Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G269700 Glycine max HOM05D007610 ORTHO05D009592 1.6e-35 152.1 72 100.0
Glyma.12G229900 Glycine max HOM05D007610 ORTHO05D009592 4.6e-35 150.6 72 98.6
Phvul.005G082100 Phaseolus vulgaris HOM05D007610 ORTHO05D009592 6.7e-34 146.7 72 94.4
Manes.06G155800 Manihot esculenta HOM05D007610 ORTHO05D009592 8.7e-34 146.4 72 93.1
PGR083G1775 Punica granatum HOM05D007610 ORTHO05D009592 1.5e-33 145.6 72 93.1
Gohir.A08G224300 Gossypium hirsutum HOM05D007610 ORTHO05D009592 2.5e-33 144.8 72 94.4
Gohir.D08G244600 Gossypium hirsutum HOM05D007610 ORTHO05D009592 2.5e-33 144.8 72 94.4
Gorai.004G260900 Gossypium raimondii HOM05D007610 ORTHO05D009592 2.5e-33 144.8 72 94.4
MELO3C012466.2 Cucumis melo HOM05D007610 ORTHO05D009592 5.6e-33 143.7 72 91.7
CsaV3_5G036700 Cucumis sativus L. HOM05D007610 ORTHO05D009592 5.6e-33 143.7 72 91.7
Thecc.05G204400 Theobroma cacao HOM05D007610 ORTHO05D009592 7.4e-33 143.3 72 93.1
CDE07G1447 Ceratophyllum demersum HOM05D007610 ORTHO05D009592 9.6e-33 142.9 72 90.3
CAN.G1008.28 Capsicum annuum HOM05D007610 ORTHO05D009592 1.3e-32 142.5 72 91.7
Sed0022524 Sechium edule HOM05D007610 ORTHO05D009592 1.3e-32 142.5 72 90.3
Duzib128G1002 Durio zibethinus HOM05D007610 ORTHO05D009592 1.6e-32 142.1 72 91.7
Sed0001467 Sechium edule HOM05D007610 ORTHO05D009592 1.6e-32 142.1 72 90.3
Potri.008G010300 Populus trichocarpa HOM05D007610 ORTHO05D009592 2.8e-32 141.4 72 90.3
CiPaw.10G111700 Carya illinoinensis HOM05D007610 ORTHO05D009592 3.7e-32 141.0 72 93.1
Eucgr.H00670 Eucalyptus grandis HOM05D007610 ORTHO05D009592 3.7e-32 141.0 72 93.1
arahy.Tifrunner.gnm1.ann1.TJ8EEM Arachis hypogaea HOM05D007610 ORTHO05D009592 6.2e-32 140.2 72 91.7
arahy.Tifrunner.gnm1.ann1.Z969QS Arachis hypogaea HOM05D007610 ORTHO05D009592 6.2e-32 140.2 72 91.7
Ah.09g231800 Amaranthus hybridus HOM05D007610 ORTHO05D009592 1.4e-31 139.0 72 88.9
GSVIVG01015971001 Vitis vinifera HOM05D007610 ORTHO05D009592 1.4e-31 139.0 72 91.7
GSVIVG01015989001 Vitis vinifera HOM05D007610 ORTHO05D009592 1.4e-31 139.0 72 91.7
ATR0743G067 Amborella trichopoda HOM05D007610 ORTHO05D009592 1.8e-31 138.7 72 90.3
Nn4g24567 Nelumbo nucifera HOM05D007610 ORTHO05D009592 1.8e-31 138.7 72 90.3
Potri.010G248800 Populus trichocarpa HOM05D007610 ORTHO05D009592 2.4e-31 138.3 72 88.9
Sopen03g036810 Solanum pennellii HOM05D007610 ORTHO05D009592 2.4e-31 138.3 72 87.5
PGSC0003DMG400014163 Solanum tuberosum HOM05D007610 ORTHO05D009592 2.4e-31 138.3 72 87.5
Atru.chr1.2755 Acer truncatum HOM05D007610 ORTHO05D009592 3.1e-31 137.9 72 90.3
CANSAT56G1772 Cannabis sativa HOM05D007610 ORTHO05D009592 3.1e-31 137.9 72 88.9
Lj6g0018100 Lotus japonicus HOM05D007610 ORTHO05D009592 4.0e-31 137.5 72 88.9
Prupe.1G386000 Prunus persica HOM05D007610 ORTHO05D009592 4.0e-31 137.5 72 90.3
PSO675G0688 Papaver somniferum HOM05D007610 ORTHO05D009592 5.3e-31 137.1 72 88.9
PSO732G0180 Papaver somniferum HOM05D007610 ORTHO05D009592 5.3e-31 137.1 72 88.9
TWI75G0175 Tripterygium wilfordii HOM05D007610 ORTHO05D009592 5.3e-31 137.1 72 88.9
EL10Ac8g19396 Beta vulgaris HOM05D007610 ORTHO05D009592 6.9e-31 136.7 72 86.1
Solyc03g117900.3 Solanum lycopersicum HOM05D007610 ORTHO05D009592 1.2e-30 136.0 72 86.1
Lalb_Chr01g0016601 Lupinus albus HOM05D007610 ORTHO05D009592 1.5e-30 135.6 72 88.9
Psat5g237320 Pisum sativum HOM05D007610 ORTHO05D009592 1.5e-30 135.6 71 88.7
CARHR011080 Cardamine hirsuta HOM05D007610 ORTHO05D009592 2.6e-30 134.8 72 87.5
Peaxi162Scf00314g00832 Petunia axillaris HOM05D007610 ORTHO05D009592 2.6e-30 134.8 72 86.1
BolC8t52386H Brassica oleracea HOM05D007610 ORTHO05D009592 3.4e-30 134.4 72 87.5
Sc10g0005460 Simmondsia chinensis HOM05D007610 ORTHO05D009592 3.4e-30 134.4 72 86.1
AL1G21800 Arabidopsis lyrata HOM05D007610 ORTHO05D009592 4.5e-30 134.0 72 87.5
CSS0020010 Camellia sinensis var. sinensis HOM05D007610 ORTHO05D009592 4.5e-30 134.0 72 88.9
Dinv13690 Davidia involucrata HOM05D007610 ORTHO05D009592 4.5e-30 134.0 72 87.5
Aa31LG1G3990 Aethionema arabicum HOM05D007610 ORTHO05D009592 5.8e-30 133.7 72 87.5
AT1G10865 Arabidopsis thaliana HOM05D007610 ORTHO05D009592 5.8e-30 133.7 72 87.5
A09p64730 Brassica napus HOM05D007610 ORTHO05D009592 5.8e-30 133.7 72 87.5
C08p48470 Brassica napus HOM05D007610 ORTHO05D009592 5.8e-30 133.7 72 87.5
BraA09t41821Z Brassica rapa HOM05D007610 ORTHO05D009592 5.8e-30 133.7 72 87.5
CSS0005029 Camellia sinensis var. sinensis HOM05D007610 ORTHO05D009592 5.8e-30 133.7 72 88.9
Thhalv10009851m.g Eutrema salsugineum HOM05D007610 ORTHO05D009592 5.8e-30 133.7 72 87.5
Sp1g09560 Schrenkiella parvula HOM05D007610 ORTHO05D009592 5.8e-30 133.7 72 87.5
Zm00001eb102930 Zea mays HOM05D007610 ORTHO05D009592 5.8e-30 133.7 72 87.5
HanXRQChr05g0157571 Helianthus annuus HOM05D007610 ORTHO05D009592 7.6e-30 133.3 72 87.5
HanXRQChr06g0174541 Helianthus annuus HOM05D007610 ORTHO05D009592 7.6e-30 133.3 72 87.5
MD08G1038400 Malus domestica HOM05D007610 ORTHO05D009592 7.6e-30 133.3 72 86.1
Cc04_g05530 Coffea canephora HOM05D007610 ORTHO05D009592 1.0e-29 132.9 72 87.5
Hma1.2p1_0338F.1_g129570 Hydrangea macrophylla HOM05D007610 ORTHO05D009592 2.2e-29 131.7 72 86.1
Lsat_1_v5_gn_1_30601 Lactuca sativa HOM05D007610 ORTHO05D009592 2.9e-29 131.3 72 86.1
Actinidia18276 Actinidia chinensis HOM05D007610 ORTHO05D009592 3.8e-29 131.0 72 86.1
Lalb_Chr20g0109261 Lupinus albus HOM05D007610 ORTHO05D009592 3.8e-29 131.0 72 84.7
ECA246G4312 Erigeron canadensis HOM05D007610 ORTHO05D009592 6.5e-29 130.2 70 87.1
Migut.I00647 Erythranthe guttata HOM05D007610 ORTHO05D009592 8.4e-29 129.8 72 86.1
THA.LOC104823659 Tarenaya hassleriana HOM05D007610 ORTHO05D009592 8.4e-29 129.8 72 86.1
FAN27G3309 Fragaria x ananassa HOM05D003072 ORTHO05D009592 1.9e-28 128.6 72 84.7
MSTRG.11209 Avicennia marina HOM05D007610 ORTHO05D009592 2.5e-28 128.3 72 83.3
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 2.5e-28 128.3 69 87.0
RcHm_v2.0_Chr6g0300241 Rosa chinensis HOM05D007610 ORTHO05D009592 7.1e-28 126.7 72 83.3
Mapoly0035s0053 Marchantia polymorpha HOM05D007610 ORTHO05D009592 2.1e-27 125.2 72 79.2
TPR.G1215 Trifolium pratense HOM05D007610 ORTHO05D009592 6.0e-27 123.6 97 66.0
VMungo1080G1821 Vigna mungo HOM05D007610 ORTHO05D009592 8.7e-26 119.8 61 86.9
Ciclev10017354m.g Citrus clementina HOM05D007610 ORTHO05D009592 1.5e-25 119.0 58 93.1
AagrBONN_evm.TU.Sc2ySwM_228.2676 Anthoceros agrestis HOM05D007610 ORTHO05D009592 2.5e-25 118.2 72 75.0
CBR_g23045 Chara braunii HOM05D007610 ORTHO05D009592 1.3e-24 115.9 72 73.6
HPP92_003445 Vanilla planifolia HOM05D007610 ORTHO05D009592 1.6e-24 115.5 63 84.1
AagrBONN_evm.TU.Sc2ySwM_344.3800 Anthoceros agrestis HOM05D007610 ORTHO05D009592 2.8e-24 114.8 72 72.2
MD00G1038600 Malus domestica HOM05D007610 ORTHO05D009592 4.8e-24 114.0 64 82.8
Cpa.g.c36937 Carica papaya HOM05D007610 ORTHO05D009592 1.4e-23 112.5 58 89.7
Nitab4.5_0007669g0050 Nicotiana tabacum HOM05D007610 ORTHO05D009592 3.1e-23 111.3 63 81.0
Medtr2g076300 Medicago truncatula HOM05D007610 ORTHO05D009592 9.0e-23 109.8 61 80.3
Nitab4.5_0000976g0340 Nicotiana tabacum HOM05D007610 ORTHO05D009592 1.2e-22 109.4 59 83.1
Sabra08G0006100 Salix brachista HOM05D002706 ORTHO05D003253 5.8e-22 107.1 58 84.5
Actinidia08923 Actinidia chinensis HOM05D007610 ORTHO05D009592 7.6e-22 106.7 58 86.2
Carub.0001s1040 Capsella rubella HOM05D007610 ORTHO05D009592 2.2e-21 105.1 58 82.8
FvH4_2g40490 Fragaria vesca HOM05D007610 ORTHO05D009592 6.5e-21 103.6 58 82.8
Duzib106G1141 Durio zibethinus HOM05D007610 ORTHO05D009592 1.1e-20 102.8 60 81.7
DCAR_021387 Daucus carota HOM05D007610 ORTHO05D009592 1.4e-20 102.4 59 78.0
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 2.1e-19 98.6 58 79.3
Migut.K01190 Erythranthe guttata HOM05D007610 ORTHO05D009592 2.7e-19 98.2 58 81.0
Dinv23251 Davidia involucrata HOM05D007610 ORTHO05D009592 3.3e-17 91.3 49 85.7
Oeu036461.1 Olea europaea HOM05D007610 ORTHO05D009592 6.3e-16 87.0 64 68.8
Oeu036457.1 Olea europaea HOM05D007610 ORTHO05D009592 3.1e-15 84.7 64 67.2
ClCG05G026760 Citrullus lanatus HOM05D007610 ORTHO05D009592 6.9e-15 83.6 43 88.4
MCO01G475 Micromonas commoda HOM05D007610 ORTHO05D009592 3.8e-13 77.8 72 52.8
SHI04239 Sapria himalayana HOM05D007610 ORTHO05D009592 1.4e-12 75.9 73 50.7
Cre01.g069107 Chlamydomonas reinhardtii HOM05D007610 ORTHO05D009592 7.2e-12 73.6 69 46.4
PRCOL_00003475 Prasinoderma coloniale HOM05D007610 ORTHO05D009592 1.6e-11 72.4 72 51.4
Pp3c10_17250 Physcomitrium patens HOM05D007610 ORTHO05D009592 5.1e-10 67.4 64 48.4


User provided reference genes

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