Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G293400 Glycine max HOM05D007603 ORTHO05D009604 7.3e-91 337.4 198 100.0
Glyma.12G207700 Glycine max HOM05D007603 ORTHO05D009604 2.1e-74 282.7 206 82.5
Phvul.005G099400 Phaseolus vulgaris HOM05D007603 ORTHO05D009604 2.2e-47 193.0 202 67.3
VMungo1080G0021 Vigna mungo HOM05D007603 ORTHO05D009604 4.6e-45 185.3 203 67.5
Lj3g0007744 Lotus japonicus HOM05D007603 ORTHO05D009604 2.0e-35 153.3 211 58.3
Psat5g274200 Pisum sativum HOM05D007603 ORTHO05D009604 1.5e-30 137.1 207 54.1
arahy.Tifrunner.gnm1.ann1.76DKB4 Arachis hypogaea HOM05D007603 ORTHO05D009604 1.9e-30 136.7 232 48.7
arahy.Tifrunner.gnm1.ann1.M59RYT Arachis hypogaea HOM05D007603 ORTHO05D009604 4.2e-30 135.6 232 48.3
Medtr2g090770 Medicago truncatula HOM05D007603 ORTHO05D009604 2.7e-29 132.9 208 49.5
Lalb_Chr14g0367241 Lupinus albus HOM05D007603 ORTHO05D009604 4.7e-29 132.1 227 48.9
TPR.G6485 Trifolium pratense HOM05D007603 ORTHO05D009604 5.2e-28 128.6 208 54.8
Haze_13265 Corylus avellana HOM05D007603 ORTHO05D009604 1.5e-27 127.1 231 51.9
CiPaw.03G182900 Carya illinoinensis HOM05D007603 ORTHO05D009604 2.0e-27 126.7 223 45.7
QL08p040785 Quercus lobata HOM05D007603 ORTHO05D009604 5.3e-25 118.6 232 50.0
Manes.13G141000 Manihot esculenta HOM05D007603 ORTHO05D009604 1.3e-23 114.0 244 41.0
Ciclev10017455m.g Citrus clementina HOM05D007603 ORTHO05D009604 1.9e-22 110.2 240 43.8
vmacro12353 Vaccinium macrocarpon HOM05D007603 ORTHO05D009604 3.2e-22 109.4 197 52.8
ClCG02G002280 Citrullus lanatus HOM05D007603 ORTHO05D009604 5.5e-22 108.6 230 43.9
Prupe.3G128600 Prunus persica HOM05D007603 ORTHO05D009604 7.2e-22 108.2 222 43.7
TWI23G0636 Tripterygium wilfordii HOM05D007603 ORTHO05D009604 1.2e-21 107.5 226 47.8
Thecc.02G187900 Theobroma cacao HOM05D007603 ORTHO05D009604 4.7e-21 105.5 238 40.8
MELO3C018861.2 Cucumis melo HOM05D007603 ORTHO05D009604 1.0e-20 104.4 234 38.5
FAN02G2478 Fragaria x ananassa HOM05D007603 ORTHO05D009604 1.4e-20 104.0 213 46.0
Actinidia10989 Actinidia chinensis HOM05D007603 ORTHO05D009604 4.0e-20 102.4 182 45.6
Dinv06842 Davidia involucrata HOM05D007603 ORTHO05D009604 5.2e-20 102.1 227 49.8
Dinv39835 Davidia involucrata HOM05D007603 ORTHO05D009604 1.5e-19 100.5 219 51.6
Sabra13G0062200 Salix brachista HOM05D007603 ORTHO05D009604 1.5e-19 100.5 249 38.2
Atru.chr6.2855 Acer truncatum HOM05D007603 ORTHO05D009604 2.0e-19 100.1 235 41.3
Nitab4.5_0002629g0010 Nicotiana tabacum HOM05D007603 ORTHO05D009604 3.4e-19 99.4 226 46.5
PGR042G1843 Punica granatum HOM05D007603 ORTHO05D009604 3.4e-19 99.4 212 42.9
Sabra13G0102000 Salix brachista HOM05D007603 ORTHO05D009604 3.4e-19 99.4 242 37.6
Potri.013G072200 Populus trichocarpa HOM05D007603 ORTHO05D009604 3.7e-18 95.9 245 37.6
Sed0002279 Sechium edule HOM05D007603 ORTHO05D009604 4.8e-18 95.5 224 39.3
Hma1.2p1_0002F.1_g002370 Hydrangea macrophylla HOM05D007603 ORTHO05D009604 6.3e-18 95.1 226 45.6
PGSC0003DMG400009384 Solanum tuberosum HOM05D007603 ORTHO05D009604 8.3e-18 94.7 232 47.4
CSS0037684 Camellia sinensis var. sinensis HOM05D007603 ORTHO05D009604 1.1e-17 94.4 223 43.9
Potri.013G120700 Populus trichocarpa HOM05D007603 ORTHO05D009604 1.4e-17 94.0 244 37.7
Sed0026242 Sechium edule HOM05D007603 ORTHO05D009604 1.4e-17 94.0 219 43.8
SalBow7G0820 Salvia bowleyana HOM05D007603 ORTHO05D009604 3.1e-17 92.8 212 41.0
TWI14G0603 Tripterygium wilfordii HOM05D007603 ORTHO05D009604 1.2e-16 90.9 225 42.2
Solyc07g150145.1 Solanum lycopersicum HOM05D007603 ORTHO05D009604 1.3e-15 87.4 240 38.3
Actinidia11119 Actinidia chinensis HOM05D007603 ORTHO05D009604 2.2e-15 86.7 206 44.7
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 2.9e-15 86.3 198 45.5
MSTRG.14321 Avicennia marina HOM05D007603 ORTHO05D009604 3.8e-15 85.9 202 39.6
Lsat_1_v5_gn_8_137160 Lactuca sativa HOM05D007603 ORTHO05D009604 5.0e-15 85.5 212 45.3
Oeu016901.1 Olea europaea HOM05D007603 ORTHO05D009604 4.2e-14 82.4 241 32.8
Aqoxy1G02256 Aquilegia oxysepala HOM05D007603 ORTHO05D009604 2.1e-13 80.1 240 39.6
Aa31sc35G40 Aethionema arabicum HOM05D007603 ORTHO05D009604 3.6e-13 79.3 237 37.6
Cc05_g07840 Coffea canephora HOM05D007603 ORTHO05D009604 3.6e-13 79.3 186 41.9
Gohir.A03G153900 Gossypium hirsutum HOM05D007603 ORTHO05D009604 3.6e-13 79.3 223 36.8
Oeu036085.1 Olea europaea HOM05D007603 ORTHO05D009604 4.7e-13 79.0 243 35.0
HanXRQChr08g0231781 Helianthus annuus HOM05D007603 ORTHO05D009604 6.1e-13 78.6 192 42.7
Carub.0005s2128 Capsella rubella HOM05D007603 ORTHO05D009604 1.0e-12 77.8 215 35.3
DCAR_013048 Daucus carota HOM05D007603 ORTHO05D009604 1.0e-12 77.8 220 37.7
Sopen07g027470 Solanum pennellii HOM05D007603 ORTHO05D009604 2.3e-12 76.6 237 43.5
FAN09G3062 Fragaria x ananassa HOM05D007603 ORTHO05D009604 3.0e-12 76.3 125 45.6
Gohir.D02G176900 Gossypium hirsutum HOM05D007603 ORTHO05D009604 3.0e-12 76.3 228 36.4
THA.LOC104825256 Tarenaya hassleriana HOM05D007603 ORTHO05D009604 3.0e-12 76.3 222 34.7
A07p22220 Brassica napus HOM05D007603 ORTHO05D009604 4.0e-12 75.9 213 35.7
BraA07t29901Z Brassica rapa HOM05D007603 ORTHO05D009604 6.8e-12 75.1 203 35.5
unitig_749.g13962 Utricularia gibba HOM05D007603 ORTHO05D009604 6.8e-12 75.1 200 33.5
TAR624G0387 Trochodendron aralioides HOM05D007603 ORTHO05D009604 8.8e-12 74.7 151 55.0
Nitab4.5_0006973g0020 Nicotiana tabacum HOM05D007603 ORTHO05D009604 2.6e-11 73.2 134 46.3
Thhalv10010720m.g Eutrema salsugineum HOM05D007603 ORTHO05D009604 3.4e-11 72.8 220 34.1
BcaB02g07727 Brassica carinata HOM05D007603 ORTHO05D009604 4.4e-11 72.4 215 34.4
AL5G35760 Arabidopsis lyrata HOM05D007603 ORTHO05D009604 5.7e-11 72.0 228 40.4
BcaC08g44692 Brassica carinata HOM05D007603 ORTHO05D009604 5.7e-11 72.0 203 36.0
C06p22280 Brassica napus HOM05D007603 ORTHO05D009604 5.7e-11 72.0 203 36.0
BolC6t37414H Brassica oleracea HOM05D007603 ORTHO05D009604 5.7e-11 72.0 203 36.0
CDE10G1214 Ceratophyllum demersum HOM05D007603 ORTHO05D009604 1.3e-10 70.9 147 38.1
CAN.G1543.2 Capsicum annuum HOM05D007603 ORTHO05D009604 2.2e-10 70.1 116 47.4
AT3G54680 Arabidopsis thaliana HOM05D007603 ORTHO05D009604 2.8e-10 69.7 223 39.5
Cpa.g.sc50.10 Carica papaya HOM05D007603 ORTHO05D009604 2.8e-10 69.7 270 37.4
FAN14G3046 Fragaria x ananassa HOM05D007603 ORTHO05D016291 8.3e-10 68.2 207 35.7
Nn1g04268 Nelumbo nucifera HOM05D007603 ORTHO05D009604 2.4e-09 66.6 250 41.6
Sp5g07770 Schrenkiella parvula HOM05D007603 ORTHO05D009604 5.4e-09 65.5 226 34.1
PSO541G0270 Papaver somniferum HOM05D007603 ORTHO05D009604 1.6e-08 63.9 212 33.5
CARHR164600 Cardamine hirsuta HOM05D007603 ORTHO05D009604 2.0e-08 63.5 218 42.7
THA.LOC104823514 Tarenaya hassleriana HOM05D007603 ORTHO05D009604 4.5e-08 62.4 212 34.9
CsaV3_7G003160 Cucumis sativus L. HOM05D007603 ORTHO05D009604 5.9e-08 62.0 141 37.6
A09p47630 Brassica napus HOM05D007603 ORTHO05D009604 7.7e-08 61.6 214 41.1
BcaC07g39795 Brassica carinata HOM05D007603 ORTHO05D009604 6.6e-07 58.5 214 41.1
AUR62036075 Chenopodium quinoa HOM05D007603 ORTHO05D009604 1.5e-06 57.4 126 40.5
C08p29830 Brassica napus HOM05D007603 ORTHO05D009604 1.9e-06 57.0 214 41.1
Hund01003 Selenicereus undatus HOM05D007603 ORTHO05D009604 1.9e-06 57.0 239 31.0
CDE10G0532 Ceratophyllum demersum HOM05D007603 ORTHO05D009604 2.5e-06 56.6 208 31.7
EL10Ac9g20838 Beta vulgaris HOM05D007603 ORTHO05D009604 5.6e-06 55.5 232 38.8
PSO675G7067 Papaver somniferum HOM05D007603 ORTHO05D009604 7.3e-06 55.1 218 34.9
BcaB01g00169 Brassica carinata HOM05D007603 ORTHO05D009604 9.5e-06 54.7 213 38.0


User provided reference genes

Program Settings