Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 5.6e-104 380.9 192 100.0
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 1.5e-96 356.3 192 91.7
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 8.1e-87 323.9 187 85.0
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 9.0e-86 320.5 189 83.6
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 7.6e-85 317.4 187 82.9
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 4.9e-84 314.7 189 81.0
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 8.4e-84 313.9 183 83.6
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-83 313.2 183 83.6
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 7.9e-82 307.4 192 81.8
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.3e-81 305.8 188 82.4
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.7e-79 298.5 182 78.0
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 6.2e-79 297.7 182 77.5
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 6.2e-79 297.7 182 77.5
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 1.1e-78 297.0 182 77.5
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 4.0e-78 295.0 172 82.0
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 5.3e-78 294.7 186 75.3
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.2e-77 293.5 182 79.7
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 3.4e-77 292.0 183 77.0
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 4.5e-77 291.6 182 79.1
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 5.8e-77 291.2 187 75.4
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 1.3e-76 290.0 182 76.4
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.7e-76 289.7 182 79.1
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 3.8e-76 288.5 183 75.4
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 4.2e-75 285.0 183 77.6
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.2e-74 283.5 182 74.2
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 1.2e-74 283.5 182 73.1
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.6e-74 283.1 171 78.4
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 7.9e-74 280.8 169 79.9
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 7.9e-74 280.8 176 76.7
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.3e-73 280.0 182 74.2
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 1.8e-73 279.6 172 77.9
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.3e-73 279.3 182 74.2
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 6.7e-73 277.7 182 72.0
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 6.7e-73 277.7 182 72.5
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 6.7e-73 277.7 182 72.5
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 6.7e-73 277.7 171 76.6
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.7e-73 277.7 171 76.6
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 8.7e-73 277.3 185 73.0
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 1.1e-72 276.9 182 71.4
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 1.1e-72 276.9 185 72.4
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.1e-72 276.9 183 73.2
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.5e-72 276.6 182 74.2
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.5e-72 275.8 181 72.9
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 5.6e-72 274.6 182 71.4
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.3e-71 273.5 182 70.9
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 1.3e-71 273.5 182 71.4
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 3.7e-71 271.9 187 72.7
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 6.2e-71 271.2 182 69.8
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 6.2e-71 271.2 182 69.8
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 6.2e-71 271.2 182 69.8
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 8.2e-71 270.8 182 69.8
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 1.4e-70 270.0 171 74.9
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 3.1e-70 268.9 182 72.5
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 5.3e-70 268.1 182 70.3
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 5.3e-70 268.1 170 75.9
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 6.9e-70 267.7 183 69.9
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 6.9e-70 267.7 183 72.7
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 2.6e-69 265.8 182 69.8
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 3.4e-69 265.4 170 74.1
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 3.4e-69 265.4 168 76.8
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.0e-68 263.8 170 74.1
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.3e-68 263.5 181 76.8
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.3e-68 263.5 170 74.1
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 2.2e-68 262.7 179 70.9
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 2.9e-68 262.3 181 70.2
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.8e-68 261.9 170 74.1
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.8e-68 261.9 170 74.1
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 4.9e-68 261.5 158 78.5
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 4.9e-68 261.5 169 74.6
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 4.9e-68 261.5 170 72.9
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 6.5e-68 261.2 169 73.4
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 1.9e-67 259.6 182 68.7
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.5e-67 259.2 186 67.7
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 2.5e-67 259.2 186 67.7
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.5e-67 259.2 186 67.7
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 5.5e-67 258.1 172 72.1
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.5e-67 258.1 185 69.2
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 1.6e-66 256.5 170 72.9
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.7e-66 255.8 159 76.1
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 4.6e-66 255.0 182 67.6
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 4.6e-66 255.0 170 72.9
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 6.0e-66 254.6 169 72.2
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.0e-65 253.8 170 68.8
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.3e-65 253.4 173 70.5
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.3e-65 253.4 173 69.4
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 1.8e-65 253.1 170 68.8
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 1.1e-64 250.4 167 73.1
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.1e-64 250.4 172 71.5
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.1e-64 250.4 168 70.2
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.9e-64 249.6 172 70.3
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 7.4e-64 247.7 176 64.8
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 7.4e-64 247.7 173 69.4
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.3e-63 246.9 170 67.6
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.6e-63 246.5 170 68.2
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.8e-63 245.7 159 74.8
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.8e-63 245.7 178 65.2
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 3.7e-63 245.4 178 66.3
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 2.4e-62 242.7 180 65.0
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 3.1e-62 242.3 164 70.7
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 4.1e-62 241.9 183 61.7
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 9.0e-62 240.7 172 68.0
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 9.0e-62 240.7 172 68.0
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 9.0e-62 240.7 176 67.0
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.2e-61 240.4 173 66.5
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 2.6e-61 239.2 166 68.7
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 3.4e-61 238.8 173 64.2
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 3.4e-61 238.8 173 65.9
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 5.9e-61 238.0 172 66.9
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 5.9e-61 238.0 169 69.8
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.0e-60 237.3 170 65.9
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.3e-60 236.9 177 65.5
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.7e-60 236.5 160 71.2
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.7e-60 236.5 170 69.4
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 1.7e-60 236.5 171 67.8
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 2.9e-60 235.7 168 66.7
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 3.8e-60 235.3 170 66.5
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.9e-59 233.0 174 66.1
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 7.2e-59 231.1 163 67.5
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 7.2e-59 231.1 173 67.6
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 9.4e-59 230.7 172 65.7
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.2e-58 230.3 167 65.9
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 4.6e-58 228.4 166 67.5
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.4e-57 226.9 165 66.1
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.9e-57 225.3 161 68.3
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 8.8e-57 224.2 167 65.3
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 1.9e-56 223.0 158 65.8
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 7.4e-56 221.1 162 67.3
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.7e-55 219.9 167 63.5
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 2.8e-55 219.2 157 66.2
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 6.3e-55 218.0 164 61.6
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.1e-54 217.2 131 75.6
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 3.1e-54 215.7 170 61.2
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 5.3e-54 214.9 172 64.0
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.3e-54 214.9 172 64.0
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.5e-53 213.4 165 65.5
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.4e-53 212.2 165 65.5
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 7.7e-53 211.1 162 63.0
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.9e-52 209.1 179 62.0
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 6.5e-52 208.0 131 73.3
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 8.5e-52 207.6 170 60.6
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.5e-51 206.1 179 58.7
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.2e-51 205.7 175 59.4
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 3.2e-51 205.7 182 57.7
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.6e-50 202.2 151 64.2
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 4.7e-50 201.8 159 59.1
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 6.1e-50 201.4 163 62.6
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 5.1e-49 198.4 159 61.0
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 9.7e-48 194.1 164 56.7
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.7e-47 193.4 166 60.8
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.8e-46 189.9 138 69.6
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 9.1e-46 187.6 135 69.6
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 5.9e-45 184.9 155 61.9
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 7.2e-43 177.9 157 52.2
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 9.4e-43 177.6 131 66.4
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.4e-41 173.7 129 65.9
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.0e-41 172.6 163 54.6
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 3.0e-41 172.6 159 59.1
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.9e-41 172.2 183 51.4
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.8e-39 166.0 174 52.3
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.8e-39 166.0 124 63.7
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.6e-37 160.2 166 51.8
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.5e-37 158.7 166 51.2
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.6e-34 149.1 116 66.4
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 1.8e-33 146.7 173 50.3
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 6.7e-33 144.8 97 71.1
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 9.7e-32 141.0 90 73.3
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.4e-30 136.3 148 44.6
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.9e-28 129.4 94 62.8
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 6.5e-28 128.3 89 70.8
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.3e-25 119.8 91 60.4
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 4.0e-25 119.0 72 73.6
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.9e-20 102.8 65 76.9
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.7e-18 95.5 79 58.2
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.2e-10 70.9 106 41.5
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 4.7e-10 68.9 73 52.1
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 6.1e-10 68.6 71 52.1
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 1.0e-09 67.8 173 31.2
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 1.7e-07 60.5 172 29.1
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 1.7e-07 60.5 32 84.4
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 1.9e-06 57.0 32 81.2
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 2.4e-06 56.6 64 39.1
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 4.1e-06 55.8 33 72.7
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 5.4e-06 55.5 32 78.1
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.2e-06 54.7 33 69.7


User provided reference genes

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