Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 3.8e-104 382.5 381 100.0
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 8.5e-88 328.2 170 97.6
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 2.5e-87 326.6 170 97.1
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 2.7e-86 323.2 381 92.9
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.3e-83 314.3 170 92.4
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.3e-83 314.3 170 92.4
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 5.9e-81 305.4 170 90.6
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 7.7e-81 305.1 170 90.0
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 1.3e-80 304.3 170 88.8
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 1.9e-79 300.4 170 87.6
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 1.9e-79 300.4 170 88.2
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 2.3e-77 293.5 170 87.1
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 5.2e-77 292.4 170 86.5
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 1.2e-76 291.2 170 85.9
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 1.5e-76 290.8 170 84.1
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 2.0e-76 290.4 170 85.3
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 2.0e-76 290.4 170 85.3
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 1.3e-75 287.7 173 85.0
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 2.8e-75 286.6 170 84.1
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 4.9e-75 285.8 170 85.3
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 6.3e-75 285.4 169 84.6
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 8.3e-75 285.0 167 84.4
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 1.1e-74 284.6 170 84.1
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 5.4e-74 282.3 173 82.7
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 7.0e-74 282.0 170 83.5
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 7.0e-74 282.0 170 82.4
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 7.0e-74 282.0 170 82.4
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 9.2e-74 281.6 169 84.0
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 1.6e-73 280.8 170 82.4
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 1.6e-73 280.8 169 81.7
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 1.6e-73 280.8 169 81.7
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 1.6e-73 280.8 169 82.8
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 2.0e-73 280.4 170 82.9
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 2.7e-73 280.0 170 84.7
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 2.7e-73 280.0 170 82.4
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 2.7e-73 280.0 170 82.9
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 4.5e-73 279.3 170 83.5
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 5.9e-73 278.9 170 81.8
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 5.9e-73 278.9 165 83.0
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 7.8e-73 278.5 167 82.6
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 7.8e-73 278.5 167 82.6
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 7.8e-73 278.5 170 84.1
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 1.3e-72 277.7 170 81.8
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 3.9e-72 276.2 173 82.1
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.9e-72 276.2 167 82.0
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 8.6e-72 275.0 169 81.7
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 8.6e-72 275.0 166 83.1
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 1.5e-71 274.2 170 81.2
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 1.9e-71 273.9 173 82.1
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 4.7e-70 269.2 166 83.7
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 4.7e-70 269.2 170 78.2
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 1.0e-69 268.1 170 80.0
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.4e-69 267.7 168 79.8
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.4e-69 267.7 168 79.8
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 4.0e-69 266.2 170 79.4
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 1.2e-68 264.6 170 79.4
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 1.3e-67 261.2 170 79.4
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 4.1e-66 256.1 166 76.5
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 7.0e-66 255.4 170 74.1
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 9.2e-66 255.0 384 46.6
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 1.2e-65 254.6 170 74.1
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 1.2e-65 254.6 170 74.1
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 1.2e-65 254.6 170 74.1
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 1.2e-65 254.6 170 74.1
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 1.2e-65 254.6 170 74.1
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 2.0e-65 253.8 170 72.9
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 2.7e-65 253.4 170 73.5
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 2.7e-65 253.4 169 76.3
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 6.0e-65 252.3 214 65.0
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 7.8e-65 251.9 165 76.4
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 1.3e-64 251.1 203 67.0
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 1.7e-64 250.8 170 72.4
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 2.3e-64 250.4 165 75.8
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.1e-63 248.1 170 71.8
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 1.1e-63 248.1 170 71.8
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 1.9e-63 247.3 170 74.7
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.2e-62 244.6 170 74.1
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 1.2e-62 244.6 173 74.0
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 3.6e-62 243.0 169 71.0
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 3.6e-62 243.0 154 79.2
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 4.7e-62 242.7 168 73.8
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 6.2e-62 242.3 197 66.5
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 2.3e-61 240.4 198 62.6
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 7.5e-60 235.3 149 80.5
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 7.5e-60 235.3 172 71.5
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 2.9e-59 233.4 169 71.0
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 8.3e-59 231.9 169 69.2
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 2.4e-58 230.3 152 77.6
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 7.1e-58 228.8 149 79.2
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 7.8e-57 225.3 160 75.0
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 1.0e-56 224.9 169 69.2
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 8.6e-56 221.9 186 65.1
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 2.1e-54 217.2 154 72.1
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 5.2e-53 212.6 171 63.7
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 9.9e-52 208.4 167 64.1
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 2.4e-50 203.8 150 70.7
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 3.2e-50 203.4 131 76.3
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 5.2e-45 186.0 119 80.7
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.9e-31 141.0 108 67.6
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.9e-31 141.0 108 67.6
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 3.3e-31 140.2 70 90.0
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 9.6e-31 138.7 93 81.7
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 7.6e-28 129.0 123 59.3
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 8.4e-27 125.6 65 87.7
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 4.2e-26 123.2 68 82.4
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 3.5e-25 120.2 163 42.3
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 6.0e-25 119.4 93 68.8
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 1.9e-23 114.4 79 81.0
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 4.3e-23 113.2 172 37.8
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 1.4e-21 108.2 66 69.7
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 1.4e-18 98.2 78 73.1
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 9.3e-18 95.5 78 70.5
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 2.7e-17 94.0 69 76.8
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.0e-16 92.0 75 61.3
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 6.7e-16 89.4 51 94.1
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 5.7e-15 86.3 64 75.0
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 6.9e-13 79.3 64 64.1
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 1.1e-10 72.0 40 92.5
arahy.Tifrunner.gnm1.ann1.ZC4B2S Arachis hypogaea HOM05D001903 ORTHO05D001847 2.5e-10 70.9 50 84.0
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 1.3e-08 65.1 39 87.2
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 1.3e-08 65.1 35 85.7
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 8.7e-08 62.4 31 87.1


User provided reference genes

Program Settings