Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 8.1e-112 407.1 214 100.0
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 3.7e-104 381.7 214 95.8
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 5.9e-94 347.8 215 88.4
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 1.1e-87 327.0 215 85.1
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 3.1e-79 298.9 218 77.1
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 6.5e-77 291.2 218 75.7
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 8.8e-74 280.8 215 74.4
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 9.7e-73 277.3 218 72.0
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 1.4e-71 273.5 218 71.1
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 4.1e-71 271.9 215 71.2
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 8.5e-69 264.2 221 70.1
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 2.5e-68 262.7 222 69.8
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 2.5e-68 262.7 222 69.8
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 3.2e-68 262.3 225 66.7
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 1.2e-67 260.4 209 70.3
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 1.0e-66 257.3 209 69.4
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 1.8e-66 256.5 209 67.9
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 1.5e-65 253.4 187 74.3
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 1.5e-65 253.4 199 69.3
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 3.3e-65 252.3 216 69.0
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 3.3e-65 252.3 216 68.5
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 3.3e-65 252.3 216 69.0
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 5.7e-65 251.5 222 67.6
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 5.7e-65 251.5 221 67.4
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 2.8e-64 249.2 223 65.0
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 3.7e-64 248.8 246 62.2
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 4.8e-64 248.4 230 65.2
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 4.8e-64 248.4 212 67.5
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 4.8e-64 248.4 212 67.5
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 6.3e-64 248.1 225 64.9
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 8.2e-64 247.7 223 67.3
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 1.1e-63 247.3 209 67.9
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 1.4e-63 246.9 219 63.9
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 3.1e-63 245.7 221 65.6
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 4.1e-63 245.4 213 66.2
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 5.3e-63 245.0 212 67.0
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 7.0e-63 244.6 221 64.3
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 7.0e-63 244.6 219 66.2
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 9.1e-63 244.2 198 70.2
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 2.0e-62 243.0 213 66.2
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 5.9e-62 241.5 221 64.7
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 1.3e-61 240.4 214 67.8
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 1.3e-61 240.4 209 66.5
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 1.7e-61 240.0 231 62.8
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 1.7e-61 240.0 188 72.3
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 2.9e-61 239.2 188 72.3
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 3.8e-61 238.8 204 65.7
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 5.0e-61 238.4 228 63.2
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 6.5e-61 238.0 220 62.7
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 6.5e-61 238.0 210 66.2
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 8.5e-61 237.7 225 64.0
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 1.1e-60 237.3 178 71.9
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 1.5e-60 236.9 178 71.9
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 2.5e-60 236.1 192 71.9
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 3.2e-60 235.7 178 71.9
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 3.2e-60 235.7 178 71.9
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 3.2e-60 235.7 178 71.9
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 4.2e-60 235.3 216 63.0
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 9.4e-60 234.2 179 72.6
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 9.4e-60 234.2 211 65.4
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 9.4e-60 234.2 211 65.9
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 1.6e-59 233.4 178 72.5
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 2.1e-59 233.0 189 69.3
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 2.7e-59 232.6 179 72.1
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 3.6e-59 232.3 179 72.1
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 6.1e-59 231.5 220 61.8
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 1.0e-58 230.7 182 70.9
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 1.4e-58 230.3 210 64.8
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 2.3e-58 229.6 150 80.7
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 2.3e-58 229.6 193 69.4
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 5.2e-58 228.4 178 72.5
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 6.8e-58 228.0 193 64.8
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 1.2e-57 227.3 162 75.9
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 4.4e-57 225.3 220 63.2
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 5.7e-57 224.9 206 62.6
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 7.5e-57 224.6 194 66.0
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 2.8e-56 222.6 181 68.5
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 2.8e-56 222.6 156 79.5
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 3.7e-56 222.2 164 74.4
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 6.3e-56 221.5 214 62.6
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 3.1e-55 219.2 200 64.0
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 5.4e-55 218.4 171 70.8
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 9.1e-55 217.6 150 78.7
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 6.8e-50 201.4 227 57.7
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 2.0e-49 199.9 195 59.0
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 4.4e-49 198.7 226 58.0
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 1.7e-45 186.8 208 55.8
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 6.6e-45 184.9 215 54.0
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 7.3e-44 181.4 226 54.4
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 2.1e-43 179.9 151 65.6
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 1.0e-42 177.6 161 60.2
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 1.8e-39 166.8 169 60.4
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 1.2e-38 164.1 171 58.5
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 3.5e-38 162.5 118 73.7
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 2.5e-36 156.4 107 80.4
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 8.3e-32 141.4 102 70.6
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 3.9e-29 132.5 82 87.8
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 2.5e-28 129.8 82 86.6
BcaB07g33555 Brassica carinata HOM05D007184 ORTHO05D008987 7.5e-25 118.2 142 48.6
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 1.0e-21 107.8 73 78.1
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 6.6e-21 105.1 88 62.5
Thhalv10012149m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 8.6e-21 104.8 79 65.8
SEGI_35792 Sequoiadendron giganteum HOM05D007184 ORTHO05D008987 3.3e-20 102.8 129 45.7
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 8.9e-18 94.7 103 57.3
Lju3590C0T1 Lonicera japonica HOM05D007184 ORTHO05D008987 4.9e-16 89.0 59 83.1
Pp3c11_19690 Physcomitrium patens HOM05D007184 ORTHO05D008987 9.6e-12 74.7 111 38.7
FvH4_7g08050 Fragaria vesca HOM05D007184 ORTHO05D008987 4.0e-10 69.3 46 80.4
FAN01G2498 Fragaria x ananassa HOM05D007184 ORTHO05D008987 4.0e-10 69.3 46 80.4
CBR_g19283 Chara braunii HOM05D007184 ORTHO05D008987 6.4e-08 62.0 98 36.7
Mapoly0032s0044 Marchantia polymorpha HOM05D007184 ORTHO05D008987 8.4e-08 61.6 103 40.8
AagrBONN_evm.TU.Sc2ySwM_117.1655 Anthoceros agrestis HOM05D007184 ORTHO05D008987 9.3e-07 58.2 91 38.5


User provided reference genes

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