Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 0.0e+00 1087.4 549 100.0
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 3.5e-292 1007.7 549 92.7
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 1.1e-280 969.5 545 89.2
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 2.7e-276 954.9 549 87.2
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 2.2e-254 882.1 548 80.7
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 1.0e-251 873.2 555 81.1
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 3.3e-250 868.2 548 80.1
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 3.1e-248 861.7 556 80.0
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 4.6e-244 847.8 545 78.3
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 3.0e-235 818.5 551 75.5
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 7.9e-228 793.9 551 74.2
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.1e-220 767.7 548 70.3
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.0e-219 765.4 548 70.1
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.0e-218 762.7 547 69.8
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.0e-218 762.7 547 69.8
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 5.3e-208 728.0 544 69.9
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.1e-205 720.3 554 65.2
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.5e-205 719.2 556 65.8
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 6.1e-204 714.5 556 65.6
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.5e-202 709.9 547 67.3
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 1.1e-200 703.7 550 65.8
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 1.1e-200 703.7 573 63.0
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 2.4e-200 702.6 550 65.6
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 4.1e-200 701.8 550 66.0
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 1.7e-198 696.4 552 66.1
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 2.2e-198 696.0 547 65.3
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.1e-197 693.7 556 65.6
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.1e-197 693.7 546 65.8
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 2.7e-196 689.1 554 64.6
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 6.1e-196 688.0 549 65.8
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.0e-195 687.2 552 64.9
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 2.0e-194 682.9 544 64.9
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 7.5e-194 681.0 550 65.3
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 2.8e-193 679.1 546 64.5
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 6.3e-193 677.9 557 65.2
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 6.3e-193 677.9 564 62.1
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 5.4e-192 674.9 558 64.0
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 1.6e-191 673.3 552 64.5
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 3.5e-191 672.2 560 63.4
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 4.5e-191 671.8 553 63.5
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 1.0e-190 670.6 563 62.2
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 5.0e-190 668.3 549 62.7
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 3.3e-189 665.6 557 62.3
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.6e-188 663.3 564 62.4
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.6e-188 662.1 559 61.2
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 1.4e-187 660.2 564 61.3
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.8e-187 659.8 543 64.5
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 4.0e-187 658.7 561 61.7
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 2.6e-186 656.0 564 61.9
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 7.5e-186 654.4 548 62.8
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.2e-185 652.9 549 63.8
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.8e-185 652.5 547 64.2
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 8.3e-185 651.0 563 61.8
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.1e-184 648.7 549 63.6
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 5.4e-184 648.3 559 60.1
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 3.5e-183 645.6 545 63.1
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 5.9e-183 644.8 540 63.0
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 1.0e-182 644.0 547 62.0
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 1.3e-182 643.7 546 62.5
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.3e-182 643.7 521 64.5
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 6.6e-182 641.3 576 61.6
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.1e-181 640.6 567 61.9
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.1e-181 640.6 564 62.2
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 1.5e-181 640.2 546 61.2
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 2.5e-181 639.4 566 62.7
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 3.3e-181 639.0 567 61.7
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 4.3e-181 638.6 572 59.6
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 7.3e-181 637.9 567 62.3
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 1.2e-180 637.1 568 59.7
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.2e-180 637.1 486 67.5
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 1.6e-180 636.7 566 61.1
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 1.6e-180 636.7 567 62.1
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 2.1e-180 636.3 549 61.7
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 2.1e-180 636.3 566 61.1
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 2.1e-180 636.3 566 61.1
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 1.0e-179 634.0 561 59.7
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 1.0e-179 634.0 544 59.7
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 3.1e-179 632.5 553 61.8
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.2e-179 631.7 564 60.3
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 2.0e-178 629.8 563 62.0
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 2.0e-178 629.8 557 61.8
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.6e-178 629.4 549 61.9
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 9.8e-178 627.5 549 62.3
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.7e-177 626.7 506 64.8
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 2.2e-177 626.3 569 60.1
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 2.9e-177 625.9 564 59.9
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.7e-177 625.5 547 59.4
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 4.9e-177 625.2 549 62.1
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 4.9e-177 625.2 549 60.7
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 6.4e-177 624.8 547 60.3
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 1.1e-176 624.0 549 61.0
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 1.4e-176 623.6 553 60.8
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 1.9e-176 623.2 562 61.4
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 1.2e-175 620.5 566 60.6
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 7.8e-175 617.8 553 60.4
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.6e-174 614.8 576 56.9
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.6e-172 610.1 461 67.0
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 2.1e-172 609.8 563 59.5
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.8e-171 606.7 558 58.1
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 2.3e-171 606.3 558 58.8
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 4.0e-171 605.5 412 71.8
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 4.0e-171 605.5 564 57.1
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 1.3e-169 600.5 572 55.4
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 3.7e-169 599.0 565 59.1
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 4.1e-168 595.5 550 58.9
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 7.8e-167 591.3 561 58.6
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 5.8e-162 575.1 591 53.1
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 5.4e-160 568.5 453 64.2
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 2.3e-158 563.1 550 58.4
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 5.1e-158 562.0 454 64.8
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 1.6e-156 557.0 527 59.4
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 4.0e-155 552.4 555 55.7
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 5.8e-154 548.5 561 54.7
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 2.9e-153 546.2 402 68.9
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 3.8e-153 545.8 558 54.5
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 2.4e-152 543.1 548 54.0
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.6e-151 540.4 384 70.3
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 7.8e-151 538.1 556 54.9
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 2.1e-143 513.5 500 55.4
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 4.3e-141 505.8 337 73.0
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.4e-137 491.9 535 51.6
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 2.1e-135 486.9 548 52.2
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 4.9e-129 465.7 555 49.2
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 3.0e-126 456.4 301 74.8
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 2.2e-116 423.7 445 45.6
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.4e-115 421.0 479 53.9
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 7.2e-112 408.7 389 55.8
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 2.9e-97 360.1 485 47.6
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.1e-93 348.2 380 43.9
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 7.5e-85 318.9 319 57.1
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.8e-84 316.2 282 59.6
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 3.1e-83 313.5 190 76.3
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 2.7e-82 310.5 369 46.9
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.1e-75 288.5 210 65.2
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 8.6e-73 278.9 357 45.7
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.4e-67 259.6 155 78.7
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 4.9e-52 209.9 198 57.6
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 5.4e-43 179.9 225 51.1
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 7.1e-43 179.5 277 44.8
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 2.1e-39 167.9 285 40.0
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.1e-38 165.6 170 55.3
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 2.6e-29 134.4 96 64.6
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 2.9e-28 131.0 92 65.2
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 6.4e-28 129.8 471 24.4
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 3.2e-19 100.9 74 63.5
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 5.5e-19 100.1 70 65.7
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.6e-18 98.6 70 64.3
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 3.0e-17 94.4 78 57.7
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 6.7e-17 93.2 147 43.5
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 8.7e-17 92.8 115 42.6
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.5e-16 92.0 180 28.3
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 1.0e-12 79.3 51 72.5
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 2.7e-10 71.2 73 46.6
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.3e-09 68.2 75 53.3
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 3.0e-09 67.8 116 41.4
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 6.3e-07 60.1 50 58.0


User provided reference genes

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