Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G288500 Glycine max HOM05D000332 ORTHO05D212906 2.9e-50 202.2 158 100.0
Glyma.12G213200 Glycine max HOM05D000332 ORTHO05D000268 2.3e-23 112.8 150 79.3
VMungo1080G0827 Vigna mungo HOM05D000332 ORTHO05D000268 2.7e-19 99.4 148 56.8
Lj3g0011399 Lotus japonicus HOM05D000332 ORTHO05D000268 6.0e-19 98.2 155 56.8
Lalb_Chr14g0366221 Lupinus albus HOM05D000332 ORTHO05D000268 8.6e-18 94.4 151 49.7
Phvul.005G092700 Phaseolus vulgaris HOM05D000332 ORTHO05D000268 2.1e-16 89.7 149 67.1
Ca_18857_v3 Cicer arietinum L. HOM05D000332 ORTHO05D000268 3.6e-16 89.0 140 50.7
TPR.G25923 Trifolium pratense HOM05D000332 ORTHO05D000268 2.6e-14 82.8 140 49.3
arahy.Tifrunner.gnm1.ann1.4CX0EC Arachis hypogaea HOM05D000332 ORTHO05D000268 1.3e-13 80.5 72 79.2
arahy.Tifrunner.gnm1.ann1.PQR4B3 Arachis hypogaea HOM05D000332 ORTHO05D000268 1.3e-13 80.5 72 79.2
Medtr4g081100 Medicago truncatula HOM05D000332 ORTHO05D000268 2.2e-13 79.7 140 48.6
Psat7g162560 Pisum sativum HOM05D000332 ORTHO05D000268 2.9e-13 79.3 140 53.6
Lalb_Chr19g0134791 Lupinus albus HOM05D000332 ORTHO05D000268 3.7e-13 79.0 140 43.6
TPR.G19995 Trifolium pratense HOM05D000332 ORTHO05D000268 3.7e-13 79.0 46 82.6
Psat7g162520 Pisum sativum HOM05D000332 ORTHO05D000268 3.2e-12 75.9 140 47.1
Medtr2g083250 Medicago truncatula HOM05D000332 ORTHO05D000268 7.1e-12 74.7 46 78.3
TWI38G0909 Tripterygium wilfordii HOM05D000332 ORTHO05D000268 7.1e-12 74.7 144 36.8
TWI39G0865 Tripterygium wilfordii HOM05D000332 ORTHO05D000268 9.2e-12 74.3 142 38.7
MELO3C018095.2 Cucumis melo HOM05D000332 ORTHO05D000268 3.5e-11 72.4 44 72.7
Lalb_Chr01g0006081 Lupinus albus HOM05D000332 ORTHO05D000268 4.6e-11 72.0 147 43.5
arahy.Tifrunner.gnm1.ann1.SQCB4H Arachis hypogaea HOM05D000332 ORTHO05D000268 6.0e-11 71.6 44 75.0
Glyma.06G270000 Glycine max HOM05D000332 ORTHO05D000268 6.0e-11 71.6 41 82.9
Phvul.011G139300 Phaseolus vulgaris HOM05D000332 ORTHO05D000268 1.0e-10 70.9 42 78.6
Hund02119 Selenicereus undatus HOM05D000332 ORTHO05D000268 1.0e-10 70.9 45 71.1
arahy.Tifrunner.gnm1.ann1.HZU6G9 Arachis hypogaea HOM05D000332 ORTHO05D000268 1.3e-10 70.5 44 72.7
Haze_09633 Corylus avellana HOM05D000332 ORTHO05D000268 1.7e-10 70.1 42 76.2
DCAR_010028 Daucus carota HOM05D000332 ORTHO05D000268 1.7e-10 70.1 44 75.0
Dinv40725 Davidia involucrata HOM05D000332 ORTHO05D000268 1.7e-10 70.1 139 36.7
Psat5g252120 Pisum sativum HOM05D000332 ORTHO05D000268 1.7e-10 70.1 46 73.9
FvH4_3g21980 Fragaria vesca HOM05D000332 ORTHO05D000268 2.3e-10 69.7 44 72.7
FAN11G1895 Fragaria x ananassa HOM05D000332 ORTHO05D000268 2.3e-10 69.7 44 72.7
FAN16G2344 Fragaria x ananassa HOM05D000332 ORTHO05D000268 2.3e-10 69.7 44 72.7
FAN25G1274 Fragaria x ananassa HOM05D000332 ORTHO05D000268 2.3e-10 69.7 44 72.7
Glyma.12G134800 Glycine max HOM05D000332 ORTHO05D000268 2.3e-10 69.7 41 80.5
Prupe.4G205500 Prunus persica HOM05D000332 ORTHO05D000268 2.3e-10 69.7 46 69.6
Dinv22292 Davidia involucrata HOM05D000332 ORTHO05D000268 3.0e-10 69.3 51 68.6
CiPaw.11G185200 Carya illinoinensis HOM05D000332 ORTHO05D000268 3.9e-10 68.9 44 72.7
Migut.H01848 Erythranthe guttata HOM05D000332 ORTHO05D000268 3.9e-10 68.9 141 36.2
MELO3C025405.2 Cucumis melo HOM05D000332 ORTHO05D000268 5.1e-10 68.6 45 71.1
CsaV3_3G005310 Cucumis sativus L. HOM05D000332 ORTHO05D000268 5.1e-10 68.6 45 71.1
MD03G1209600 Malus domestica HOM05D000332 ORTHO05D000268 5.1e-10 68.6 46 65.2
VMungo1127G0123 Vigna mungo HOM05D000332 ORTHO05D000268 6.6e-10 68.2 136 50.0
Nn1g07061 Nelumbo nucifera HOM05D000332 ORTHO05D000268 8.6e-10 67.8 140 50.7
Sed0008825 Sechium edule HOM05D000332 ORTHO05D000268 8.6e-10 67.8 45 68.9
ClCG10G005610 Citrullus lanatus HOM05D000332 ORTHO05D000268 1.1e-09 67.4 45 68.9
vmacro11757 Vaccinium macrocarpon HOM05D000332 ORTHO05D000268 1.1e-09 67.4 141 41.8
Hma1.2p1_0938F.1_g239100 Hydrangea macrophylla HOM05D000332 ORTHO05D000268 1.5e-09 67.0 45 64.4
Sed0010785 Sechium edule HOM05D000332 ORTHO05D000268 1.5e-09 67.0 44 65.9
ClCG05G014640 Citrullus lanatus HOM05D000332 ORTHO05D000268 1.9e-09 66.6 44 68.2
CsaV3_3G023170 Cucumis sativus L. HOM05D000332 ORTHO05D000268 1.9e-09 66.6 43 67.4
CsaV3_UNG102750 Cucumis sativus L. HOM05D000332 ORTHO05D000268 1.9e-09 66.6 43 67.4
COL.COLO4_09590 Corchorus olitorius HOM05D000332 ORTHO05D000268 2.5e-09 66.2 140 40.7
Eucgr.F02422 Eucalyptus grandis HOM05D000332 ORTHO05D000268 2.5e-09 66.2 44 65.9
Lj3g0007688 Lotus japonicus HOM05D000332 ORTHO05D000268 2.5e-09 66.2 42 73.8
Nitab4.5_0000397g0230 Nicotiana tabacum HOM05D000332 ORTHO05D000268 2.5e-09 66.2 139 36.7
RcHm_v2.0_Chr5g0037831 Rosa chinensis HOM05D000332 ORTHO05D000268 2.5e-09 66.2 44 65.9
Cfa020402 Carpinus fangiana HOM05D000332 ORTHO05D000268 3.3e-09 65.9 44 65.9
CiPaw.12G127400 Carya illinoinensis HOM05D000332 ORTHO05D000268 3.3e-09 65.9 45 66.7
Duzib213G0705 Durio zibethinus HOM05D000332 ORTHO05D000268 3.3e-09 65.9 140 42.9
MD11G1224400 Malus domestica HOM05D000332 ORTHO05D000268 3.3e-09 65.9 44 68.2
Peaxi162Scf00450g00853 Petunia axillaris HOM05D000332 ORTHO05D000268 3.3e-09 65.9 139 36.7
Actinidia05117 Actinidia chinensis HOM05D000332 ORTHO05D000268 4.3e-09 65.5 51 60.8
CSS0040262 Camellia sinensis var. sinensis HOM05D000332 ORTHO05D000268 4.3e-09 65.5 144 34.0
Manes.15G075300 Manihot esculenta HOM05D000332 ORTHO05D000268 4.3e-09 65.5 42 73.8
Potri.011G135400 Populus trichocarpa HOM05D000332 ORTHO05D000268 4.3e-09 65.5 140 42.9
unitig_26.g9963 Utricularia gibba HOM05D000332 ORTHO05D000268 4.3e-09 65.5 45 62.2
FAN16G2572 Fragaria x ananassa HOM05D000332 ORTHO05D000268 5.6e-09 65.1 44 65.9
FAN21G0535 Fragaria x ananassa HOM05D000332 ORTHO05D000268 5.6e-09 65.1 44 65.9
Lsat_1_v5_gn_0_6661 Lactuca sativa HOM05D000332 ORTHO05D000268 5.6e-09 65.1 141 46.8
Actinidia09926 Actinidia chinensis HOM05D000332 ORTHO05D000268 7.3e-09 64.7 45 66.7
Oeu042919.2 Olea europaea HOM05D000332 ORTHO05D000268 7.3e-09 64.7 44 65.9
SGA_v2.0_scaffold9G05049 Striga asiatica HOM05D000332 ORTHO05D000268 7.3e-09 64.7 44 65.9
TAR624G0621 Trochodendron aralioides HOM05D000332 ORTHO05D000268 7.3e-09 64.7 150 36.7
Gohir.A04G020800 Gossypium hirsutum HOM05D000332 ORTHO05D000268 9.5e-09 64.3 44 63.6
Gohir.A13G140600 Gossypium hirsutum HOM05D000332 ORTHO05D000268 9.5e-09 64.3 43 65.1
unitig_749.g13969 Utricularia gibba HOM05D000332 ORTHO05D000268 9.5e-09 64.3 42 66.7
Gorai.009G426200 Gossypium raimondii HOM05D000332 ORTHO05D000268 1.2e-08 63.9 44 63.6
Nitab4.5_0003452g0010 Nicotiana tabacum HOM05D000332 ORTHO05D000268 1.2e-08 63.9 136 38.2
Eucgr.F03437 Eucalyptus grandis HOM05D000332 ORTHO05D000268 1.6e-08 63.5 140 40.7
Lj1P867T16 Lonicera japonica HOM05D000332 ORTHO05D000268 1.6e-08 63.5 45 62.2
Oeu062608.1 Olea europaea HOM05D000332 ORTHO05D000268 1.6e-08 63.5 44 68.2
Sc03g0008860 Simmondsia chinensis HOM05D000332 ORTHO05D000268 1.6e-08 63.5 44 65.9
EL10Ac4g07937 Beta vulgaris HOM05D000332 ORTHO05D000268 2.1e-08 63.2 137 50.4
ECA240G2287 Erigeron canadensis HOM05D000332 ORTHO05D000268 2.1e-08 63.2 42 66.7
Peaxi162Scf00000g08412 Petunia axillaris HOM05D000332 ORTHO05D000268 2.1e-08 63.2 148 37.2
QL08p012676 Quercus lobata HOM05D000332 ORTHO05D000268 2.1e-08 63.2 39 74.4
BcaB04g20645 Brassica carinata HOM05D000332 ORTHO05D000268 4.7e-08 62.0 44 68.2
BcaB07g33538 Brassica carinata HOM05D000332 ORTHO05D000268 4.7e-08 62.0 43 60.5
A06p02780 Brassica napus HOM05D000332 ORTHO05D000268 4.7e-08 62.0 43 60.5
Ciclev10009420m.g Citrus clementina HOM05D000332 ORTHO05D000268 4.7e-08 62.0 43 62.8
Sabra11G0121300 Salix brachista HOM05D000332 ORTHO05D000268 4.7e-08 62.0 51 60.8
BraA06t23485Z Brassica rapa HOM05D000332 ORTHO05D000268 6.2e-08 61.6 43 60.5
Gohir.D05G365900 Gossypium hirsutum HOM05D000332 ORTHO05D000268 6.2e-08 61.6 44 61.4
Gohir.D13G145400 Gossypium hirsutum HOM05D000332 ORTHO05D000268 6.2e-08 61.6 43 62.8
Gorai.013G163200 Gossypium raimondii HOM05D000332 ORTHO05D000268 6.2e-08 61.6 43 62.8
A05p28270 Brassica napus HOM05D000332 ORTHO05D000268 8.1e-08 61.2 42 69.0
BraA05t21709Z Brassica rapa HOM05D000332 ORTHO05D000268 8.1e-08 61.2 42 69.0
Cc05_g13360 Coffea canephora HOM05D000332 ORTHO05D000268 8.1e-08 61.2 43 60.5
ECA236G1726 Erigeron canadensis HOM05D000332 ORTHO05D000268 8.1e-08 61.2 141 38.3
Nn1g03607 Nelumbo nucifera HOM05D000332 ORTHO05D000268 8.1e-08 61.2 43 65.1
Nitab4.5_0003397g0070 Nicotiana tabacum HOM05D000332 ORTHO05D000268 8.1e-08 61.2 150 42.7
AL3G34430 Arabidopsis lyrata HOM05D000332 ORTHO05D000268 1.1e-07 60.8 42 66.7
AT3G20570 Arabidopsis thaliana HOM05D000332 ORTHO05D000268 1.1e-07 60.8 42 66.7
A01p34230 Brassica napus HOM05D000332 ORTHO05D000268 1.1e-07 60.8 44 65.9
C01p43620 Brassica napus HOM05D000332 ORTHO05D000268 1.1e-07 60.8 44 65.9
BolC1t04322H Brassica oleracea HOM05D001306 ORTHO05D001159 1.1e-07 60.8 44 65.9
BraA01t03522Z Brassica rapa HOM05D001306 ORTHO05D001159 1.1e-07 60.8 44 65.9
HanXRQChr13g0407691 Helianthus annuus HOM05D000332 ORTHO05D000268 1.1e-07 60.8 43 65.1
Lsat_1_v5_gn_7_108940 Lactuca sativa HOM05D000332 ORTHO05D000268 1.1e-07 60.8 44 54.5
Potri.001G419200 Populus trichocarpa HOM05D000332 ORTHO05D000268 1.1e-07 60.8 139 36.7
Sp1g37700 Schrenkiella parvula HOM05D000332 ORTHO05D000268 1.1e-07 60.8 47 55.3
C01p18660 Brassica napus HOM05D000332 ORTHO05D000268 1.4e-07 60.5 44 65.9
BolC1t01794H Brassica oleracea HOM05D000332 ORTHO05D000268 1.4e-07 60.5 44 65.9
PGR031G3234 Punica granatum HOM05D000332 ORTHO05D000268 1.4e-07 60.5 44 65.9
Thecc.07G050300 Theobroma cacao HOM05D000332 ORTHO05D000268 1.4e-07 60.5 139 45.3
MSTRG.6897 Avicennia marina HOM05D000332 ORTHO05D000268 1.8e-07 60.1 42 66.7
HanXRQChr11g0337901 Helianthus annuus HOM05D000332 ORTHO05D000268 1.8e-07 60.1 42 59.5
MSTRG.15166 Avicennia marina HOM05D000332 ORTHO05D000268 2.3e-07 59.7 45 57.8
Carub.0003s2055 Capsella rubella HOM05D000332 ORTHO05D000268 2.3e-07 59.7 42 66.7
CAN.G337.98 Capsicum annuum HOM05D000332 ORTHO05D000268 2.3e-07 59.7 139 30.2
Nitab4.5_0000092g0010 Nicotiana tabacum HOM05D000332 ORTHO05D000268 2.3e-07 59.7 142 40.1
Oeu021409.1 Olea europaea HOM05D000332 ORTHO05D000268 2.3e-07 59.7 142 30.3
Sabra16G0284700 Salix brachista HOM05D000332 ORTHO05D000268 2.3e-07 59.7 53 54.7
BcaC05g28314 Brassica carinata HOM05D000332 ORTHO05D000268 3.1e-07 59.3 42 66.7
BcaC09g50966 Brassica carinata HOM05D000332 ORTHO05D000268 3.1e-07 59.3 44 63.6
C05p43750 Brassica napus HOM05D000332 ORTHO05D000268 3.1e-07 59.3 42 66.7
BolC5t33091H Brassica oleracea HOM05D000332 ORTHO05D000268 3.1e-07 59.3 42 66.7
CSS0043089 Camellia sinensis var. sinensis HOM05D000332 ORTHO05D000268 3.1e-07 59.3 43 67.4
CARHR096360 Cardamine hirsuta HOM05D000332 ORTHO05D000268 3.1e-07 59.3 42 66.7
Thhalv10021550m.g Eutrema salsugineum HOM05D000332 ORTHO05D000268 3.1e-07 59.3 42 66.7
TAR626G1651 Trochodendron aralioides HOM05D000332 ORTHO05D000268 3.1e-07 59.3 45 57.8
BcaC08g43269 Brassica carinata HOM05D000332 ORTHO05D000268 4.0e-07 58.9 43 58.1
C06p06170 Brassica napus HOM05D000332 ORTHO05D000268 4.0e-07 58.9 43 58.1
BolC6t35728H Brassica oleracea HOM05D000332 ORTHO05D000268 4.0e-07 58.9 43 58.1
Aqoxy4G01972 Aquilegia oxysepala HOM05D000332 ORTHO05D000268 5.2e-07 58.5 53 54.7
Manes.03G128000 Manihot esculenta HOM05D000332 ORTHO05D000268 5.2e-07 58.5 42 61.9
PGSC0003DMG400001038 Solanum tuberosum HOM05D000332 ORTHO05D000268 5.2e-07 58.5 44 54.5
Aa31LG8G7380 Aethionema arabicum HOM05D000332 ORTHO05D000268 6.8e-07 58.2 40 65.0
BcaB04g19115 Brassica carinata HOM05D000332 ORTHO05D000268 6.8e-07 58.2 42 66.7
AUR62020532 Chenopodium quinoa HOM05D000332 ORTHO05D000268 6.8e-07 58.2 44 56.8
AUR62043222 Chenopodium quinoa HOM05D000332 ORTHO05D000268 6.8e-07 58.2 44 56.8
MBI18_g03010_MAGBIO Magnolia biondii HOM05D000332 ORTHO05D000268 6.8e-07 58.2 45 55.6
vmacro09741 Vaccinium macrocarpon HOM05D000332 ORTHO05D000268 6.8e-07 58.2 41 65.9
GSVIVG01001982001 Vitis vinifera HOM05D000332 ORTHO05D000268 6.8e-07 58.2 140 45.0
BcaB06g26122 Brassica carinata HOM05D000332 ORTHO05D000268 8.9e-07 57.8 42 61.9
Thhalv10011805m.g Eutrema salsugineum HOM05D000332 ORTHO05D000268 8.9e-07 57.8 43 58.1
TAR627G0079 Trochodendron aralioides HOM05D000332 ORTHO05D000268 8.9e-07 57.8 43 60.5
ATR0697G117 Amborella trichopoda HOM05D000332 ORTHO05D000268 1.2e-06 57.4 43 62.8
CANSAT11G0367 Cannabis sativa HOM05D000332 ORTHO05D000268 1.2e-06 57.4 44 59.1
Lsat_1_v5_gn_5_4941 Lactuca sativa HOM05D000332 ORTHO05D000268 1.2e-06 57.4 45 55.6
RhsimUnG0252400 Rhododendron simsii HOM05D000332 ORTHO05D000268 1.2e-06 57.4 43 62.8
A03p41820 Brassica napus HOM05D000332 ORTHO05D000268 1.5e-06 57.0 48 58.3
Duzib268G0217 Durio zibethinus HOM05D000332 ORTHO05D000268 1.5e-06 57.0 43 58.1
HanXRQChr05g0159191 Helianthus annuus HOM05D000332 ORTHO05D000268 1.5e-06 57.0 44 56.8
THA.LOC104817883 Tarenaya hassleriana HOM05D000332 ORTHO05D000268 1.5e-06 57.0 41 61.0
Actinidia10717 Actinidia chinensis HOM05D000332 ORTHO05D000268 2.6e-06 56.2 38 65.8
BcaC01g03548 Brassica carinata HOM05D000332 ORTHO05D000268 2.6e-06 56.2 42 64.3
C03p51200 Brassica napus HOM05D000332 ORTHO05D000268 2.6e-06 56.2 42 64.3
BolC3t17410H Brassica oleracea HOM05D000332 ORTHO05D000268 2.6e-06 56.2 42 64.3
BraA03t13335Z Brassica rapa HOM05D000332 ORTHO05D000268 2.6e-06 56.2 42 64.3
CDE05G3557 Ceratophyllum demersum HOM05D000332 ORTHO05D000268 2.6e-06 56.2 42 57.1
Atru.chr2.160 Acer truncatum HOM05D000332 ORTHO05D000268 4.4e-06 55.5 50 54.0
Atru.chr2.3236 Acer truncatum HOM05D000332 ORTHO05D000268 4.4e-06 55.5 43 58.1
A10p11270 Brassica napus HOM05D000332 ORTHO05D000268 5.8e-06 55.1 45 55.6
C09p43880 Brassica napus HOM05D000332 ORTHO05D000268 5.8e-06 55.1 45 55.6
BraA10t43219Z Brassica rapa HOM05D000332 ORTHO05D000268 5.8e-06 55.1 45 55.6
PSO541G3007 Papaver somniferum HOM05D000332 ORTHO05D000268 5.8e-06 55.1 41 56.1
PSO675G5483 Papaver somniferum HOM05D000332 ORTHO05D000268 5.8e-06 55.1 41 56.1
Cpa.g.sc97.50 Carica papaya HOM05D000332 ORTHO05D000268 7.6e-06 54.7 43 58.1
BcaB08g35746 Brassica carinata HOM05D000332 ORTHO05D000268 9.9e-06 54.3 45 53.3
BcaC04g20410 Brassica carinata HOM05D000332 ORTHO05D000268 9.9e-06 54.3 42 57.1
A02p10800 Brassica napus HOM05D000332 ORTHO05D000268 9.9e-06 54.3 43 60.5
BolC9t57270H Brassica oleracea HOM05D000332 ORTHO05D000268 9.9e-06 54.3 42 57.1
BraA02t06141Z Brassica rapa HOM05D000332 ORTHO05D000268 9.9e-06 54.3 43 60.5
Sp6g15930 Schrenkiella parvula HOM05D000332 ORTHO05D000268 9.9e-06 54.3 44 54.5


User provided reference genes

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