Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 7.6e-172 607.1 305 100.0
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 1.0e-155 553.5 302 90.7
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 3.0e-136 488.8 304 78.6
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 3.0e-136 488.8 304 78.6
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 5.7e-135 484.6 304 78.3
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 6.3e-134 481.1 303 79.5
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 6.3e-134 481.1 303 79.5
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 3.8e-131 471.9 308 76.6
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 9.1e-125 450.7 300 74.7
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 8.5e-123 444.1 275 77.5
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 1.2e-116 423.7 307 70.0
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 5.0e-115 418.3 311 69.5
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 9.5e-114 414.1 308 67.9
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 1.6e-113 413.3 305 69.5
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 2.8e-113 412.5 308 67.9
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 4.7e-113 411.8 313 67.7
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 8.0e-113 411.0 313 66.8
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 1.0e-112 410.6 308 69.8
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 1.0e-112 410.6 311 65.6
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 1.8e-112 409.8 307 67.4
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 2.3e-112 409.5 309 68.3
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 3.0e-112 409.1 308 69.8
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 5.2e-112 408.3 307 69.4
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 5.2e-112 408.3 314 67.8
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 8.9e-112 407.5 308 66.2
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.2e-111 407.1 307 67.4
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 3.4e-111 405.6 311 65.3
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 7.5e-111 404.4 308 67.5
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 9.8e-111 404.1 311 65.9
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 1.3e-110 403.7 305 69.8
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.7e-110 403.3 319 63.9
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 3.7e-110 402.1 322 64.6
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 6.4e-110 401.4 308 65.9
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 8.3e-110 401.0 311 65.3
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 8.3e-110 401.0 307 67.8
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 1.1e-109 400.6 311 66.9
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 2.4e-109 399.4 311 65.0
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 2.4e-109 399.4 315 66.0
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 3.2e-109 399.1 308 65.6
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 4.1e-109 398.7 307 66.1
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 1.2e-108 397.1 308 65.6
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 2.0e-108 396.4 309 65.4
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 4.6e-108 395.2 304 67.4
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 5.9e-108 394.8 310 63.9
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 7.8e-108 394.4 335 61.5
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.7e-107 393.3 281 69.8
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 8.6e-107 391.0 309 63.8
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.9e-106 389.8 308 64.6
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 3.3e-106 389.0 304 65.5
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 7.3e-106 387.9 268 71.6
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 4.7e-105 385.2 316 62.7
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 6.2e-105 384.8 302 63.2
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.8e-104 383.3 306 62.4
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 2.3e-104 382.9 311 62.1
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 4.0e-104 382.1 311 62.4
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 8.9e-104 380.9 308 62.7
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 1.5e-103 380.2 311 63.0
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 2.0e-103 379.8 314 60.8
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 3.4e-103 379.0 312 62.5
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 9.8e-103 377.5 302 63.6
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 8.3e-102 374.4 309 62.1
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 1.9e-101 373.2 282 65.6
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 1.2e-100 370.5 280 66.4
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 1.6e-100 370.2 276 64.9
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 7.8e-100 367.9 309 60.5
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.7e-99 366.7 313 60.4
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 3.9e-99 365.5 302 61.3
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 5.0e-99 365.2 306 62.4
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 8.6e-99 364.4 306 62.7
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 1.9e-98 363.2 307 60.3
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 2.5e-98 362.8 281 63.7
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 4.3e-98 362.1 311 61.1
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 4.3e-98 362.1 314 60.5
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 7.3e-98 361.3 315 58.4
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 7.3e-98 361.3 310 59.0
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 1.6e-97 360.1 280 63.2
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 2.1e-97 359.8 281 60.1
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 6.8e-96 354.8 322 55.9
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 4.9e-94 348.6 324 56.5
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 4.1e-93 345.5 310 56.1
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 1.6e-92 343.6 240 73.3
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 2.1e-92 343.2 309 58.3
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 2.7e-92 342.8 270 63.3
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 4.6e-92 342.0 275 66.5
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 2.3e-91 339.7 292 61.0
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 2.5e-90 336.3 327 56.0
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 2.5e-90 336.3 307 58.0
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 2.1e-89 333.2 327 55.4
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 4.7e-89 332.0 242 71.9
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 1.2e-87 327.4 308 56.5
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 1.5e-87 327.0 310 56.5
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 4.4e-87 325.5 248 63.7
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 9.9e-87 324.3 309 54.7
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 3.8e-86 322.4 308 55.5
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 4.9e-86 322.0 303 57.1
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 4.9e-86 322.0 310 56.1
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 4.9e-86 322.0 218 74.8
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 6.4e-86 321.6 276 60.5
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 1.4e-85 320.5 308 55.2
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 1.9e-85 320.1 310 55.5
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 3.2e-85 319.3 308 54.9
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 5.4e-85 318.5 310 55.8
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 7.1e-85 318.2 310 55.8
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 9.2e-85 317.8 310 54.8
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.2e-84 317.4 310 55.5
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 1.6e-84 317.0 310 55.5
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 2.1e-84 316.6 310 55.5
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 2.7e-84 316.2 310 55.8
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 2.7e-84 316.2 306 54.9
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 1.0e-83 314.3 310 55.2
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 1.0e-83 314.3 310 54.8
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 1.3e-83 313.9 310 55.5
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 5.1e-83 312.0 235 68.9
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 4.7e-81 305.4 295 58.3
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 8.1e-81 304.7 268 61.6
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 3.4e-79 299.3 261 60.5
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 2.4e-77 293.1 279 54.1
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 5.1e-75 285.4 283 51.2
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 1.2e-71 274.2 276 51.4
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 4.5e-71 272.3 277 49.8
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 1.9e-69 266.9 316 47.5
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 3.3e-58 229.6 199 57.8
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 1.6e-49 200.7 194 58.2
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.2e-46 190.3 132 67.4
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 9.3e-45 184.9 278 40.3
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 4.3e-42 176.0 169 56.2
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 6.5e-38 162.2 109 70.6
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 6.5e-38 162.2 113 69.9
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 1.2e-36 157.9 136 60.3
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 3.6e-36 156.4 107 70.1
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 1.8e-11 74.3 243 30.5
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 6.8e-11 72.4 138 37.7


User provided reference genes

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