Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 5.1e-243 844.0 416 100.0
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 1.9e-202 709.1 418 87.1
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 1.6e-156 556.6 422 72.5
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 1.8e-155 553.1 422 72.3
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 1.1e-88 331.3 415 52.8
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 2.5e-88 330.1 409 52.3
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 6.0e-87 325.5 438 49.8
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 3.8e-81 306.2 444 46.8
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 7.7e-74 282.0 440 45.0
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 1.0e-73 281.6 467 45.4
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 2.3e-70 270.4 418 45.5
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 1.2e-58 231.5 402 43.0
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 3.2e-56 223.4 421 42.8
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 2.0e-53 214.2 457 42.2
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 6.3e-52 209.1 337 43.9
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 1.4e-51 208.0 442 39.8
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 1.8e-51 207.6 403 42.7
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 5.9e-50 202.6 431 39.7
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 2.7e-47 193.7 394 41.4
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 1.4e-46 191.4 421 40.6
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 3.0e-46 190.3 449 40.1
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 4.0e-46 189.9 419 40.1
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 6.8e-46 189.1 446 36.5
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 5.7e-45 186.0 411 39.4
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 9.8e-45 185.3 423 40.9
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 2.2e-44 184.1 426 38.3
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 2.4e-43 180.6 409 39.6
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 7.0e-43 179.1 440 35.7
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 2.0e-42 177.6 461 37.3
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 2.3e-41 174.1 416 38.5
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 2.3e-41 174.1 454 37.4
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 8.6e-41 172.2 417 38.8
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 8.6e-41 172.2 421 40.4
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 8.6e-41 172.2 428 38.3
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 8.6e-41 172.2 448 36.4
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 1.1e-40 171.8 420 39.3
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.5e-40 171.4 414 39.6
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 4.2e-40 169.9 450 37.8
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 2.1e-39 167.5 448 37.9
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 3.6e-39 166.8 433 39.0
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 6.1e-39 166.0 455 36.9
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 6.1e-39 166.0 423 37.8
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 8.0e-39 165.6 428 36.7
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.0e-38 165.2 436 37.4
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 1.4e-38 164.9 444 35.8
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 4.0e-38 163.3 455 36.7
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 6.8e-38 162.5 388 37.1
VMungo1127G1756 Vigna mungo HOM05D006105 ORTHO05D006345 6.8e-38 162.5 300 41.3
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.2e-37 161.8 430 36.3
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.5e-37 161.4 413 37.3
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 4.4e-37 159.8 456 37.3
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 9.8e-37 158.7 446 37.0
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 2.2e-36 157.5 434 36.4
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 2.8e-36 157.1 366 37.4
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 4.9e-36 156.4 456 36.2
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 3.1e-35 153.7 428 35.7
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 3.1e-35 153.7 418 37.6
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 4.1e-35 153.3 409 37.9
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 5.4e-35 152.9 433 36.0
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 5.4e-35 152.9 452 35.4
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 7.0e-35 152.5 420 37.6
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 1.2e-34 151.8 514 30.7
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.2e-34 151.8 412 36.9
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 1.6e-34 151.4 416 34.4
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 1.7e-33 147.9 413 37.0
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 5.0e-33 146.4 443 35.9
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 4.3e-32 143.3 418 34.2
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 4.3e-32 143.3 432 35.2
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 1.2e-31 141.7 441 34.2
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 1.2e-31 141.7 426 33.6
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 1.6e-31 141.4 414 35.5
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 1.8e-30 137.9 297 40.1
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 1.8e-30 137.9 380 37.1
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 5.2e-30 136.3 438 32.4
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 2.0e-29 134.4 377 35.5
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 4.4e-29 133.3 436 34.2
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 5.7e-29 132.9 449 31.6
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 1.7e-28 131.3 461 32.8
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.2e-28 131.0 443 33.2
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 3.7e-28 130.2 430 35.8
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 7.0e-27 125.9 380 34.7
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 7.0e-27 125.9 411 34.1
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 1.2e-26 125.2 440 32.5
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 1.3e-25 121.7 412 31.1
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.3e-25 121.7 426 33.1
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 6.6e-25 119.4 427 33.7
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 8.6e-25 119.0 425 33.6
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.9e-24 117.9 245 40.0
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 1.2e-23 115.2 441 32.4
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 2.8e-23 114.0 439 31.4
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 3.6e-23 113.6 431 32.3
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 3.6e-23 113.6 299 32.4
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 4.7e-23 113.2 435 32.0
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 5.2e-22 109.8 424 33.0
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 1.2e-21 108.6 405 31.6
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 2.6e-21 107.5 423 30.7
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 1.7e-20 104.8 297 36.7
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 2.2e-20 104.4 431 29.9
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 6.4e-20 102.8 443 29.8
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 8.3e-20 102.4 399 31.3
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 8.3e-20 102.4 405 32.3
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 1.9e-19 101.3 426 30.8
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 7.0e-19 99.4 409 30.6
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 6.0e-18 96.3 435 30.1
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 3.9e-17 93.6 371 30.2
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 1.1e-16 92.0 436 28.9
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 3.3e-16 90.5 248 34.3
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 1.6e-15 88.2 402 29.1
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 2.1e-15 87.8 235 38.3
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 2.1e-15 87.8 436 28.7
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 8.1e-15 85.9 270 33.0
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.4e-14 85.1 367 29.4
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.5e-13 81.6 315 29.8
TAR627G0886 Trochodendron aralioides HOM05D000157 ORTHO05D006345 2.0e-13 81.3 241 33.6
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 3.4e-13 80.5 337 30.0
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 9.9e-13 79.0 337 29.7
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 2.2e-12 77.8 245 32.7
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 2.4e-11 74.3 406 30.5
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 3.2e-11 73.9 420 28.6
ATR0602G093 Amborella trichopoda HOM05D006105 ORTHO05D006345 3.5e-10 70.5 427 27.9
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 3.0e-09 67.4 401 28.7
CANSAT35G1552 Cannabis sativa HOM05D006105 ORTHO05D006345 5.1e-09 66.6 451 27.3
Lsat_1_v5_gn_7_103061 Lactuca sativa HOM05D006105 ORTHO05D006345 1.5e-08 65.1 396 28.3
Solyc10g007156.2 Solanum lycopersicum HOM05D016660 ORTHO05D006345 1.5e-08 65.1 183 37.7
Aqoxy4G00493 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 1.9e-08 64.7 461 26.7
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 1.2e-07 62.0 407 27.5
GSVIVG01021165001 Vitis vinifera HOM05D006105 ORTHO05D006345 3.6e-07 60.5 406 28.3
MBI06_g40465_MAGBIO Magnolia biondii HOM05D026394 ORTHO05D030051 8.1e-07 59.3 88 46.6
SEGI_16969 Sequoiadendron giganteum HOM05D016559 ORTHO05D019650 8.1e-07 59.3 312 28.2
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 1.1e-06 58.9 231 32.5
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.4e-06 58.5 221 32.6
MBI06_g46086_MAGBIO Magnolia biondii HOM05D026394 ORTHO05D030051 3.1e-06 57.4 122 39.3
Os01g0212500 Oryza sativa ssp. japonica HOM05D041388 ORTHO05D037239 5.2e-06 56.6 64 56.2


User provided reference genes

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