Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 4.9e-193 677.6 325 100.0
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 1.8e-187 659.1 325 96.3
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 1.0e-174 616.7 325 88.6
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 2.5e-173 612.1 325 89.5
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 3.6e-172 608.2 324 87.7
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 5.4e-168 594.3 323 87.0
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 1.0e-166 590.1 313 87.5
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 3.7e-164 581.6 327 84.1
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 1.1e-163 580.1 329 83.6
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 9.0e-163 577.0 322 84.5
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 3.2e-160 568.5 317 83.0
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 3.5e-159 565.1 323 80.5
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 4.6e-159 564.7 317 82.0
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 1.0e-158 563.5 319 81.2
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 1.0e-158 563.5 317 82.0
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 1.3e-158 563.1 324 81.2
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 5.1e-158 561.2 317 81.1
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 1.1e-157 560.1 329 79.0
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.3e-156 556.6 329 78.7
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.3e-156 556.6 320 81.6
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 1.6e-156 556.2 318 82.1
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 2.1e-156 555.8 317 80.1
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 2.1e-156 555.8 321 80.4
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 3.7e-156 555.1 329 78.7
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.7e-156 555.1 329 78.7
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 3.7e-156 555.1 325 81.2
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 6.2e-156 554.3 317 79.8
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.1e-155 553.5 329 78.4
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.8e-155 552.7 318 81.1
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 4.1e-155 551.6 326 79.4
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 5.3e-155 551.2 318 80.5
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 5.3e-155 551.2 330 79.1
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 6.9e-155 550.8 315 80.6
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 6.9e-155 550.8 324 79.6
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 9.0e-155 550.4 317 80.8
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 9.0e-155 550.4 327 79.2
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 1.2e-154 550.1 327 80.1
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 1.5e-154 549.7 326 78.8
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.5e-154 549.7 320 78.8
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.4e-154 548.5 329 77.8
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 3.4e-154 548.5 320 78.4
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 3.4e-154 548.5 317 79.8
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 4.5e-154 548.1 315 80.0
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 5.8e-154 547.7 328 77.7
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 5.8e-154 547.7 325 78.2
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 7.6e-154 547.4 320 78.8
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 7.6e-154 547.4 328 77.7
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 7.6e-154 547.4 317 80.4
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 7.6e-154 547.4 317 79.5
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 1.0e-153 547.0 316 80.4
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 1.3e-153 546.6 320 79.4
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.3e-153 546.6 318 79.2
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 1.3e-153 546.6 317 79.8
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 1.7e-153 546.2 323 77.7
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 2.2e-153 545.8 325 78.5
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 2.2e-153 545.8 325 78.8
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 5.0e-153 544.7 309 80.6
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 6.5e-153 544.3 318 79.9
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 6.5e-153 544.3 323 78.6
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 6.5e-153 544.3 325 77.8
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 6.5e-153 544.3 325 78.2
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 6.5e-153 544.3 317 79.8
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 6.5e-153 544.3 317 79.8
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 8.4e-153 543.9 309 81.2
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 1.1e-152 543.5 325 78.2
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 1.4e-152 543.1 321 79.4
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 3.2e-152 542.0 317 78.5
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 5.5e-152 541.2 321 77.9
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 5.5e-152 541.2 324 76.9
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 5.5e-152 541.2 326 77.3
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 7.2e-152 540.8 322 76.7
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 1.6e-151 539.7 325 76.0
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.6e-151 539.7 324 76.9
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 1.6e-151 539.7 320 77.8
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 2.1e-151 539.3 318 77.7
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 2.1e-151 539.3 317 79.5
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 2.7e-151 538.9 317 78.5
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 3.5e-151 538.5 309 80.6
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 4.6e-151 538.1 323 77.1
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 6.1e-151 537.7 319 78.4
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 7.9e-151 537.3 329 76.6
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 1.3e-150 536.6 317 78.5
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 1.8e-150 536.2 320 76.9
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 3.0e-150 535.4 329 76.3
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 3.0e-150 535.4 329 76.3
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 3.0e-150 535.4 318 78.0
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 6.7e-150 534.3 316 77.2
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 1.5e-149 533.1 317 78.2
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 1.9e-149 532.7 314 78.3
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 1.9e-149 532.7 318 76.7
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 1.9e-149 532.7 318 76.7
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 9.7e-149 530.4 321 76.3
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 1.3e-148 530.0 315 76.5
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 2.2e-148 529.3 329 75.4
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 2.2e-148 529.3 329 75.4
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 3.7e-148 528.5 312 78.8
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 1.1e-147 526.9 300 81.7
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 1.2e-146 523.5 322 76.4
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 2.0e-146 522.7 315 77.5
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 3.4e-146 521.9 317 76.3
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 1.0e-145 520.4 319 76.2
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 1.7e-145 519.6 383 66.8
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 3.8e-145 518.5 320 74.1
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 6.1e-143 511.1 337 72.1
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 4.2e-136 488.4 295 75.9
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.2e-135 486.9 307 73.9
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 1.6e-135 486.5 269 82.9
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 2.7e-135 485.7 306 73.9
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 1.4e-134 483.4 312 71.2
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 3.0e-134 482.3 304 73.4
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 9.7e-133 477.2 279 78.9
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 9.1e-131 470.7 323 68.1
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 3.8e-129 465.3 304 68.4
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 1.9e-128 463.0 317 68.5
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 1.8e-126 456.4 268 78.0
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 3.7e-124 448.7 305 67.2
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 3.7e-124 448.7 305 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 2.5e-120 436.0 309 65.0
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 1.2e-119 433.7 337 62.9
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 2.2e-116 422.9 250 76.4
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.5e-109 400.2 308 58.8
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 1.0e-105 387.5 233 79.4
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 1.5e-101 373.6 317 56.2
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 2.9e-92 342.8 253 66.0
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 6.4e-92 341.7 323 49.8
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 2.8e-87 326.2 210 69.5
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 1.3e-81 307.4 344 43.9
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 3.4e-69 266.2 361 39.6
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 7.4e-48 195.3 123 71.5
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 2.3e-25 120.6 89 66.3
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 6.7e-25 119.0 81 74.1
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.6e-21 107.1 78 67.9
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 7.2e-19 99.0 63 73.0
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 1.2e-10 71.6 51 62.7
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 2.1e-10 70.9 48 72.9
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 8.0e-10 68.9 51 66.7
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 3.3e-08 63.5 40 72.5


User provided reference genes

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