Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 9.9e-250 866.3 432 100.0
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 3.3e-221 771.5 432 90.5
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 1.8e-211 739.2 432 85.9
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 2.0e-210 735.7 432 85.9
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 2.3e-206 722.2 432 84.7
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 6.9e-203 710.7 432 82.6
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 1.2e-202 709.9 431 82.8
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 2.6e-202 708.8 432 81.7
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 4.5e-202 708.0 432 81.9
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 2.5e-200 702.2 424 83.0
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 5.5e-192 674.5 427 78.7
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 1.2e-191 673.3 427 78.5
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 2.3e-190 669.1 433 77.1
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 2.0e-189 666.0 427 78.0
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 2.5e-184 649.0 433 74.8
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 7.2e-184 647.5 430 74.9
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 1.6e-183 646.4 433 75.5
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 2.1e-183 646.0 434 75.6
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 3.6e-183 645.2 433 75.3
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 3.6e-183 645.2 431 75.9
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 1.0e-182 643.7 428 75.7
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 1.4e-182 643.3 434 75.3
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 2.3e-182 642.5 430 74.9
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 6.7e-182 641.0 430 75.1
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 8.8e-182 640.6 435 74.9
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 8.8e-182 640.6 428 75.2
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 3.3e-181 638.6 428 74.1
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 4.4e-181 638.3 428 75.2
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 5.7e-181 637.9 429 74.6
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 7.5e-181 637.5 427 73.3
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 1.3e-180 636.7 432 74.5
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.7e-180 636.3 426 74.2
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 2.2e-180 636.0 432 73.1
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.2e-180 636.0 433 73.7
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 2.8e-180 635.6 433 73.2
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 1.1e-179 633.6 424 74.3
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 1.4e-179 633.3 425 74.4
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.8e-179 632.9 441 71.0
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 3.1e-179 632.1 433 73.7
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 4.1e-179 631.7 434 72.4
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 5.3e-179 631.3 433 70.9
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 5.3e-179 631.3 427 73.5
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 5.3e-179 631.3 433 72.5
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 5.3e-179 631.3 434 71.9
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 5.3e-179 631.3 428 72.2
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 1.2e-178 630.2 432 73.1
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 1.6e-178 629.8 432 72.2
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 1.6e-178 629.8 434 71.7
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 2.0e-178 629.4 429 73.2
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 5.9e-178 627.9 429 72.7
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 5.9e-178 627.9 429 72.7
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 1.0e-177 627.1 475 68.4
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 1.0e-177 627.1 432 73.4
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 2.2e-177 625.9 433 71.6
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 2.2e-177 625.9 433 71.1
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 1.1e-176 623.6 432 72.7
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 1.9e-176 622.9 432 71.3
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 7.2e-176 620.9 427 72.6
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 7.2e-176 620.9 432 71.8
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 7.2e-176 620.9 433 71.1
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 9.4e-176 620.5 425 72.2
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 1.6e-175 619.8 425 72.2
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 2.1e-175 619.4 434 71.9
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 6.1e-175 617.8 434 71.2
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 8.0e-175 617.5 419 73.3
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 1.8e-174 616.3 432 70.4
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 3.0e-174 615.5 434 71.9
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 6.8e-174 614.4 431 69.8
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 6.8e-174 614.4 426 71.6
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 6.8e-174 614.4 433 71.1
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 8.8e-174 614.0 426 71.1
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 1.2e-173 613.6 427 73.3
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 1.2e-173 613.6 427 73.3
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 1.5e-173 613.2 433 71.1
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 1.5e-173 613.2 429 71.3
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 2.6e-173 612.5 433 71.6
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 2.6e-173 612.5 433 71.6
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 3.4e-173 612.1 425 72.0
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 4.4e-173 611.7 431 71.9
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 5.7e-173 611.3 432 71.1
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 5.7e-173 611.3 425 71.8
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 7.5e-173 610.9 421 72.2
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 2.2e-172 609.4 433 70.9
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 2.8e-172 609.0 434 70.3
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 2.8e-172 609.0 423 72.1
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 5.4e-171 604.7 445 68.8
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 7.0e-171 604.4 470 65.1
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 9.1e-171 604.0 425 69.9
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 1.6e-170 603.2 420 70.5
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 1.1e-168 597.0 433 69.7
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 1.9e-168 596.3 426 70.2
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 7.2e-168 594.3 424 70.3
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 9.5e-168 594.0 432 70.4
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 8.0e-167 590.9 427 70.3
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 4.0e-166 588.6 441 68.9
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 6.8e-166 587.8 412 70.1
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 1.5e-165 586.6 394 73.9
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 5.7e-165 584.7 436 68.3
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.7e-164 583.2 428 69.4
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 4.1e-163 578.6 425 67.5
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 1.2e-162 577.0 419 69.5
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 6.6e-161 571.2 427 66.0
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 1.5e-160 570.1 436 65.8
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 5.6e-160 568.2 421 66.3
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 4.7e-159 565.1 453 63.1
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 1.2e-157 560.5 517 58.4
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 5.4e-155 551.6 421 66.3
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 3.5e-154 548.9 384 71.6
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 1.0e-153 547.4 414 65.2
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 2.5e-152 542.7 391 69.1
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 4.7e-151 538.5 374 71.7
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 3.1e-150 535.8 374 71.4
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 1.3e-148 530.4 441 63.9
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 1.7e-148 530.0 429 63.9
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 4.3e-144 515.4 425 64.0
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 9.2e-139 497.7 412 63.3
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 1.3e-137 493.8 438 57.1
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 1.9e-136 490.0 436 61.5
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 9.5e-136 487.6 437 57.4
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 1.1e-131 474.2 420 58.1
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 1.1e-128 464.2 414 56.5
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 5.6e-128 461.8 336 68.5
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 7.6e-125 451.4 433 55.4
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 1.7e-124 450.3 270 83.7
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 3.4e-117 426.0 387 59.2
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 2.4e-110 403.3 392 57.4
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 1.5e-101 374.0 437 46.5
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 2.5e-99 366.7 438 46.8
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 4.6e-98 362.5 274 69.3
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 1.3e-97 360.9 273 69.2
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 3.7e-95 352.8 209 79.4
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 4.1e-94 349.4 209 80.9
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 2.6e-93 346.7 456 43.0
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 4.2e-91 339.3 256 65.2
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 6.1e-90 335.5 202 80.2
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 3.7e-87 326.2 435 44.1
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 6.3e-79 298.9 433 42.3
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 2.0e-77 293.9 453 39.5
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 8.0e-74 282.0 156 85.3
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 6.5e-68 262.3 390 41.3
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 1.6e-66 257.7 155 77.4
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 2.3e-65 253.8 317 45.7
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 1.1e-62 245.0 446 37.9
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 1.2e-58 231.5 201 62.2
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 2.1e-58 230.7 129 86.8
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 3.0e-57 226.9 278 49.3
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 9.8e-56 221.9 223 58.3
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 6.3e-55 219.2 351 41.0
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 1.1e-54 218.4 221 57.9
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 1.0e-52 211.8 218 55.0
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 5.4e-46 189.5 123 70.7
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 4.9e-31 139.8 178 44.4
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 3.2e-30 137.1 299 32.4
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 1.7e-28 131.3 85 75.3
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 9.9e-24 115.5 77 72.7
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 3.7e-23 113.6 77 72.7
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 1.9e-22 111.3 327 27.8
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 6.0e-21 106.3 103 50.5
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 1.7e-20 104.8 66 72.7
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 6.6e-20 102.8 57 80.7
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 2.5e-19 100.9 55 81.8
BcaC01g01527 Brassica carinata HOM05D004141 ORTHO05D009181 1.1e-14 85.5 55 78.2
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 2.3e-12 77.8 48 70.8
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 2.1e-10 71.2 41 73.2
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 6.2e-10 69.7 43 69.8
PRCOL_00001337 Prasinoderma coloniale HOM05D003378 ORTHO05D003942 5.3e-09 66.6 114 34.2
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 4.4e-08 63.5 132 32.6
BraA07t30620Z Brassica rapa HOM05D000783 ORTHO05D000705 8.4e-07 59.3 158 28.5
A07p29820 Brassica napus HOM05D000783 ORTHO05D000705 1.1e-06 58.9 158 28.5
C06p34030 Brassica napus HOM05D000783 ORTHO05D000705 1.1e-06 58.9 158 28.5
BolC6t38519H Brassica oleracea HOM05D000783 ORTHO05D000705 1.1e-06 58.9 158 28.5
BraA07t31483Z Brassica rapa HOM05D000783 ORTHO05D000705 2.4e-06 57.8 158 28.5
BcaC08g46761 Brassica carinata HOM05D000783 ORTHO05D000705 3.2e-06 57.4 158 28.5
A07p39340 Brassica napus HOM05D000783 ORTHO05D000705 3.2e-06 57.4 158 28.5
C06p47570 Brassica napus HOM05D000783 ORTHO05D000705 3.2e-06 57.4 158 28.5
BolC6t39795H Brassica oleracea HOM05D000783 ORTHO05D000705 3.2e-06 57.4 158 28.5
MD05G1191300 Malus domestica HOM05D002084 ORTHO05D002031 3.2e-06 57.4 53 58.5
RcHm_v2.0_Chr4g0402621 Rosa chinensis HOM05D004141 ORTHO05D344211 3.2e-06 57.4 45 73.3
Prupe.4G169100 Prunus persica HOM05D004141 ORTHO05D005416 5.4e-06 56.6 53 56.6
ATR0807G093 Amborella trichopoda HOM05D000783 ORTHO05D000705 7.1e-06 56.2 153 27.5


User provided reference genes

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