 213 44.1
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.6e-33 146.4 85 78.8
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 3.4e-33 146.0 217 45.6
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 4.5e-33 145.6 213 44.6
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 7.7e-33 144.8 170 56.5
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 7.7e-33 144.8 214 43.9
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 7.7e-33 144.8 154 52.6
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 7.7e-33 144.8 224 44.6
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.0e-32 144.4 216 43.5
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 1.0e-32 144.4 247 45.3
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 1.3e-32 144.1 231 42.0
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.7e-32 143.7 220 43.6
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 1.7e-32 143.7 212 42.0
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 2.2e-32 143.3 209 48.3
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.9e-32 142.9 217 45.6
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 3.8e-32 142.5 224 46.4
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.8e-32 142.5 234 47.9
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 6.5e-32 141.7 213 49.3
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 6.5e-32 141.7 204 46.1
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 6.5e-32 141.7 215 41.9
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 6.5e-32 141.7 244 38.5
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 8.5e-32 141.4 213 44.6
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 8.5e-32 141.4 213 44.6
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 1.1e-31 141.0 213 48.4
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 1.1e-31 141.0 192 52.1
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.4e-31 140.6 267 41.9
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 1.4e-31 140.6 235 47.7
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 2.5e-31 139.8 92 71.7
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 3.2e-31 139.4 257 45.9
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 3.2e-31 139.4 162 48.8
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 3.2e-31 139.4 84 73.8
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 4.2e-31 139.0 220 43.2
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 4.2e-31 139.0 212 47.6
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 4.2e-31 139.0 215 48.8
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 4.2e-31 139.0 206 42.7
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 5.5e-31 138.7 214 42.5
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 7.2e-31 138.3 237 43.9
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 9.4e-31 137.9 223 47.5
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.2e-30 137.5 221 43.9
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 2.1e-30 136.7 213 41.3
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 2.7e-30 136.3 234 46.6
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.6e-30 136.0 231 45.0
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 3.6e-30 136.0 198 44.4
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 6.1e-30 135.2 224 43.8
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 7.9e-30 134.8 213 42.7
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 7.9e-30 134.8 261 45.2
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 2.3e-29 133.3 84 75.0
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 3.0e-29 132.9 188 43.1
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 3.0e-29 132.9 188 43.1
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 6.7e-29 131.7 242 40.9
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 6.7e-29 131.7 94 67.0
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 8.8e-29 131.3 223 43.5
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 2.0e-28 130.2 209 45.9
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 5.7e-28 128.6 93 64.5
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 2.2e-27 126.7 234 39.7
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 2.8e-27 126.3 210 40.0
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 4.8e-27 125.6 256 38.3
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 8.2e-27 124.8 222 44.6
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 8.2e-27 124.8 214 39.3
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 8.2e-27 124.8 218 45.9
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 8.2e-27 124.8 218 43.1
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 1.1e-26 124.4 219 40.2
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 2.4e-26 123.2 79 65.8
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 5.3e-26 122.1 152 45.4
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 5.3e-26 122.1 152 45.4
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 9.1e-26 121.3 246 39.0
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 9.1e-26 121.3 216 44.4
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 1.2e-25 120.9 74 73.0
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 1.5e-25 120.6 153 46.4
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 1.5e-25 120.6 111 60.4
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 2.6e-25 119.8 214 42.1
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 3.4e-25 119.4 108 58.3
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 3.8e-24 115.9 86 66.3
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 8.5e-24 114.8 217 41.5
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 1.1e-23 114.4 212 38.7
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 4.2e-23 112.5 86 64.0
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 7.2e-23 111.7 213 38.0
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 1.6e-22 110.5 79 64.6
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 4.7e-22 109.0 105 49.5
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 1.8e-21 107.1 79 63.3
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 7.4e-20 101.7 106 53.8
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 2.8e-19 99.8 251 33.1
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 8.2e-19 98.2 222 32.9
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 8.2e-19 98.2 111 46.8
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.4e-18 97.4 77 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 5.9e-17 92.0 78 57.7
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.9e-16 89.7 189 46.0
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 4.7e-14 82.4 208 35.1
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 1.3e-08 64.3 154 34.4
SalBow1G0370 Salvia bowleyana HOM05D004801 ORTHO05D005747 3.2e-07 59.7 162 31.5
SalBow7G4186 Salvia bowleyana HOM05D000074 ORTHO05D000220 5.5e-07 58.9 178 30.3
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 7.2e-07 58.5 151 29.1


User provided reference genes

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