Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 3.6e-80 301.6 159 100.0
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 1.6e-67 259.6 157 92.4
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 7.8e-51 204.1 155 76.8
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 9.5e-49 197.2 155 74.2
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 1.6e-35 153.3 169 61.5
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 1.7e-29 133.3 161 55.3
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 2.9e-29 132.5 157 59.9
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 4.9e-29 131.7 161 57.8
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 1.1e-28 130.6 121 64.5
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 1.4e-28 130.2 163 56.4
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 1.4e-28 130.2 165 50.9
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 1.4e-28 130.2 162 54.9
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 2.4e-28 129.4 150 54.7
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 4.1e-28 128.6 160 51.9
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 1.2e-27 127.1 162 54.9
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 1.6e-27 126.7 168 54.2
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 3.5e-27 125.6 163 52.8
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 2.5e-25 119.4 150 51.3
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 2.5e-25 119.4 153 52.3
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 3.3e-25 119.0 146 52.7
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 4.3e-25 118.6 146 55.5
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 5.6e-25 118.2 159 52.8
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 2.1e-24 116.3 153 54.2
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 4.7e-24 115.2 156 52.6
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 6.2e-24 114.8 156 54.5
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 8.1e-24 114.4 148 53.4
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 8.1e-24 114.4 154 55.2
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 8.1e-24 114.4 161 54.7
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 1.8e-23 113.2 150 52.0
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 1.8e-23 113.2 143 53.1
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 4.0e-23 112.1 146 52.7
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 6.8e-23 111.3 125 58.4
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 6.8e-23 111.3 147 53.1
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 1.2e-22 110.5 150 51.3
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 1.2e-22 110.5 152 47.4
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 1.2e-22 110.5 150 52.0
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 3.4e-22 109.0 142 51.4
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 5.8e-22 108.2 160 51.2
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 7.6e-22 107.8 146 51.4
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 7.6e-22 107.8 139 53.2
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 7.6e-22 107.8 150 50.7
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 9.9e-22 107.5 162 50.0
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 1.3e-21 107.1 159 49.7
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 1.7e-21 106.7 155 49.0
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.7e-21 106.7 139 52.5
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 1.7e-21 106.7 164 46.3
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 2.2e-21 106.3 161 48.4
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 4.9e-21 105.1 95 61.1
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 4.9e-21 105.1 150 47.3
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 4.9e-21 105.1 150 47.3
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 4.9e-21 105.1 150 47.3
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 4.9e-21 105.1 165 49.7
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 4.9e-21 105.1 156 50.6
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 8.4e-21 104.4 150 47.3
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 8.4e-21 104.4 151 47.0
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 8.4e-21 104.4 163 47.2
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 1.1e-20 104.0 145 49.7
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 1.1e-20 104.0 161 47.8
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.9e-20 103.2 150 48.7
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 2.4e-20 102.8 102 60.8
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 2.4e-20 102.8 127 55.1
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.2e-20 102.4 163 46.6
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 3.2e-20 102.4 125 55.2
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 3.2e-20 102.4 130 53.8
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 2.1e-19 99.8 155 47.1
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 2.1e-19 99.8 151 50.3
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 2.1e-19 99.8 128 50.8
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 3.5e-19 99.0 163 46.6
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 3.5e-19 99.0 163 43.6
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 4.6e-19 98.6 163 43.6
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 4.6e-19 98.6 113 52.2
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 7.8e-19 97.8 163 46.6
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 7.8e-19 97.8 163 43.6
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 1.0e-18 97.4 140 50.7
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 2.3e-18 96.3 137 46.0
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 2.3e-18 96.3 149 44.3
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 3.0e-18 95.9 154 50.0
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 3.9e-18 95.5 152 48.0
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 6.6e-18 94.7 148 50.0
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 6.6e-18 94.7 158 48.1
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.9e-17 93.2 159 45.3
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 2.5e-17 92.8 121 51.2
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 2.5e-17 92.8 150 46.0
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 7.3e-17 91.3 138 47.1
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 9.6e-17 90.9 150 46.7
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 1.3e-16 90.5 153 43.8
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 2.1e-16 89.7 118 50.0
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 2.8e-16 89.4 161 41.6
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 8.1e-16 87.8 107 51.4
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 1.8e-15 86.7 162 42.6
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 1.5e-14 83.6 160 41.9
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 2.6e-14 82.8 146 47.3
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 5.8e-14 81.6 93 48.4
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 5.8e-14 81.6 93 48.4
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 7.6e-14 81.3 165 44.2
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 9.3e-12 74.3 88 50.0
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 9.3e-12 74.3 80 56.2
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.1e-11 73.2 88 51.1
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 2.1e-11 73.2 164 37.8
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 3.5e-11 72.4 85 51.8
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 3.5e-11 72.4 85 51.8
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 6.0e-11 71.6 147 41.5
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 6.0e-11 71.6 155 36.1
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 3.9e-10 68.9 56 64.3
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 9.6e-09 64.3 43 76.7
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 1.3e-08 63.9 118 44.1
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 6.2e-08 61.6 166 35.5
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 6.2e-08 61.6 101 41.6
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 8.1e-08 61.2 104 38.5
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 8.1e-08 61.2 90 46.7
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 1.1e-07 60.8 111 41.4
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 4.0e-07 58.9 138 37.0
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 5.3e-07 58.5 63 57.1
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 5.3e-07 58.5 166 35.5
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 5.3e-07 58.5 52 57.7
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 2.6e-06 56.2 133 33.8
Lalb_Chr03g0030791 Lupinus albus HOM05D005433 ORTHO05D006675 5.8e-06 55.1 96 46.9
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 5.8e-06 55.1 163 31.3


User provided reference genes

Program Settings