Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 3.7e-143 511.5 258 100.0
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 2.8e-135 485.3 296 85.8
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 9.4e-131 470.3 296 84.5
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 3.6e-130 468.4 296 84.1
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 4.7e-122 441.4 296 78.7
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 4.0e-121 438.3 296 78.0
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 4.0e-121 438.3 296 78.0
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 1.4e-118 429.9 296 76.4
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 1.8e-118 429.5 296 76.0
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 3.1e-118 428.7 296 77.4
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 2.9e-103 379.0 297 69.4
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 3.5e-101 372.1 294 68.0
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 6.0e-101 371.3 297 67.7
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 7.8e-101 370.9 293 68.3
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 1.3e-100 370.2 293 67.6
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 1.7e-100 369.8 296 66.6
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.7e-100 369.8 296 66.9
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 6.6e-100 367.9 295 67.5
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 8.6e-100 367.5 294 67.3
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 1.9e-99 366.3 296 66.2
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 5.6e-99 364.8 293 67.2
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 5.6e-99 364.8 293 67.2
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 7.3e-99 364.4 293 66.2
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 7.3e-99 364.4 293 66.9
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 9.5e-99 364.0 294 66.7
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 9.5e-99 364.0 293 65.9
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.2e-98 363.6 293 65.5
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 1.6e-98 363.2 294 66.3
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.1e-98 362.8 293 65.2
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 4.7e-98 361.7 298 66.4
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 8.1e-98 360.9 293 66.9
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 8.1e-98 360.9 298 66.8
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 8.1e-98 360.9 293 67.6
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 3.1e-97 359.0 294 66.3
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 4.0e-97 358.6 298 67.8
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 1.2e-96 357.1 297 67.0
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 2.0e-96 356.3 297 66.7
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 2.6e-96 355.9 290 67.2
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 3.4e-96 355.5 293 65.9
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 4.4e-96 355.1 296 63.9
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 5.8e-96 354.8 296 66.9
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 1.3e-95 353.6 297 65.0
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.4e-94 350.1 293 64.8
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.9e-94 349.7 293 64.8
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 1.9e-94 349.7 293 64.5
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 1.9e-94 349.7 293 65.2
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 4.1e-94 348.6 293 63.5
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 4.1e-94 348.6 293 64.5
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 2.1e-93 346.3 293 64.5
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 2.1e-93 346.3 293 64.8
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.7e-93 345.9 293 64.8
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 3.5e-93 345.5 294 63.6
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 3.5e-93 345.5 293 64.8
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 3.5e-93 345.5 293 64.2
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 4.6e-93 345.1 293 64.8
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 6.0e-93 344.7 293 64.5
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 6.0e-93 344.7 293 64.2
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 6.0e-93 344.7 295 64.7
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.0e-92 344.0 293 64.5
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 1.7e-92 343.2 293 64.5
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 1.7e-92 343.2 293 65.2
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 1.7e-92 343.2 294 65.3
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 2.3e-92 342.8 294 65.0
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 2.3e-92 342.8 293 64.8
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 3.0e-92 342.4 293 63.5
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 5.1e-92 341.7 293 64.2
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 5.1e-92 341.7 293 63.8
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 6.6e-92 341.3 293 63.5
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 6.6e-92 341.3 293 64.5
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 8.6e-92 340.9 294 62.9
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 8.6e-92 340.9 297 63.3
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 1.1e-91 340.5 293 63.1
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 1.1e-91 340.5 293 63.1
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 1.1e-91 340.5 293 63.1
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 4.3e-91 338.6 293 64.5
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 7.3e-91 337.8 296 62.5
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 7.3e-91 337.8 297 62.0
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.2e-90 337.0 296 62.8
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 2.1e-90 336.3 286 65.0
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 2.8e-90 335.9 297 63.3
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 2.8e-90 335.9 295 62.0
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 6.2e-90 334.7 293 61.8
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 8.1e-90 334.3 293 61.1
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.1e-89 334.0 293 61.4
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 1.8e-89 333.2 287 64.5
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 2.3e-89 332.8 295 62.7
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 3.1e-89 332.4 294 61.9
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 4.0e-89 332.0 294 61.9
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 5.2e-89 331.6 294 61.6
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 5.2e-89 331.6 294 61.6
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 6.8e-89 331.3 287 64.1
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 6.8e-89 331.3 294 63.3
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.5e-88 330.1 297 60.3
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 2.6e-88 329.3 293 61.8
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 3.4e-88 328.9 283 64.0
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 5.8e-88 328.2 293 61.8
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 9.9e-88 327.4 285 62.8
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 1.3e-87 327.0 287 62.4
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 2.2e-87 326.2 297 59.6
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 4.9e-87 325.1 295 61.0
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 6.4e-87 324.7 294 60.9
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 6.4e-87 324.7 293 60.8
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 6.4e-87 324.7 293 60.8
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 1.9e-86 323.2 295 61.0
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 3.2e-86 322.4 298 61.4
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 3.2e-86 322.4 295 61.0
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 9.2e-86 320.9 293 59.4
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 9.2e-86 320.9 293 61.4
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 1.6e-85 320.1 287 61.3
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.7e-85 319.3 293 61.8
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 3.5e-85 318.9 297 57.6
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 1.3e-84 317.0 294 58.8
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 1.3e-84 317.0 294 58.8
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 1.7e-84 316.6 294 59.2
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 3.3e-83 312.4 294 59.2
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 4.3e-83 312.0 299 59.2
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 5.6e-83 311.6 281 60.5
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 1.2e-82 310.5 298 58.7
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.6e-82 310.1 294 60.2
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 2.8e-82 309.3 294 58.8
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.8e-82 309.3 295 60.0
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 3.6e-82 308.9 294 59.5
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 4.7e-82 308.5 300 58.7
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 8.1e-82 307.8 293 59.0
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 8.1e-82 307.8 291 57.0
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 1.4e-81 307.0 298 58.7
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 5.2e-81 305.1 300 58.0
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 1.5e-80 303.5 293 58.4
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 2.0e-80 303.1 276 60.9
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 2.6e-80 302.8 299 57.2
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 7.6e-80 301.2 298 57.7
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 1.3e-76 290.4 289 55.0
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 2.3e-76 289.7 298 54.4
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 6.6e-76 288.1 293 55.6
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 1.5e-75 287.0 296 56.1
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 2.8e-74 282.7 295 57.3
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 1.8e-73 280.0 297 54.5
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.4e-73 279.6 294 56.8
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 4.0e-73 278.9 293 56.7
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 3.4e-72 275.8 295 54.9
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 4.4e-72 275.4 298 54.4
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 4.9e-71 271.9 218 67.4
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 6.4e-71 271.6 249 59.0
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 3.5e-69 265.8 198 73.2
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 5.1e-68 261.9 212 67.0
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 4.3e-67 258.8 291 52.2
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 2.6e-64 249.6 264 53.4
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 6.5e-55 218.4 141 78.7
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 3.3e-51 206.1 255 49.4
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 1.8e-49 200.3 281 43.1
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 5.3e-49 198.7 169 66.3
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 5.0e-47 192.2 202 55.0
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 1.6e-42 177.2 147 63.3
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 2.5e-35 153.3 284 37.0
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 5.7e-35 152.1 143 58.0
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 9.7e-35 151.4 263 39.5
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 6.1e-29 132.1 113 65.5
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 1.4e-28 131.0 106 60.4
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 1.4e-28 131.0 128 55.5
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 4.4e-27 125.9 113 63.7
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 9.1e-25 118.2 89 73.0
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 2.6e-24 116.7 100 67.0
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 5.5e-14 82.4 92 56.5
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 8.8e-12 75.1 75 61.3
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 3.5e-08 63.2 284 25.7
PGR119G1070 Punica granatum HOM05D005748 ORTHO05D007123 1.1e-06 58.2 95 41.1
CiPaw.06G069600 Carya illinoinensis HOM05D005748 ORTHO05D007123 2.5e-06 57.0 101 38.6
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 7.2e-06 55.5 56 57.1


User provided reference genes

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