Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 1.3e-52 209.5 114 100.0
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 8.9e-49 196.8 112 95.5
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 1.2e-45 186.4 113 91.2
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 2.3e-44 182.2 113 88.5
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 3.9e-44 181.4 112 84.8
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 5.0e-44 181.0 112 85.7
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 1.1e-43 179.9 112 84.8
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 5.6e-43 177.6 112 85.7
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 9.5e-43 176.8 113 86.7
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 9.5e-43 176.8 114 81.6
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 1.2e-42 176.4 112 82.1
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.6e-42 176.0 112 84.8
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 1.6e-42 176.0 112 84.8
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 78.9
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 4.7e-42 174.5 112 83.9
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 6.2e-42 174.1 112 81.2
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 6.2e-42 174.1 114 81.6
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 6.2e-42 174.1 114 78.9
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 6.2e-42 174.1 114 79.8
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 8.1e-42 173.7 112 83.0
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.1e-41 173.3 112 82.1
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.1e-41 173.3 112 81.2
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 1.1e-41 173.3 112 81.2
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 1.4e-41 172.9 112 80.4
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 1.4e-41 172.9 113 82.3
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 1.4e-41 172.9 113 85.0
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 2.3e-41 172.2 112 80.4
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 4.0e-41 171.4 112 80.4
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 78.1
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 4.0e-41 171.4 112 79.5
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 6.8e-41 170.6 110 81.8
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 6.8e-41 170.6 112 79.5
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 6.8e-41 170.6 112 79.5
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 8.9e-41 170.2 112 78.6
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 8.9e-41 170.2 112 79.5
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 1.2e-40 169.9 114 80.7
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 1.5e-40 169.5 112 79.5
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 2.0e-40 169.1 112 78.6
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 2.6e-40 168.7 112 79.5
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 3.4e-40 168.3 112 79.5
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 4.4e-40 167.9 112 78.6
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 4.4e-40 167.9 112 78.6
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 5.8e-40 167.5 112 78.6
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 5.8e-40 167.5 112 78.6
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 7.5e-40 167.2 114 75.4
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 7.5e-40 167.2 112 79.5
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.3e-39 166.4 112 78.6
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 1.7e-39 166.0 112 80.4
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 2.9e-39 165.2 113 79.6
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 2.9e-39 165.2 112 76.8
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 3.7e-39 164.9 113 78.8
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 3.7e-39 164.9 114 75.4
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 4.9e-39 164.5 112 77.7
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 4.9e-39 164.5 113 77.9
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 4.9e-39 164.5 113 77.9
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.9e-39 164.5 113 77.9
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.9e-39 164.5 113 77.9
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 4.9e-39 164.5 113 77.9
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 4.9e-39 164.5 114 75.4
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 6.4e-39 164.1 114 75.4
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.4e-39 164.1 112 75.0
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.4e-39 164.1 112 75.0
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 1.1e-38 163.3 110 78.2
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 1.4e-38 162.9 112 76.8
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 1.4e-38 162.9 112 75.9
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 1.9e-38 162.5 110 77.3
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 3.2e-38 161.8 112 77.7
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 3.2e-38 161.8 112 77.7
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 3.2e-38 161.8 112 76.8
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 4.1e-38 161.4 111 75.7
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 4.1e-38 161.4 113 77.0
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 5.4e-38 161.0 112 78.6
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 5.4e-38 161.0 110 77.3
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 5.4e-38 161.0 110 77.3
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 5.4e-38 161.0 112 76.8
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 5.4e-38 161.0 112 76.8
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 1.2e-37 159.8 104 83.7
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 1.2e-37 159.8 108 76.9
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 1.2e-37 159.8 106 80.2
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 1.6e-37 159.5 112 75.0
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.6e-37 159.5 112 75.9
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.6e-37 159.5 112 75.9
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 1.6e-37 159.5 112 75.9
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 2.1e-37 159.1 111 75.7
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 2.1e-37 159.1 112 73.2
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 2.1e-37 159.1 113 76.1
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 2.1e-37 159.1 112 76.8
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 2.7e-37 158.7 111 75.7
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 6.0e-37 157.5 112 74.1
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 7.8e-37 157.1 112 73.2
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 1.3e-36 156.4 111 74.8
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 3.0e-36 155.2 112 75.0
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 3.0e-36 155.2 112 72.3
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 1.1e-35 153.3 112 72.3
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 1.9e-35 152.5 140 62.9
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 2.5e-35 152.1 114 71.1
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 7.3e-35 150.6 113 71.7
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 1.2e-34 149.8 112 72.3
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 1.2e-34 149.8 112 72.3
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 1.2e-34 149.8 112 72.3
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 1.6e-34 149.4 104 77.9
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 2.1e-34 149.1 143 60.1
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 2.8e-34 148.7 112 73.2
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 2.8e-34 148.7 112 72.3
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 2.8e-34 148.7 112 71.4
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.6e-34 148.3 144 61.1
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 4.7e-34 147.9 114 71.1
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 4.7e-34 147.9 114 71.1
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 6.2e-34 147.5 109 73.4
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 6.2e-34 147.5 112 71.4
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 6.2e-34 147.5 112 70.5
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 4.4e-32 141.4 80 91.2
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 5.8e-32 141.0 114 67.5
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.4e-30 136.3 77 90.9
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 1.4e-30 136.3 80 87.5
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 3.2e-30 135.2 77 92.2
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 5.4e-30 134.4 92 81.5
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 7.1e-30 134.0 84 83.3
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.5e-29 131.7 91 75.8
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 1.0e-28 130.2 77 87.0
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 1.3e-28 129.8 83 81.9
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 1.3e-28 129.8 83 81.9
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 1.1e-27 126.7 107 63.6
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 2.5e-27 125.6 98 70.4
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.4e-25 119.0 73 83.6
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 6.9e-25 117.5 77 81.8
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 5.8e-24 114.4 65 89.2
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 1.7e-23 112.8 77 74.0
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 2.7e-21 105.5 106 50.9
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 3.5e-21 105.1 110 53.6
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 1.5e-19 99.8 72 75.0
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 4.3e-19 98.2 103 53.4
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 4.3e-19 98.2 104 54.8
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 8.1e-18 94.0 112 50.9
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 5.3e-17 91.3 75 65.3
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 9.0e-17 90.5 109 46.8
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 5.8e-16 87.8 59 76.3
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 9.9e-16 87.0 75 62.7
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 9.9e-16 87.0 62 72.6
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 2.9e-15 85.5 106 48.1
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.4e-14 82.4 100 51.0
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 4.2e-14 81.6 86 51.2
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 2.7e-13 79.0 108 48.1
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 3.5e-13 78.6 51 80.4
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 1.3e-12 76.6 43 88.4
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.3e-12 76.6 45 84.4
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 1.3e-12 76.6 95 50.5
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.0e-12 75.5 57 73.7
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 5.1e-12 74.7 104 45.2
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 6.7e-12 74.3 50 76.0
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 1.1e-11 73.6 43 83.7
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 5.6e-11 71.2 51 74.5
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 2.1e-10 69.3 91 51.6
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 3.6e-10 68.6 43 79.1
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 6.2e-10 67.8 62 54.8
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 6.2e-10 67.8 110 39.1
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 4.0e-09 65.1 53 67.9
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.5e-08 63.2 92 47.8
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 3.4e-08 62.0 58 60.3
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 9.9e-08 60.5 97 45.4
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 8.4e-07 57.4 59 47.5
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 1.1e-06 57.0 97 44.3


User provided reference genes

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