Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 2.7e-169 598.6 305 100.0
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 8.4e-163 577.0 305 96.1
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 4.2e-162 574.7 305 95.1
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 4.6e-161 571.2 305 94.4
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 3.0e-160 568.5 305 93.4
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 4.8e-158 561.2 305 90.2
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 2.4e-157 558.9 305 91.8
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 6.9e-157 557.4 305 88.9
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 1.5e-156 556.2 305 91.1
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 1.5e-156 556.2 305 90.8
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 1.5e-156 556.2 305 90.8
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 4.5e-156 554.7 305 90.8
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 4.5e-156 554.7 305 90.8
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 1.0e-152 543.5 305 85.9
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 6.7e-152 540.8 304 87.8
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 8.8e-152 540.4 305 84.9
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 8.8e-152 540.4 305 85.9
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 3.3e-151 538.5 305 88.2
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 4.3e-151 538.1 305 85.6
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 7.4e-151 537.3 305 86.6
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 1.7e-150 536.2 305 88.5
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 2.2e-150 535.8 305 83.3
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 3.7e-150 535.0 305 85.9
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 4.8e-150 534.6 305 87.5
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 4.8e-150 534.6 305 86.9
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.4e-149 533.1 305 86.6
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 83.6
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 84.6
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 2.4e-149 532.3 305 84.9
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.4e-149 532.3 305 84.3
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 4.1e-149 531.6 305 87.9
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 4.1e-149 531.6 305 87.2
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 4.1e-149 531.6 305 84.3
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 5.3e-149 531.2 305 84.6
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 5.3e-149 531.2 305 84.6
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 5.3e-149 531.2 305 84.3
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 6.9e-149 530.8 305 85.9
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 9.1e-149 530.4 305 83.9
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 85.6
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.5e-148 529.6 305 85.6
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 2.0e-148 529.3 305 84.3
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 2.0e-148 529.3 305 87.2
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 2.6e-148 528.9 305 82.6
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 3.4e-148 528.5 305 83.9
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 85.9
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 5.9e-148 527.7 305 83.3
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 5.9e-148 527.7 305 82.0
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 5.9e-148 527.7 305 85.2
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 84.3
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 1.0e-147 526.9 301 87.7
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 1.0e-147 526.9 305 84.9
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 1.7e-147 526.2 307 81.8
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 1.7e-147 526.2 305 83.9
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 83.9
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 3.8e-147 525.0 305 83.9
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 83.6
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 8.5e-147 523.9 305 81.6
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.4e-146 523.1 305 83.0
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 3.2e-146 521.9 305 83.0
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 85.2
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 84.9
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 81.0
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 83.0
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 1.6e-145 519.6 305 80.7
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 3.6e-145 518.5 301 86.0
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 6.1e-145 517.7 305 82.0
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.0e-144 516.9 305 83.9
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 1.8e-144 516.2 305 81.3
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 3.0e-144 515.4 305 82.3
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 3.9e-144 515.0 305 82.6
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 3.9e-144 515.0 305 83.3
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 1.1e-143 513.5 326 78.8
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 2.0e-143 512.7 300 84.3
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.6e-143 512.3 305 81.0
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 80.7
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 7.4e-143 510.8 305 80.3
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 7.4e-143 510.8 305 80.3
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 7.4e-143 510.8 302 83.8
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.2e-142 509.2 305 79.7
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 6.3e-142 507.7 303 82.5
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 7.0e-141 504.2 302 80.1
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 7.0e-141 504.2 307 82.1
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 1.0e-139 500.4 305 79.7
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 1.3e-139 500.0 308 78.6
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 8.5e-139 497.3 305 78.4
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.1e-138 496.9 330 74.2
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 4.2e-138 495.0 372 68.0
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 1.6e-137 493.0 303 77.6
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 2.1e-137 492.7 305 80.0
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 3.6e-137 491.9 305 80.0
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 6.1e-137 491.1 305 79.0
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.3e-136 489.2 304 78.6
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 2.6e-135 485.7 303 79.5
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 3.3e-135 485.3 305 76.1
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 3.7e-134 481.9 307 74.3
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 3.1e-133 478.8 307 73.6
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 4.1e-133 478.4 307 74.9
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 4.1e-133 478.4 307 73.9
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 1.6e-132 476.5 305 79.0
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 2.7e-132 475.7 307 74.6
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 3.5e-132 475.3 304 77.3
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 3.5e-132 475.3 304 77.3
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 7.7e-132 474.2 306 73.5
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 7.7e-132 474.2 306 73.5
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 7.7e-132 474.2 306 73.5
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 7.7e-132 474.2 388 65.2
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 1.0e-131 473.8 304 77.0
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 2.9e-131 472.2 306 73.5
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 5.0e-131 471.5 305 73.4
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 1.1e-130 470.3 304 76.6
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 2.6e-119 432.6 304 68.4
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.7e-118 429.9 300 70.3
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 5.4e-117 424.9 305 71.5
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 7.0e-117 424.5 306 67.3
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 3.5e-116 422.2 304 66.4
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 2.6e-111 406.0 246 82.5
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 2.9e-110 402.5 302 64.2
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 1.5e-106 390.2 235 82.6
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 3.6e-105 385.6 303 63.0
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 8.3e-102 374.4 225 80.0
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.4e-101 373.6 225 83.6
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 3.1e-96 355.9 311 57.2
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 5.8e-95 351.7 228 79.8
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 2.7e-92 342.8 206 80.1
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 1.9e-69 266.9 160 80.0
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 3.2e-69 266.2 181 72.9
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 4.0e-64 249.2 143 83.2
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 6.4e-62 241.9 149 75.8
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 2.7e-60 236.5 153 73.2
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 1.5e-58 230.7 154 70.8
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 8.2e-57 224.9 301 47.8
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 7.7e-39 165.2 136 56.6
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.2e-38 163.7 125 63.2
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 2.2e-38 163.7 299 34.8
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 5.0e-38 162.5 80 92.5
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 1.9e-37 160.6 83 90.4
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.1e-36 157.1 204 47.1
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.4e-35 154.5 79 88.6
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.8e-35 154.1 89 79.8
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 1.8e-35 154.1 80 85.0
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 3.3e-34 149.8 306 34.0
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 3.6e-28 129.8 79 78.5
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 4.8e-25 119.4 58 94.8
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 1.4e-24 117.9 76 73.7
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 8.5e-22 108.6 60 85.0
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 4.2e-21 106.3 64 78.1
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 3.6e-20 103.2 295 31.9
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.3e-17 94.7 69 81.2
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.1e-13 81.6 241 28.2


User provided reference genes

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