Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 0.0e+00 1092.0 565 100.0
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 1.9e-309 1065.1 565 96.8
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 4.4e-298 1027.3 566 90.1
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 2.0e-295 1018.5 566 89.9
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 4.4e-282 974.2 565 85.1
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 4.1e-280 967.6 529 89.2
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 9.5e-277 956.4 559 84.1
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 4.7e-276 954.1 559 83.9
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 2.6e-274 948.3 559 83.7
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 2.2e-273 945.3 558 83.5
QL08p026520 Quercus lobata HOM05D005597 ORTHO05D007304 3.5e-271 937.9 528 85.2
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 9.5e-269 929.9 573 80.3
CiPaw.11G160900 Carya illinoinensis HOM05D005597 ORTHO05D007304 5.2e-267 924.1 531 82.5
Thecc.07G110000 Theobroma cacao HOM05D005597 ORTHO05D007304 4.4e-266 921.0 528 82.8
Atru.chr2.2174 Acer truncatum HOM05D005597 ORTHO05D007304 9.8e-266 919.8 530 83.0
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 8.3e-265 916.8 528 83.3
Gorai.013G173400 Gossypium raimondii HOM05D005597 ORTHO05D007304 2.4e-264 915.2 529 82.6
Gohir.A13G149000 Gossypium hirsutum HOM05D005597 ORTHO05D007304 9.2e-264 913.3 529 82.2
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 1.2e-263 912.9 531 81.7
Duzib213G0141 Durio zibethinus HOM05D005597 ORTHO05D007304 1.6e-263 912.5 528 82.0
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 1.6e-263 912.5 561 78.4
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 2.1e-263 912.1 531 81.0
RcHm_v2.0_Chr5g0031201 Rosa chinensis HOM05D005597 ORTHO05D007304 2.7e-263 911.8 528 83.0
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 7.8e-263 910.2 567 77.6
ClCG11G017480 Citrullus lanatus HOM05D005597 ORTHO05D007304 1.5e-261 906.0 533 82.0
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 1.9e-261 905.6 568 77.8
CsaV3_4G033140 Cucumis sativus L. HOM05D005597 ORTHO05D007304 4.3e-261 904.4 533 80.9
FAN11G3052 Fragaria x ananassa HOM05D005597 ORTHO05D007304 4.7e-260 901.0 568 77.3
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 4.7e-260 901.0 569 80.1
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 6.2e-260 900.6 573 80.3
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 1.1e-259 899.8 528 81.6
FvH4_3g18450 Fragaria vesca HOM05D005597 ORTHO05D007304 1.1e-259 899.8 568 77.3
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 1.4e-259 899.4 528 82.2
COL.COLO4_17568 Corchorus olitorius HOM05D005597 ORTHO05D007304 1.8e-259 899.0 554 78.9
FAN21G1763 Fragaria x ananassa HOM05D005597 ORTHO05D007304 3.1e-259 898.3 568 77.5
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 1.2e-258 896.3 530 79.4
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 2.0e-258 895.6 566 76.7
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 7.6e-258 893.6 528 81.6
Dinv14987 Davidia involucrata HOM05D005597 ORTHO05D007304 9.9e-258 893.3 531 80.2
Aqoxy1G02067 Aquilegia oxysepala HOM05D005597 ORTHO05D007304 2.9e-257 891.7 531 79.7
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 3.2e-256 888.3 531 81.0
Lj8A149T49 Lonicera japonica HOM05D005597 ORTHO05D007304 4.6e-255 884.4 530 80.0
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 7.8e-255 883.6 529 79.8
Nn1g09131 Nelumbo nucifera HOM05D005597 ORTHO05D007304 1.3e-254 882.9 531 79.3
FAN16G1691 Fragaria x ananassa HOM05D005597 ORTHO05D007304 1.7e-254 882.5 576 75.3
Rhsim06G0207300 Rhododendron simsii HOM05D005597 ORTHO05D007304 1.7e-254 882.5 531 78.9
TAR626G0744 Trochodendron aralioides HOM05D005597 ORTHO05D007304 3.0e-254 881.7 566 75.1
Hma1.2p1_1016F.1_g248150 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 1.5e-253 879.4 531 78.7
SGA_v2.0_scaffold47G17797 Striga asiatica HOM05D005597 ORTHO05D007304 1.9e-253 879.0 564 75.5
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 4.7e-252 874.4 510 81.6
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 1.8e-251 872.5 532 78.8
Sabra11G0098300 Salix brachista HOM05D005597 ORTHO05D007304 5.8e-250 867.5 581 72.8
Migut.H01992 Erythranthe guttata HOM05D005597 ORTHO05D007304 2.9e-249 865.1 528 77.7
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 1.1e-248 863.2 563 73.0
CDE02G4663 Ceratophyllum demersum HOM05D005597 ORTHO05D007304 1.1e-248 863.2 533 78.0
CAN.G162.8 Capsicum annuum HOM05D005597 ORTHO05D007304 2.4e-248 862.1 560 73.6
MBI07_g03181_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D007304 9.3e-248 860.1 533 78.0
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 6.0e-247 857.4 531 76.8
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 7.8e-247 857.1 567 72.0
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 7.8e-247 857.1 531 76.8
Ciclev10019496m.g Citrus clementina HOM05D005597 ORTHO05D007304 2.3e-246 855.5 531 77.0
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 5.1e-246 854.4 567 72.1
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 5.1e-246 854.4 528 76.9
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 6.6e-246 854.0 568 72.4
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 6.6e-246 854.0 567 72.3
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 6.6e-246 854.0 567 72.3
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 5.6e-245 850.9 563 71.9
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 7.3e-245 850.5 568 72.7
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 7.3e-245 850.5 567 72.7
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 1.6e-244 849.4 568 72.2
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 1.6e-244 849.4 531 76.1
PGSC0003DMG400012388 Solanum tuberosum HOM05D005597 ORTHO05D007304 4.8e-244 847.8 531 76.1
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 8.1e-244 847.0 567 72.3
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 8.1e-244 847.0 567 72.3
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 1.1e-243 846.7 566 72.3
vmacro11932 Vaccinium macrocarpon HOM05D005597 ORTHO05D007304 2.4e-243 845.5 590 69.5
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 5.3e-243 844.3 564 72.3
Solyc07g062540.3 Solanum lycopersicum HOM05D005597 ORTHO05D007304 5.3e-243 844.3 531 75.7
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 1.5e-242 842.8 531 75.3
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 1.5e-242 842.8 568 71.5
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 2.6e-242 842.0 510 77.8
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 4.4e-242 841.3 527 75.7
Sopen07g030770 Solanum pennellii HOM05D005597 ORTHO05D007304 4.4e-242 841.3 531 75.5
FAN25G0069 Fragaria x ananassa HOM05D005597 ORTHO05D007304 4.9e-241 837.8 574 72.8
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 2.4e-240 835.5 567 72.3
CANSAT35G0471 Cannabis sativa HOM05D005597 ORTHO05D007304 1.2e-239 833.2 492 80.9
ECA240G4584 Erigeron canadensis HOM05D000832 ORTHO05D000982 3.5e-239 831.6 531 75.1
Hund10564 Selenicereus undatus HOM05D005597 ORTHO05D007304 1.1e-237 826.6 554 72.6
HanXRQChr14g0442721 Helianthus annuus HOM05D005597 ORTHO05D007304 2.5e-237 825.5 570 70.9
Lsat_1_v5_gn_9_100260 Lactuca sativa HOM05D005597 ORTHO05D007304 4.0e-235 818.1 533 73.0
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 1.2e-234 816.6 535 75.1
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 1.1e-232 810.1 546 72.0
ATR0602G238 Amborella trichopoda HOM05D005597 ORTHO05D007304 7.1e-232 807.4 533 73.0
Haze_09335 Corylus avellana HOM05D005597 ORTHO05D007304 3.5e-231 805.1 477 82.0
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 3.3e-229 798.5 531 71.8
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 2.8e-228 795.4 564 68.6
Zm00001eb120330 Zea mays HOM05D005597 ORTHO05D007304 1.1e-227 793.5 568 68.8
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 4.5e-226 788.1 521 73.9
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 1.3e-217 760.0 497 73.6
Duzib213G0888 Durio zibethinus HOM05D005597 ORTHO05D007304 2.3e-214 749.2 445 81.3
HPP92_004052 Vanilla planifolia HOM05D005597 ORTHO05D007304 1.8e-211 739.6 616 60.4
MELO3C025637.2 Cucumis melo HOM05D005597 ORTHO05D007304 1.2e-202 710.3 433 79.9
AUR62019570 Chenopodium quinoa HOM05D005597 ORTHO05D007304 5.9e-202 708.0 564 64.4
Gohir.D13G153500 Gossypium hirsutum HOM05D005597 ORTHO05D007304 1.2e-199 700.3 405 82.7
Peaxi162Scf00069g02235 Petunia axillaris HOM05D005597 ORTHO05D007304 1.1e-195 687.2 433 75.5
Psat5g238320 Pisum sativum HOM05D005597 ORTHO05D007304 1.5e-192 676.8 418 81.3
DCAR_013152 Daucus carota HOM05D005597 ORTHO05D007304 2.1e-191 672.9 439 74.0
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 2.7e-183 646.0 541 59.5
Hma1.2p1_1016F.1_g248140 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 8.0e-183 644.4 391 79.5
Sc03g0010510 Simmondsia chinensis HOM05D005597 ORTHO05D007304 7.8e-170 601.3 390 73.8
Ah.06g185290 Amaranthus hybridus HOM05D005597 ORTHO05D007304 1.4e-155 553.9 429 65.5
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 1.9e-152 543.5 548 51.5
Pp3c6_16240 Physcomitrium patens HOM05D005597 ORTHO05D007304 1.6e-151 540.4 548 51.5
AagrBONN_evm.TU.Sc2ySwM_228.833 Anthoceros agrestis HOM05D005597 ORTHO05D007304 1.7e-148 530.4 537 51.8
Dinv18359 Davidia involucrata HOM05D005597 ORTHO05D007304 1.2e-146 524.2 334 77.2
CBR_g38668 Chara braunii HOM05D005597 ORTHO05D007304 1.6e-119 434.1 581 41.1
SHI21382 Sapria himalayana HOM05D005597 ORTHO05D007304 3.7e-119 433.0 340 63.5
Cpa.g.sc97.103 Carica papaya HOM05D005597 ORTHO05D007304 4.8e-95 352.8 213 81.7
Oeu059263.1 Olea europaea HOM05D005597 ORTHO05D007304 2.1e-90 337.4 383 50.9
SHI21385 Sapria himalayana HOM05D000105 ORTHO05D000023 7.9e-90 335.5 221 71.0
SEGI_23731 Sequoiadendron giganteum HOM05D005597 ORTHO05D007304 2.1e-82 310.8 224 64.7
Nitab4.5_0001145g0050 Nicotiana tabacum HOM05D005597 ORTHO05D007304 3.6e-82 310.1 239 65.7
Nitab4.5_0000246g0240 Nicotiana tabacum HOM05D005597 ORTHO05D007304 7.0e-78 295.8 542 37.6
MCO07G083 Micromonas commoda HOM05D005597 ORTHO05D007304 8.2e-71 272.3 550 33.6
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 1.4e-65 255.0 532 33.6
Cfa025275 Carpinus fangiana HOM05D005597 ORTHO05D028637 8.6e-60 235.7 504 33.7
Gohir.A07G160600 Gossypium hirsutum HOM05D005597 ORTHO05D007304 8.9e-57 225.7 148 75.7
Gohir.A04G098250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.0e-56 224.6 151 73.5
Gohir.A03G066250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 4.5e-53 213.4 139 75.5
Actinidia09803 Actinidia chinensis HOM05D005597 ORTHO05D007304 1.0e-49 202.2 126 76.2
Atru.chr2.2170 Acer truncatum HOM05D005597 ORTHO05D007304 1.5e-43 181.8 95 82.1
COL.COLO4_17572 Corchorus olitorius HOM05D005597 ORTHO05D007304 2.3e-41 174.5 106 78.3
Lsat_1_v5_gn_9_21740 Lactuca sativa HOM05D005597 ORTHO05D007174 1.5e-40 171.8 199 55.8
Actinidia24363 Actinidia chinensis HOM05D005597 ORTHO05D007304 3.3e-19 100.9 89 58.4
Nn1g04407 Nelumbo nucifera HOM05D005597 ORTHO05D007304 3.3e-19 100.9 70 68.6
MBI01_g45400_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 2.0e-16 91.7 50 78.0
MBI01_g45631_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 3.4e-16 90.9 60 65.0
Potri.001G392050 Populus trichocarpa HOM05D005597 ORTHO05D007304 2.1e-13 81.6 49 75.5
Lsat_1_v5_gn_3_114580 Lactuca sativa HOM05D002100 ORTHO05D002310 1.1e-11 75.9 59 69.5
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 1.1e-09 69.3 300 26.0
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 3.4e-08 64.3 327 25.7
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 5.8e-08 63.5 306 26.8
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 1.3e-07 62.4 326 25.2
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 1.3e-07 62.4 431 24.6
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 2.9e-07 61.2 321 24.6
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 3.8e-07 60.8 297 24.9
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 4.9e-07 60.5 350 26.3
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 1.9e-06 58.5 395 24.3
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.9e-06 58.5 324 25.0
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 3.2e-06 57.8 313 25.9
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 3.2e-06 57.8 371 24.5
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 4.2e-06 57.4 324 25.0
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 4.2e-06 57.4 359 24.5


User provided reference genes

Program Settings