Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 2.3e-176 622.1 310 100.0
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 8.6e-163 577.0 310 93.2
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 2.2e-158 562.4 313 91.1
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 4.1e-157 558.1 313 90.4
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 3.5e-148 528.5 313 84.0
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 9.5e-146 520.4 313 82.4
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 1.2e-145 520.0 312 82.7
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 8.1e-145 517.3 311 83.9
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 1.1e-144 516.9 313 83.1
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 1.8e-144 516.2 313 83.4
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 5.2e-144 514.6 312 81.7
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 2.6e-143 512.3 313 83.1
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 7.6e-143 510.8 309 82.5
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 7.8e-140 500.7 310 81.9
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.0e-139 500.4 309 81.6
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 5.1e-139 498.0 314 80.9
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 2.8e-137 492.3 310 81.0
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 1.1e-133 480.3 310 77.7
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 1.9e-133 479.6 314 76.8
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 7.1e-133 477.6 312 78.5
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 9.3e-133 477.2 311 77.5
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.2e-132 476.9 315 79.0
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.2e-132 476.9 315 79.0
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 2.1e-132 476.1 318 77.7
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 4.6e-132 474.9 311 78.1
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 2.3e-131 472.6 309 77.0
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 3.0e-131 472.2 310 78.7
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 3.9e-131 471.9 316 77.5
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 3.9e-131 471.9 314 75.8
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 5.1e-131 471.5 309 78.3
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 1.1e-130 470.3 310 78.1
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 1.5e-130 469.9 315 77.1
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 1.5e-130 469.9 314 76.1
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 5.6e-130 468.0 314 77.1
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 5.6e-130 468.0 314 76.8
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.3e-130 467.6 307 77.5
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 9.6e-130 467.2 307 77.5
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 1.3e-129 466.8 310 75.5
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 1.3e-129 466.8 313 76.7
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 1.6e-129 466.5 313 76.0
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 1.6e-129 466.5 311 76.5
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 2.1e-129 466.1 313 76.4
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 2.1e-129 466.1 313 75.4
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 2.1e-129 466.1 307 78.5
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 2.1e-129 466.1 312 77.2
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 4.8e-129 464.9 314 76.8
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 4.8e-129 464.9 311 76.5
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 6.2e-129 464.5 311 75.9
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 6.2e-129 464.5 310 75.2
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 6.2e-129 464.5 312 76.3
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 8.1e-129 464.2 311 77.8
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 1.1e-128 463.8 313 75.1
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 1.4e-128 463.4 313 75.1
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 2.4e-128 462.6 322 73.3
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.1e-128 462.2 308 76.9
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 4.0e-128 461.8 313 76.4
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 4.0e-128 461.8 313 75.4
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.3e-128 461.5 312 75.3
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 6.9e-128 461.1 315 75.2
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 9.0e-128 460.7 316 74.4
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 1.2e-127 460.3 319 73.0
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 2.0e-127 459.5 311 77.2
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 2.6e-127 459.1 308 73.7
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 2.6e-127 459.1 311 74.9
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 4.5e-127 458.4 310 76.1
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 7.6e-127 457.6 311 75.6
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 9.9e-127 457.2 332 73.2
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 1.3e-126 456.8 314 76.1
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 1.3e-126 456.8 315 75.9
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 1.7e-126 456.4 319 72.4
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 6.4e-126 454.5 308 75.6
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 8.4e-126 454.1 321 72.6
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 8.4e-126 454.1 314 73.9
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 8.4e-126 454.1 315 74.6
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 1.1e-125 453.8 319 72.1
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 1.1e-125 453.8 315 72.1
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.4e-125 453.4 315 73.0
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 1.9e-125 453.0 314 74.8
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 2.4e-125 452.6 309 74.8
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 3.2e-125 452.2 322 71.4
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 4.2e-125 451.8 321 70.7
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 5.4e-125 451.4 308 75.0
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 7.1e-125 451.1 315 74.3
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 9.3e-125 450.7 321 70.7
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 1.2e-124 450.3 309 74.1
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 3.5e-124 448.7 319 70.2
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 3.5e-124 448.7 313 72.8
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 1.3e-123 446.8 317 72.2
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 8.7e-123 444.1 329 69.0
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 2.5e-122 442.6 309 72.8
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 7.4e-122 441.0 311 73.0
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 2.8e-121 439.1 308 73.7
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 1.1e-120 437.2 308 72.7
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 9.0e-120 434.1 317 69.7
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 2.2e-118 429.5 309 71.8
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 3.8e-118 428.7 274 78.5
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 3.8e-118 428.7 331 68.3
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 4.9e-118 428.3 284 76.8
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 4.9e-118 428.3 311 70.7
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 6.4e-118 427.9 302 73.2
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.2e-116 423.7 293 75.4
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 6.0e-116 421.4 335 68.7
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 6.0e-116 421.4 312 71.2
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 5.1e-115 418.3 285 75.8
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 1.5e-114 416.8 321 66.0
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 5.6e-114 414.8 268 78.4
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 4.8e-113 411.8 322 65.8
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 5.3e-112 408.3 323 64.1
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 2.7e-108 396.0 308 65.6
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 3.7e-105 385.6 266 74.1
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 8.2e-105 384.4 312 65.4
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 1.2e-103 380.6 220 84.5
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 5.0e-102 375.2 231 77.9
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 1.6e-100 370.2 227 77.5
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 4.6e-100 368.6 334 57.5
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 6.1e-100 368.2 301 64.8
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 6.1e-100 368.2 301 64.5
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 6.7e-99 364.8 332 59.9
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 1.9e-98 363.2 311 60.1
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 5.3e-96 355.1 313 62.6
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 2.9e-94 349.4 314 64.3
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 6.3e-89 331.6 226 74.3
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 8.2e-89 331.3 204 80.9
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.5e-82 310.5 238 65.5
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 2.2e-78 296.6 320 54.4
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 2.5e-77 293.1 260 58.8
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 5.7e-74 282.0 208 71.2
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 2.8e-73 279.6 315 50.5
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 4.8e-73 278.9 162 85.2
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 1.8e-67 260.4 157 82.2
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 1.3e-65 254.2 171 76.0
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 3.7e-65 252.7 346 43.6
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 2.4e-64 250.0 150 80.0
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 2.2e-57 226.9 171 69.6
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.0e-56 221.9 134 79.9
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 4.7e-52 209.1 293 42.3
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 2.6e-50 203.4 166 64.5
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 1.4e-48 197.6 131 77.1
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.0e-48 195.3 112 83.9
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 2.7e-47 193.4 238 48.7
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.0e-46 189.1 116 78.4
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.5e-45 186.8 121 73.6
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.5e-45 186.8 116 77.6
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.3e-45 186.4 121 73.6
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.3e-45 186.4 121 73.6
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-44 184.5 121 72.7
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.6e-44 183.0 113 77.9
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.6e-44 183.0 118 74.6
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.0e-44 181.8 113 77.9
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.9e-43 178.3 113 75.2
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.7e-39 166.8 294 39.1
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.3e-38 163.7 93 84.9
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.5e-37 158.3 156 56.4
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 4.7e-36 156.0 97 76.3
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 8.1e-36 155.2 97 76.3
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 8.6e-30 135.2 89 73.0
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.3e-29 133.3 84 75.0
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 6.8e-27 125.6 135 51.9
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 1.7e-25 120.9 95 61.1
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 1.7e-25 120.9 95 61.1
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.3e-21 105.5 64 82.8
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.6e-20 104.4 64 82.8
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 3.6e-20 103.2 74 74.3
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.8e-17 93.2 95 58.9
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 2.4e-16 90.5 65 72.3
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 4.2e-16 89.7 71 67.6
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 9.3e-16 88.6 50 82.0
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 9.3e-16 88.6 94 57.4
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 9.3e-16 88.6 50 82.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.2e-15 88.2 47 83.0
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.1e-15 87.4 95 57.9
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.7e-15 87.0 50 80.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 2.7e-15 87.0 50 80.0
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 2.7e-15 87.0 62 67.7
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 3.0e-14 83.6 105 48.6
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 6.6e-14 82.4 230 29.1
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 4.0e-11 73.2 84 53.6
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 1.2e-07 61.6 107 40.2
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 7.9e-07 58.9 152 34.9


User provided reference genes

Program Settings