Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 1.3e-54 216.1 106 100.0
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 5.0e-46 187.6 93 97.8
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 5.4e-24 114.4 89 71.9
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 2.7e-23 112.1 65 89.2
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 4.6e-23 111.3 63 90.5
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 6.0e-23 110.9 63 88.9
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 6.0e-23 110.9 65 87.7
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 1.0e-22 110.2 63 88.9
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 1.3e-22 109.8 61 90.2
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 1.3e-22 109.8 61 90.2
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 1.3e-22 109.8 72 76.4
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 2.3e-22 109.0 62 90.3
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 2.3e-22 109.0 63 88.9
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 5.0e-22 107.8 62 87.1
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 8.6e-22 107.1 63 85.7
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 1.1e-21 106.7 60 90.0
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 1.1e-21 106.7 60 90.0
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 1.5e-21 106.3 60 88.3
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 1.5e-21 106.3 64 81.2
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 1.9e-21 105.9 68 80.9
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 2.5e-21 105.5 93 69.9
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 2.5e-21 105.5 68 80.9
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 3.3e-21 105.1 69 76.8
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 4.3e-21 104.8 70 77.1
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 4.3e-21 104.8 62 85.5
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 5.6e-21 104.4 70 77.1
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 5.6e-21 104.4 84 69.0
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 5.6e-21 104.4 61 86.9
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 7.3e-21 104.0 65 78.5
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 7.3e-21 104.0 91 63.7
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 9.5e-21 103.6 68 77.9
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 9.5e-21 103.6 62 82.3
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 9.5e-21 103.6 75 76.0
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 9.5e-21 103.6 94 62.8
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 1.2e-20 103.2 101 56.4
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 1.2e-20 103.2 68 76.5
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 1.2e-20 103.2 68 76.5
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 1.2e-20 103.2 68 76.5
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 1.2e-20 103.2 68 76.5
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 1.2e-20 103.2 68 80.9
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 1.2e-20 103.2 62 82.3
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 1.6e-20 102.8 61 83.6
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 1.6e-20 102.8 92 64.1
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 1.6e-20 102.8 69 75.4
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 2.1e-20 102.4 61 85.2
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 2.1e-20 102.4 61 83.6
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 2.1e-20 102.4 89 66.3
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 2.8e-20 102.1 69 75.4
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 2.8e-20 102.1 69 75.4
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 2.8e-20 102.1 62 83.9
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 2.8e-20 102.1 62 80.6
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 2.8e-20 102.1 71 74.6
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 3.6e-20 101.7 61 83.6
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 3.6e-20 101.7 69 75.4
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 4.7e-20 101.3 61 83.6
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 4.7e-20 101.3 61 83.6
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 4.7e-20 101.3 61 83.6
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 4.7e-20 101.3 65 80.0
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 4.7e-20 101.3 92 65.2
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 4.7e-20 101.3 92 65.2
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 6.2e-20 100.9 70 77.1
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 6.2e-20 100.9 70 77.1
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 6.2e-20 100.9 89 66.3
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 6.2e-20 100.9 63 81.0
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 8.1e-20 100.5 68 76.5
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 8.1e-20 100.5 63 82.5
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 1.1e-19 100.1 102 57.8
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 1.1e-19 100.1 60 83.3
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.1e-19 100.1 61 83.6
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 1.1e-19 100.1 99 58.6
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 1.4e-19 99.8 62 77.4
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 1.4e-19 99.8 64 76.6
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 1.4e-19 99.8 62 83.9
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 1.4e-19 99.8 62 83.9
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 1.4e-19 99.8 62 82.3
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 1.4e-19 99.8 62 83.9
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 1.8e-19 99.4 62 80.6
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 2.3e-19 99.0 64 76.6
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 2.3e-19 99.0 61 80.3
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 4.0e-19 98.2 61 82.0
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 4.0e-19 98.2 97 57.7
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 4.0e-19 98.2 85 63.5
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 5.2e-19 97.8 62 80.6
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 5.2e-19 97.8 62 80.6
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 6.8e-19 97.4 63 81.0
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 8.9e-19 97.1 70 72.9
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 8.9e-19 97.1 61 78.7
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 1.5e-18 96.3 111 53.2
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 2.0e-18 95.9 58 82.8
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 2.0e-18 95.9 62 77.4
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 2.0e-18 95.9 62 77.4
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 2.0e-18 95.9 62 79.0
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 2.6e-18 95.5 61 77.0
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 2.6e-18 95.5 61 78.7
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 2.6e-18 95.5 64 75.0
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 4.4e-18 94.7 62 77.4
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 5.8e-18 94.4 61 78.7
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 5.8e-18 94.4 61 78.7
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 5.8e-18 94.4 61 77.0
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 7.5e-18 94.0 56 82.1
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 7.5e-18 94.0 62 77.4
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 9.8e-18 93.6 66 72.7
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 1.3e-17 93.2 63 71.4
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.7e-17 92.8 62 75.8
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 4.9e-17 91.3 57 80.7
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 6.4e-17 90.9 59 76.3
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 1.1e-16 90.1 61 72.1
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 1.4e-16 89.7 50 90.0
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 9.2e-16 87.0 57 77.2
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 6.0e-15 84.3 73 64.4
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 1.5e-13 79.7 74 56.8
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 6.2e-12 74.3 70 58.6
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.1e-12 73.9 48 72.9
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 2.0e-10 69.3 37 91.9
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 5.8e-10 67.8 57 59.6
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 2.2e-09 65.9 56 62.5
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 4.6e-07 58.2 56 50.0
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 1.3e-06 56.6 55 56.4
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 3.0e-06 55.5 88 36.4
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 3.0e-06 55.5 41 68.3


User provided reference genes

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