Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G235800 Glycine max HOM05D007447 ORTHO05D009372 3.3e-134 481.9 275 100.0
VMungo0540G1135 Vigna mungo HOM05D007447 ORTHO05D009372 1.9e-97 359.8 278 71.2
Phvul.006G182400 Phaseolus vulgaris HOM05D007447 ORTHO05D009372 5.6e-97 358.2 269 77.7
Lj6g0005430 Lotus japonicus HOM05D007447 ORTHO05D009372 9.2e-92 340.9 273 74.7
arahy.Tifrunner.gnm1.ann1.MUCA0D Arachis hypogaea HOM05D007447 ORTHO05D009372 2.1e-88 329.7 264 72.3
Psat1g202800 Pisum sativum HOM05D007447 ORTHO05D009372 1.4e-87 327.0 266 66.2
arahy.Tifrunner.gnm1.ann1.45S4HY Arachis hypogaea HOM05D007447 ORTHO05D009372 8.9e-87 324.3 264 71.6
Medtr2g014440 Medicago truncatula HOM05D007447 ORTHO05D009372 7.3e-81 304.7 275 64.4
Lalb_Chr18g0059391 Lupinus albus HOM05D007447 ORTHO05D009372 4.0e-79 298.9 270 62.2
Ca_00359_v3 Cicer arietinum L. HOM05D007447 ORTHO05D009372 2.6e-70 269.6 266 65.4
TPR.G11645 Trifolium pratense HOM05D007447 ORTHO05D009372 4.6e-67 258.8 274 59.9
QL05p042219 Quercus lobata HOM05D007447 ORTHO05D009372 5.8e-62 241.9 286 51.0
RcHm_v2.0_Chr5g0009131 Rosa chinensis HOM05D007447 ORTHO05D009372 2.9e-61 239.6 279 50.5
FAN16G2340 Fragaria x ananassa HOM05D007447 ORTHO05D009372 9.3e-60 234.6 245 51.8
GSVIVG01021110001 Vitis vinifera HOM05D007447 ORTHO05D009372 2.1e-59 233.4 244 52.0
Dinv40599 Davidia involucrata HOM05D007447 ORTHO05D009372 2.7e-59 233.0 289 49.5
PGR042G0911 Punica granatum HOM05D007447 ORTHO05D009372 3.5e-59 232.6 248 50.8
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 6.0e-59 231.9 282 48.6
Atru.chr10.1800 Acer truncatum HOM05D007447 ORTHO05D009372 1.3e-58 230.7 278 47.8
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 2.3e-58 229.9 258 51.2
FvH4_3g08660 Fragaria vesca HOM05D007447 ORTHO05D009372 1.1e-57 227.6 282 48.6
Thecc.06G181300 Theobroma cacao HOM05D007447 ORTHO05D009372 1.5e-57 227.3 282 48.9
Gorai.011G030100 Gossypium raimondii HOM05D007447 ORTHO05D009372 4.3e-57 225.7 266 47.7
MD10G1289400 Malus domestica HOM05D007447 ORTHO05D009372 1.3e-56 224.2 244 57.8
TAR627G0071 Trochodendron aralioides HOM05D007447 ORTHO05D009372 1.6e-56 223.8 290 47.2
Manes.16G031900 Manihot esculenta HOM05D007447 ORTHO05D009372 2.8e-56 223.0 280 47.9
Gohir.D10G028300 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.4e-55 220.7 266 47.4
CSS0015196 Camellia sinensis var. sinensis HOM05D007447 ORTHO05D009372 4.0e-55 219.2 260 45.8
FAN11G2802 Fragaria x ananassa HOM05D007447 ORTHO05D009372 6.9e-55 218.4 292 45.9
Sed0019225 Sechium edule HOM05D007447 ORTHO05D009372 4.5e-54 215.7 258 45.7
Ciclev10018161m.g Citrus clementina HOM05D007447 ORTHO05D009372 1.4e-52 210.7 210 52.9
ClCG03G008020 Citrullus lanatus HOM05D007447 ORTHO05D009372 2.4e-52 209.9 276 43.8
Eucgr.E03244 Eucalyptus grandis HOM05D007447 ORTHO05D009372 3.2e-52 209.5 285 44.9
TWI63G0216 Tripterygium wilfordii HOM05D007447 ORTHO05D009372 1.5e-49 200.7 279 43.4
CsaV3_1G012550 Cucumis sativus L. HOM05D007447 ORTHO05D009372 5.6e-49 198.7 244 44.7
Cfa000525 Carpinus fangiana HOM05D007447 ORTHO05D009372 1.3e-48 197.6 276 44.9
CiPaw.10G052600 Carya illinoinensis HOM05D007447 ORTHO05D009372 3.7e-48 196.1 232 47.4
PSO675G5366 Papaver somniferum HOM05D007447 ORTHO05D009372 8.1e-48 194.9 249 45.8
PSO675G8572 Papaver somniferum HOM05D007447 ORTHO05D009372 8.1e-48 194.9 249 45.8
Aqoxy1G02279 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 2.4e-47 193.4 283 40.3
Gohir.A05G159100 Gossypium hirsutum HOM05D007447 ORTHO05D009372 2.9e-45 186.4 246 44.7
Nn1g06424 Nelumbo nucifera HOM05D007447 ORTHO05D009372 2.9e-45 186.4 265 45.3
CANSAT35G0297 Cannabis sativa HOM05D007447 ORTHO05D009372 3.8e-45 186.0 249 46.2
Cpa.g.sc27.6 Carica papaya HOM05D007447 ORTHO05D009372 4.9e-45 185.7 265 43.8
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 6.5e-45 185.3 280 41.8
MSTRG.14713 Avicennia marina HOM05D007447 ORTHO05D009372 3.2e-44 183.0 257 42.8
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 2.1e-43 180.3 270 43.0
Nitab4.5_0001955g0160 Nicotiana tabacum HOM05D007447 ORTHO05D009372 8.7e-42 174.9 276 40.2
Aqoxy193s001 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 4.3e-41 172.6 192 47.4
Hma1.2p1_0558F.1_g178510 Hydrangea macrophylla HOM05D007447 ORTHO05D009372 7.4e-41 171.8 175 53.7
Thhalv10008438m.g Eutrema salsugineum HOM05D007447 ORTHO05D009372 3.7e-40 169.5 288 39.2
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 2.4e-39 166.8 238 44.1
DCAR_008005 Daucus carota HOM05D007447 ORTHO05D009372 2.0e-38 163.7 214 46.7
Solyc02g077690.4 Solanum lycopersicum HOM05D007447 ORTHO05D009372 1.7e-37 160.6 276 38.8
CAN.G529.53 Capsicum annuum HOM05D007447 ORTHO05D009372 2.2e-37 160.2 189 47.6
AL1G42040 Arabidopsis lyrata HOM05D007447 ORTHO05D009372 2.9e-37 159.8 285 38.6
Duzib160G0617 Durio zibethinus HOM05D007447 ORTHO05D009372 5.0e-37 159.1 281 39.9
AT1G28410 Arabidopsis thaliana HOM05D007447 ORTHO05D009372 8.4e-37 158.3 282 38.7
Carub.0001s2689 Capsella rubella HOM05D007447 ORTHO05D009372 8.4e-37 158.3 280 37.5
ECA248G3772 Erigeron canadensis HOM05D007447 ORTHO05D009372 8.4e-37 158.3 272 39.0
unitig_61.g26088 Utricularia gibba HOM05D007447 ORTHO05D009372 8.4e-37 158.3 282 36.9
Migut.H01471 Erythranthe guttata HOM05D007447 ORTHO05D009372 1.4e-36 157.5 250 40.8
HanXRQChr08g0213981 Helianthus annuus HOM05D007447 ORTHO05D009372 2.7e-35 153.3 241 43.6
CARHR027920 Cardamine hirsuta HOM05D007447 ORTHO05D009372 7.9e-35 151.8 284 37.0
Actinidia07600 Actinidia chinensis HOM05D007447 ORTHO05D009372 1.8e-34 150.6 197 42.1
Sp1g24690 Schrenkiella parvula HOM05D007447 ORTHO05D009372 8.7e-34 148.3 264 37.9
THA.LOC104814436 Tarenaya hassleriana HOM05D007447 ORTHO05D009372 1.5e-33 147.5 276 37.0
vmacro15930 Vaccinium macrocarpon HOM05D007447 ORTHO05D009372 1.9e-33 147.1 288 33.7
BraA09t39273Z Brassica rapa HOM05D007447 ORTHO05D009372 3.3e-33 146.4 232 39.7
Hund23805 Selenicereus undatus HOM05D007447 ORTHO05D009372 4.3e-33 146.0 244 40.2
A09p37630 Brassica napus HOM05D007447 ORTHO05D009372 5.7e-33 145.6 202 43.1
C05p27420 Brassica napus HOM05D007447 ORTHO05D009372 9.7e-33 144.8 232 38.8
BolC5t31458H Brassica oleracea HOM05D007447 ORTHO05D009372 1.3e-32 144.4 206 41.3
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 3.7e-32 142.9 266 36.8
BcaC05g26860 Brassica carinata HOM05D007447 ORTHO05D009372 1.7e-29 134.0 250 36.4
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 6.5e-29 132.1 247 38.1
EL10Ac8g20436 Beta vulgaris HOM05D007447 ORTHO05D009372 2.5e-28 130.2 242 33.9
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 3.2e-28 129.8 257 35.0
Ah.09g237570 Amaranthus hybridus HOM05D007447 ORTHO05D009372 5.5e-28 129.0 242 36.8
AUR62014866 Chenopodium quinoa HOM05D007447 ORTHO05D009372 1.6e-27 127.5 242 36.4
Oeu012152.1 Olea europaea HOM05D007447 ORTHO05D009372 6.1e-27 125.6 192 39.6
Gohir.A09G104400 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.0e-26 123.2 204 36.8
Sopen02g022590 Solanum pennellii HOM05D007447 ORTHO05D009372 2.0e-25 120.6 276 34.1
Gohir.A10G027900 Gossypium hirsutum HOM05D007447 ORTHO05D009372 1.7e-24 117.5 171 39.8
MELO3C000075.2 Cucumis melo HOM05D007447 ORTHO05D009372 2.8e-24 116.7 129 46.5
Cc02_g13820 Coffea canephora HOM05D007447 ORTHO05D009372 4.8e-24 115.9 206 34.5
Peaxi162Scf00926g00028 Petunia axillaris HOM05D007447 ORTHO05D009372 8.2e-24 115.2 279 34.4
SalBow7G4252 Salvia bowleyana HOM05D007447 ORTHO05D009372 1.7e-21 107.5 202 36.1
SalBow7G4859 Salvia bowleyana HOM05D007447 ORTHO05D009372 1.7e-21 107.5 202 36.1
Lsat_1_v5_gn_1_120761 Lactuca sativa HOM05D007447 ORTHO05D009372 3.2e-20 103.2 111 52.3
Rhsim02G0134600 Rhododendron simsii HOM05D007447 ORTHO05D009372 2.1e-19 100.5 149 41.6
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 1.0e-18 98.2 128 41.4
Potri.004G048500 Populus trichocarpa HOM05D007447 ORTHO05D009372 1.8e-18 97.4 112 50.0
Os02g0305600 Oryza sativa ssp. japonica HOM05D007447 ORTHO05D009372 2.3e-18 97.1 330 26.7
MBI06_g04396_MAGBIO Magnolia biondii HOM05D007447 ORTHO05D009372 3.3e-17 93.2 280 29.6
Zm00001eb203200 Zea mays HOM05D007447 ORTHO05D009372 1.4e-15 87.8 301 25.9
ATR0730G049 Amborella trichopoda HOM05D007447 ORTHO05D009372 7.0e-15 85.5 210 30.5
MELO3C027350.2 Cucumis melo HOM05D007447 ORTHO05D009372 3.5e-14 83.2 93 45.2
HPP92_005282 Vanilla planifolia HOM05D007447 ORTHO05D009372 1.9e-12 77.4 143 36.4
AUR62031072 Chenopodium quinoa HOM05D007447 ORTHO05D009372 1.2e-11 74.7 229 29.3
Gohir.A01G124600 Gossypium hirsutum HOM05D007447 ORTHO05D009372 6.1e-11 72.4 71 47.9
Gohir.A01G131222 Gossypium hirsutum HOM05D007447 ORTHO05D009372 6.1e-11 72.4 71 47.9
Gohir.A02G158500 Gossypium hirsutum HOM05D007447 ORTHO05D009372 6.1e-11 72.4 70 48.6
SEGI_19030 Sequoiadendron giganteum HOM05D002665 ORTHO05D002991 4.5e-06 56.2 64 40.6
Lsat_1_v5_gn_7_55401 Lactuca sativa HOM05D002665 ORTHO05D002991 5.9e-06 55.8 58 46.6


User provided reference genes

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