Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 2.6e-192 675.2 343 100.0
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 2.2e-175 619.0 339 92.9
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 2.1e-162 575.9 339 87.3
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 2.7e-157 558.9 339 84.7
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 2.2e-151 539.3 340 80.9
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 6.8e-145 517.7 341 77.4
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 4.9e-143 511.5 343 78.1
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 4.9e-143 511.5 343 78.1
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 1.7e-140 503.1 341 77.4
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 1.9e-139 499.6 340 75.9
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 2.3e-132 476.1 345 73.9
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 3.9e-116 422.2 343 66.2
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 5.1e-116 421.8 345 66.1
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 4.0e-113 412.1 336 64.3
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 6.5e-111 404.8 345 65.5
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 5.5e-110 401.7 335 64.5
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 7.1e-110 401.4 345 64.3
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 1.2e-109 400.6 345 63.5
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 1.6e-109 400.2 326 65.0
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 7.9e-109 397.9 344 63.1
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 6.7e-108 394.8 342 62.3
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 8.7e-108 394.4 342 62.0
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 1.5e-107 393.7 347 62.5
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 5.7e-107 391.7 344 62.5
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 2.2e-106 389.8 291 68.4
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 3.7e-106 389.0 341 61.6
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 3.7e-106 389.0 324 63.0
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 4.8e-106 388.7 324 63.0
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 6.3e-106 388.3 322 64.0
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 8.2e-106 387.9 324 63.0
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 1.4e-105 387.1 342 62.9
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 1.8e-105 386.7 343 62.7
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 1.2e-104 384.0 322 63.7
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 2.0e-104 383.3 280 68.2
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 2.6e-104 382.9 339 60.8
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 4.5e-104 382.1 340 60.6
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 5.0e-103 378.6 277 68.6
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 6.5e-103 378.3 345 59.4
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 1.1e-102 377.5 349 58.5
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 1.9e-102 376.7 284 67.3
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 5.5e-102 375.2 342 59.9
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 9.4e-102 374.4 346 60.1
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 1.2e-101 374.0 346 60.4
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 2.7e-101 372.9 343 58.6
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 6.1e-101 371.7 340 60.0
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 6.1e-101 371.7 284 66.5
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 7.9e-101 371.3 348 57.8
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 7.9e-101 371.3 297 64.0
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 3.0e-100 369.4 336 58.3
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 6.7e-100 368.2 289 65.1
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 8.8e-100 367.9 332 61.4
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 8.8e-100 367.9 335 59.4
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 2.5e-99 366.3 284 65.5
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 3.3e-99 365.9 311 63.3
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 5.7e-99 365.2 324 61.7
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 9.7e-99 364.4 309 63.4
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 2.2e-98 363.2 281 66.2
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 9.1e-97 357.8 315 61.3
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 1.5e-96 357.1 271 65.7
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 5.9e-96 355.1 342 56.7
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 2.9e-95 352.8 341 58.1
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 5.0e-95 352.1 322 58.7
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 6.5e-95 351.7 342 55.8
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 6.5e-95 351.7 269 68.0
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 4.2e-94 349.0 333 57.4
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 1.6e-93 347.1 360 54.2
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 2.0e-91 340.1 351 55.3
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 5.7e-91 338.6 347 55.6
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 5.7e-91 338.6 281 61.6
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 4.8e-90 335.5 309 59.5
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 1.1e-89 334.3 275 61.1
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 5.3e-89 332.0 348 55.5
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 7.0e-89 331.6 348 56.9
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 9.1e-89 331.3 348 57.2
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 3.8e-87 325.9 351 54.4
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 6.5e-87 325.1 346 52.9
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 4.2e-86 322.4 351 53.6
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 2.7e-85 319.7 348 52.9
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 8.0e-85 318.2 348 54.9
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 2.3e-84 316.6 347 55.0
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 2.3e-84 316.6 347 55.0
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 2.3e-84 316.6 349 55.6
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 8.8e-84 314.7 343 52.5
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 2.0e-83 313.5 350 52.6
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 9.7e-83 311.2 321 53.6
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 4.5e-80 302.4 352 52.6
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 3.2e-78 296.2 312 54.2
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 3.5e-72 276.2 311 46.0
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 7.7e-72 275.0 183 75.4
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 2.9e-71 273.1 203 67.5
Os05g0500400 Oryza sativa ssp. japonica HOM05D007317 ORTHO05D009299 2.1e-61 240.4 300 46.3
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 3.6e-61 239.6 285 46.0
SEGI_21971 Sequoiadendron giganteum HOM05D007317 ORTHO05D009299 4.4e-51 206.1 265 41.5
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 5.4e-49 199.1 205 55.6
FAN21G2436 Fragaria x ananassa HOM05D007317 ORTHO05D009299 1.9e-46 190.7 132 68.2
PGSC0003DMG400016049 Solanum tuberosum HOM05D007317 ORTHO05D009299 5.2e-44 182.6 120 70.8
Mapoly0015s0049 Marchantia polymorpha HOM05D007317 ORTHO05D009299 2.0e-35 154.1 268 36.2
Pp3c9_12310 Physcomitrium patens HOM05D007317 ORTHO05D009299 4.6e-32 142.9 265 32.8
BcaC09g49010 Brassica carinata HOM05D007317 ORTHO05D009299 3.3e-30 136.7 132 55.3
BolC3t18840H Brassica oleracea HOM05D007317 ORTHO05D009299 2.1e-29 134.0 245 39.6
BcaC01g02387 Brassica carinata HOM05D007317 ORTHO05D009299 8.9e-28 128.6 181 44.8
Dinv32111 Davidia involucrata HOM05D007317 ORTHO05D009299 2.9e-26 123.6 114 57.9
MD03G1212500 Malus domestica HOM05D007317 ORTHO05D009299 5.6e-22 109.4 125 47.2
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 1.1e-20 105.1 272 26.8
BcaB02g11442 Brassica carinata HOM05D007317 ORTHO05D009299 6.2e-13 79.3 104 41.3
Cre08.g369000 Chlamydomonas reinhardtii HOM05D007317 ORTHO05D009299 1.5e-11 74.7 237 25.3


User provided reference genes

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