Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 1.9e-175 619.0 305 100.0
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 1.8e-149 532.7 305 86.9
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 9.4e-138 493.8 306 80.4
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 4.2e-130 468.4 285 83.5
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 3.8e-123 445.3 309 75.1
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 1.9e-122 443.0 308 74.0
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 1.3e-118 430.3 310 72.9
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 1.1e-117 427.2 305 71.5
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 5.9e-116 421.4 309 71.8
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 5.0e-115 418.3 309 71.8
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 1.9e-101 373.2 297 63.0
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 2.8e-97 359.4 301 61.1
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 1.8e-96 356.7 318 59.4
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 1.5e-95 353.6 300 60.7
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 2.0e-95 353.2 287 62.0
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 2.6e-95 352.8 302 60.6
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 3.4e-95 352.4 304 59.2
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 4.4e-95 352.1 301 60.1
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 3.7e-94 349.0 289 61.9
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 4.9e-94 348.6 301 58.5
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 4.9e-94 348.6 300 59.3
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 6.4e-94 348.2 297 58.9
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 6.4e-94 348.2 297 60.3
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 1.4e-93 347.1 292 60.3
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 2.4e-93 346.3 300 58.3
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 3.2e-93 345.9 290 60.3
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 7.1e-93 344.7 296 59.1
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 9.2e-93 344.4 300 59.0
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 1.2e-92 344.0 295 60.0
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 1.2e-92 344.0 296 59.5
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 1.6e-92 343.6 302 59.6
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 3.5e-92 342.4 297 58.6
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 4.6e-92 342.0 300 60.0
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 6.0e-92 341.7 297 60.9
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 7.8e-92 341.3 297 60.3
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 1.1e-90 337.4 289 57.1
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 1.5e-90 337.0 289 57.4
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 1.9e-90 336.7 289 56.7
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 1.9e-90 336.7 295 57.6
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 2.5e-90 336.3 292 58.9
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 4.3e-90 335.5 300 60.0
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 2.8e-89 332.8 290 57.2
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 2.8e-89 332.8 289 58.8
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 4.7e-89 332.0 289 55.7
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 4.7e-89 332.0 299 57.5
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 1.1e-88 330.9 289 57.1
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 1.8e-88 330.1 298 55.7
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 3.1e-88 329.3 286 58.0
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 4.0e-88 328.9 292 57.2
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 1.5e-87 327.0 289 56.4
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.5e-87 327.0 295 57.6
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 1.5e-87 327.0 304 57.9
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 1.5e-87 327.0 289 55.7
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 2.0e-87 326.6 293 57.7
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 2.6e-87 326.2 297 55.2
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 2.6e-87 326.2 321 55.1
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 2.9e-86 322.8 307 54.1
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 1.4e-85 320.5 297 56.9
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 3.2e-85 319.3 298 54.7
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 5.4e-85 318.5 290 55.2
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 5.4e-85 318.5 294 57.5
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 2.7e-84 316.2 299 56.9
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 3.5e-84 315.8 273 60.1
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 4.6e-84 315.5 286 57.7
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 5.1e-83 312.0 312 52.9
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 1.9e-82 310.1 294 53.1
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 2.5e-82 309.7 292 55.1
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 8.1e-81 304.7 304 52.3
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 1.4e-80 303.9 311 51.1
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 5.2e-80 302.0 296 53.0
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 2.6e-79 299.7 293 53.6
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 1.4e-77 293.9 287 53.0
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 1.9e-77 293.5 289 53.3
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 5.4e-77 292.0 276 57.6
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 9.3e-77 291.2 300 53.3
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 1.2e-76 290.8 271 55.4
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 1.7e-75 287.0 297 54.5
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 3.0e-75 286.2 296 53.4
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 3.3e-74 282.7 280 53.2
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 5.6e-74 282.0 219 62.1
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 2.0e-71 273.5 294 50.3
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 5.8e-71 271.9 292 51.0
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 1.7e-70 270.4 253 56.5
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 9.3e-69 264.6 283 51.2
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 3.5e-68 262.7 314 49.7
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 6.0e-68 261.9 343 43.4
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 6.9e-64 248.4 294 50.0
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 1.5e-63 247.3 174 67.8
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 1.4e-61 240.7 171 64.9
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 5.5e-61 238.8 283 47.0
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 1.6e-60 237.3 172 66.3
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 2.3e-59 233.4 301 45.8
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 8.2e-57 224.9 297 43.8
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 1.8e-56 223.8 296 40.9
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.4e-56 223.4 296 42.9
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 2.4e-56 223.4 278 45.3
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.5e-55 219.2 159 64.8
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 4.9e-54 215.7 171 67.8
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 1.0e-51 208.0 291 41.2
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 3.0e-51 206.5 150 66.0
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 9.7e-50 201.4 294 41.5
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.1e-49 200.3 118 79.7
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.1e-49 200.3 118 79.7
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 9.0e-48 194.9 295 41.4
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 4.6e-44 182.6 270 42.2
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 8.7e-43 178.3 297 35.7
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.9e-42 177.2 295 41.0
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 3.3e-42 176.4 310 38.4
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 1.7e-41 174.1 102 79.4
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 8.2e-41 171.8 296 37.2
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.1e-40 171.4 301 38.2
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 3.4e-39 166.4 281 40.2
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 5.9e-39 165.6 301 37.9
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 7.7e-39 165.2 291 37.8
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 1.3e-38 164.5 102 74.5
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 8.5e-38 161.8 300 37.0
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 1.1e-37 161.4 176 49.4
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 1.9e-37 160.6 232 43.5
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 4.2e-37 159.5 304 35.9
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.2e-36 157.9 216 44.0
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 6.1e-36 155.6 95 77.9
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.3e-35 153.7 113 61.1
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.5e-34 151.0 189 43.4
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.1e-32 144.8 211 40.3
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 3.2e-29 133.3 148 49.3
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 8.2e-25 118.6 102 55.9
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 1.4e-24 117.9 114 55.3
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 2.7e-20 103.6 207 35.7
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 4.7e-20 102.8 50 96.0
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 7.5e-18 95.5 57 77.2
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 7.5e-18 95.5 144 43.1
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.8e-17 93.6 144 43.1
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 9.1e-16 88.6 50 82.0
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.1e-12 77.4 107 37.4
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 3.6e-12 76.6 74 60.8
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 4.4e-10 69.7 98 37.8
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 7.0e-08 62.4 62 56.5
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 9.1e-08 62.0 60 58.3
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 1.6e-07 61.2 50 68.0
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 2.0e-07 60.8 67 46.3


User provided reference genes

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