Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G276200 Glycine max HOM05D003240 ORTHO05D009426 4.6e-52 208.0 103 100.0
Glyma.12G225100 Glycine max HOM05D003240 ORTHO05D009426 1.7e-41 172.9 121 76.9
Phvul.005G072700 Phaseolus vulgaris HOM05D003240 ORTHO05D009426 1.8e-32 142.9 122 66.4
VMungo1080G0324 Vigna mungo HOM05D003240 ORTHO05D009426 7.7e-31 137.5 123 62.6
Lj3g0021284 Lotus japonicus HOM05D003240 ORTHO05D009426 3.2e-29 132.1 122 61.5
Medtr2g085370 Medicago truncatula HOM05D003240 ORTHO05D009426 5.0e-22 108.2 122 56.6
Haze_09435 Corylus avellana HOM05D003240 ORTHO05D009426 6.1e-20 101.3 121 52.1
Haze_09433 Corylus avellana HOM05D003240 ORTHO05D009426 2.6e-18 95.9 112 48.2
TPR.G38961 Trifolium pratense HOM05D003240 ORTHO05D009426 9.7e-18 94.0 50 82.0
Oeu019313.1 Olea europaea HOM05D003240 ORTHO05D009426 1.4e-16 90.1 113 47.8
Potri.001G399200 Populus trichocarpa HOM05D003240 ORTHO05D009426 3.1e-16 89.0 120 45.8
Potri.011G118600 Populus trichocarpa HOM05D003240 ORTHO05D009426 5.3e-16 88.2 120 46.7
Cfa020576 Carpinus fangiana HOM05D003240 ORTHO05D009426 7.0e-16 87.8 113 47.8
Hma1.2p1_0458F.1_g157060 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 9.1e-16 87.4 115 43.5
Sabra16G0261800 Salix brachista HOM05D003240 ORTHO05D009426 9.1e-16 87.4 110 42.7
Lj3g0010365 Lotus japonicus HOM05D003240 ORTHO05D009426 4.5e-15 85.1 122 43.4
CiPaw.12G118800 Carya illinoinensis HOM05D003240 ORTHO05D009426 5.9e-15 84.7 125 39.2
CANSAT56G1752 Cannabis sativa HOM05D003240 ORTHO05D009426 1.7e-14 83.2 57 63.2
Cpa.g.sc80.73 Carica papaya HOM05D003240 ORTHO05D009426 2.2e-14 82.8 58 62.1
Prupe.4G180300 Prunus persica HOM05D003240 ORTHO05D009426 6.5e-14 81.3 115 47.8
Manes.15G087500 Manihot esculenta HOM05D003240 ORTHO05D009426 1.9e-13 79.7 112 43.8
Gohir.A04G031760 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.5e-13 79.3 57 61.4
Gohir.A04G031920 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.5e-13 79.3 57 61.4
Gohir.D05G352600 Gossypium hirsutum HOM05D003240 ORTHO05D009426 2.5e-13 79.3 57 61.4
MD03G1228400 Malus domestica HOM05D003240 ORTHO05D009426 2.5e-13 79.3 111 44.1
Gorai.009G384700 Gossypium raimondii HOM05D003240 ORTHO05D009426 3.2e-13 79.0 57 61.4
Hma1.2p1_0898F.1_g234470 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.2e-13 79.0 119 42.0
TWI38G1889 Tripterygium wilfordii HOM05D003240 ORTHO05D009426 3.2e-13 79.0 121 39.7
Eucgr.F01147 Eucalyptus grandis HOM05D003240 ORTHO05D009426 5.5e-13 78.2 110 41.8
Sabra11G0103500 Salix brachista HOM05D003240 ORTHO05D009426 5.5e-13 78.2 119 44.5
Gorai.009G384900 Gossypium raimondii HOM05D003240 ORTHO05D009426 7.2e-13 77.8 57 59.6
Gorai.009G385100 Gossypium raimondii HOM05D003240 ORTHO05D009426 7.2e-13 77.8 57 59.6
CAN.G162.53 Capsicum annuum HOM05D003240 ORTHO05D009426 9.4e-13 77.4 111 44.1
FAN16G0971 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.2e-12 77.0 121 41.3
Gorai.009G385000 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.2e-12 77.0 57 59.6
Atru.chr2.2486 Acer truncatum HOM05D003240 ORTHO05D009426 1.6e-12 76.6 123 44.7
Ciclev10010456m.g Citrus clementina HOM05D003240 ORTHO05D009426 1.6e-12 76.6 97 41.2
RcHm_v2.0_Chr5g0033251 Rosa chinensis HOM05D003240 ORTHO05D009426 2.1e-12 76.3 114 39.5
FvH4_3g19820 Fragaria vesca HOM05D003240 ORTHO05D009426 2.7e-12 75.9 121 41.3
Hma1.2p1_0458F.1_g157080 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 2.7e-12 75.9 124 43.5
TPR.G39028 Trifolium pratense HOM05D003240 ORTHO05D009426 2.7e-12 75.9 105 44.8
Dinv14922 Davidia involucrata HOM05D003240 ORTHO05D009426 3.6e-12 75.5 107 43.0
Nitab4.5_0001241g0070 Nicotiana tabacum HOM05D003240 ORTHO05D009426 3.6e-12 75.5 117 40.2
BcaB07g33356 Brassica carinata HOM05D003240 ORTHO05D009426 4.7e-12 75.1 60 56.7
DCAR_013111 Daucus carota HOM05D003240 ORTHO05D009426 4.7e-12 75.1 57 54.4
Nitab4.5_0001336g0090 Nicotiana tabacum HOM05D003240 ORTHO05D009426 4.7e-12 75.1 110 44.5
Gohir.A04G032000 Gossypium hirsutum HOM05D003240 ORTHO05D009426 6.1e-12 74.7 57 59.6
A06p01190 Brassica napus HOM05D003240 ORTHO05D009426 8.0e-12 74.3 60 56.7
BraA06t23346Z Brassica rapa HOM05D003240 ORTHO05D009426 8.0e-12 74.3 60 56.7
Sopen07g031280 Solanum pennellii HOM05D003240 ORTHO05D009426 8.0e-12 74.3 104 42.3
FAN25G3490 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.0e-11 73.9 121 39.7
SGA_v2.0_scaffold73G24260 Striga asiatica HOM05D003240 ORTHO05D009426 1.0e-11 73.9 57 61.4
AT1G53130 Arabidopsis thaliana HOM05D003240 ORTHO05D009426 1.4e-11 73.6 122 38.5
DCAR_017136 Daucus carota HOM05D003240 ORTHO05D009426 1.4e-11 73.6 58 51.7
Thhalv10022293m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 1.4e-11 73.6 59 52.5
FAN21G1097 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.4e-11 73.6 121 40.5
Hma1.2p1_0458F.1_g157090 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 1.4e-11 73.6 83 45.8
MBI07_g30192_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 1.4e-11 73.6 106 44.3
Thhalv10012399m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 1.8e-11 73.2 59 55.9
Cfa020578 Carpinus fangiana HOM05D003240 ORTHO05D009426 2.3e-11 72.8 97 44.3
Aqoxy1G02389 Aquilegia oxysepala HOM05D003240 ORTHO05D009426 3.0e-11 72.4 113 38.9
AL1G61490 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 3.0e-11 72.4 116 37.9
BcaC08g43498 Brassica carinata HOM05D003240 ORTHO05D009426 3.0e-11 72.4 60 55.0
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 3.0e-11 72.4 60 55.0
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 3.0e-11 72.4 60 55.0
CARHR043350 Cardamine hirsuta HOM05D003240 ORTHO05D009426 3.0e-11 72.4 121 37.2
Migut.M00801 Erythranthe guttata HOM05D003240 ORTHO05D009426 3.0e-11 72.4 128 39.8
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 3.0e-11 72.4 55 60.0
Nn1g06519 Nelumbo nucifera HOM05D003240 ORTHO05D009426 3.0e-11 72.4 103 44.7
TAR627G0347 Trochodendron aralioides HOM05D003240 ORTHO05D009426 3.0e-11 72.4 80 48.8
AL3G27700 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 4.0e-11 72.0 59 52.5
CSS0038111 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 4.0e-11 72.0 110 41.8
Carub.0003s1496 Capsella rubella HOM05D003240 ORTHO05D009426 4.0e-11 72.0 59 52.5
Gohir.D05G352700 Gossypium hirsutum HOM05D003240 ORTHO05D009426 4.0e-11 72.0 114 40.4
CSS0044584 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 5.2e-11 71.6 110 41.8
Gohir.A04G032100 Gossypium hirsutum HOM05D003240 ORTHO05D009426 6.8e-11 71.2 57 56.1
Prupe.4G180400 Prunus persica HOM05D003240 ORTHO05D009426 6.8e-11 71.2 111 39.6
THA.LOC104818082 Tarenaya hassleriana HOM05D003240 ORTHO05D009426 6.8e-11 71.2 59 55.9
Thecc.07G091300 Theobroma cacao HOM05D003240 ORTHO05D009426 6.8e-11 71.2 129 41.9
Duzib213G1023 Durio zibethinus HOM05D003240 ORTHO05D009426 8.8e-11 70.9 129 38.0
PGR083G0779 Punica granatum HOM05D003240 ORTHO05D009426 8.8e-11 70.9 113 38.1
PGSC0003DMG400012465 Solanum tuberosum HOM05D003240 ORTHO05D009426 1.2e-10 70.5 113 42.5
BcaNung07375 Brassica carinata HOM05D003240 ORTHO05D009426 1.5e-10 70.1 97 40.2
Medtr2g085360 Medicago truncatula HOM05D003240 ORTHO05D009426 2.0e-10 69.7 106 42.5
ATR0737G149 Amborella trichopoda HOM05D003240 ORTHO05D009426 4.4e-10 68.6 55 60.0
BcaC09g48486 Brassica carinata HOM05D003240 ORTHO05D009426 4.4e-10 68.6 108 37.0
COL.COLO4_27180 Corchorus olitorius HOM05D003240 ORTHO05D009426 4.4e-10 68.6 130 36.2
BcaB04g20937 Brassica carinata HOM05D000882 ORTHO05D009426 5.7e-10 68.2 60 51.7
Cc05_g11970 Coffea canephora HOM05D003240 ORTHO05D009426 5.7e-10 68.2 117 40.2
Sp1g39680 Schrenkiella parvula HOM05D003240 ORTHO05D009426 5.7e-10 68.2 122 34.4
Aa31LG10G2000 Aethionema arabicum HOM05D003240 ORTHO05D009426 7.5e-10 67.8 118 38.1
Sp3g13510 Schrenkiella parvula HOM05D003240 ORTHO05D009426 1.3e-09 67.0 129 35.7
Carub.0001s4229 Capsella rubella HOM05D003240 ORTHO05D009426 2.2e-09 66.2 121 38.0
Gohir.D05G352500 Gossypium hirsutum HOM05D003240 ORTHO05D009426 3.7e-09 65.5 116 39.7
Gorai.009G384600 Gossypium raimondii HOM05D003240 ORTHO05D009426 3.7e-09 65.5 116 39.7
Nn4g25258 Nelumbo nucifera HOM05D003240 ORTHO05D009426 6.3e-09 64.7 102 42.2
unitig_37.g12571 Utricularia gibba HOM05D003240 ORTHO05D009426 4.5e-07 58.5 106 34.0
Lalb_Chr03g0042631 Lupinus albus HOM05D003240 ORTHO05D009426 1.7e-06 56.6 112 39.3
PSO675G7736 Papaver somniferum HOM05D003240 ORTHO05D009426 2.3e-06 56.2 56 44.6


User provided reference genes

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