Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G233500 Glycine max HOM05D007006 ORTHO05D008925 1.5e-105 386.3 213 100.0
Glyma.15G079600 Glycine max HOM05D007006 ORTHO05D008925 4.8e-88 328.2 202 87.1
Phvul.006G179400 Phaseolus vulgaris HOM05D007006 ORTHO05D008925 6.9e-79 297.7 196 79.1
VMungo0540G0068 Vigna mungo HOM05D007006 ORTHO05D008925 3.8e-77 292.0 195 77.9
TPR.G31857 Trifolium pratense HOM05D007006 ORTHO05D008925 1.1e-76 290.4 152 94.1
arahy.Tifrunner.gnm1.ann1.PE4VQR Arachis hypogaea HOM05D000109 ORTHO05D000965 1.8e-74 283.1 151 92.1
Ca_11669_v3 Cicer arietinum L. HOM05D007006 ORTHO05D008925 1.1e-73 280.4 150 94.7
Lj6g0023400 Lotus japonicus HOM05D007006 ORTHO05D008925 1.1e-73 280.4 195 82.1
Psat1g148320 Pisum sativum HOM05D007006 ORTHO05D008925 1.5e-73 280.0 154 92.9
CiPaw.10G055000 Carya illinoinensis HOM05D007006 ORTHO05D008925 3.4e-70 268.9 152 85.5
Haze_06320 Corylus avellana HOM05D007006 ORTHO05D008925 5.9e-70 268.1 152 85.5
GSVIVG01021151001 Vitis vinifera HOM05D007006 ORTHO05D008925 1.3e-69 266.9 152 84.2
Medtr2g036040 Medicago truncatula HOM05D007006 ORTHO05D008925 2.9e-69 265.8 161 88.2
MD10G1285600 Malus domestica HOM05D007006 ORTHO05D008925 6.5e-69 264.6 152 82.9
COL.COLO4_31384 Corchorus olitorius HOM05D007006 ORTHO05D008976 1.1e-68 263.8 154 83.1
Duzib160G0118 Durio zibethinus HOM05D007006 ORTHO05D008925 1.4e-68 263.5 158 80.4
Gohir.D10G029800 Gossypium hirsutum HOM05D007006 ORTHO05D008925 1.9e-68 263.1 158 81.6
Gorai.011G031700 Gossypium raimondii HOM05D007006 ORTHO05D008925 1.9e-68 263.1 158 81.6
TAR626G0127 Trochodendron aralioides HOM05D007006 ORTHO05D008925 1.9e-68 263.1 152 84.2
Thecc.06G177200 Theobroma cacao HOM05D007006 ORTHO05D008925 3.2e-68 262.3 162 80.9
Prupe.4G056000 Prunus persica HOM05D007006 ORTHO05D008925 5.5e-68 261.5 152 82.2
Gohir.A10G029300 Gossypium hirsutum HOM05D007006 ORTHO05D008925 7.2e-68 261.2 158 81.0
Atru.chr10.1745 Acer truncatum HOM05D007006 ORTHO05D008925 1.6e-67 260.0 150 84.0
Dinv17375 Davidia involucrata HOM05D007006 ORTHO05D008925 1.6e-67 260.0 155 81.9
CsaV3_1G012640 Cucumis sativus L. HOM05D007006 ORTHO05D008925 2.1e-67 259.6 149 83.9
Sed0005765 Sechium edule HOM05D007006 ORTHO05D008925 2.7e-67 259.2 151 82.1
Actinidia07621 Actinidia chinensis HOM05D007006 ORTHO05D008925 3.6e-67 258.8 152 80.3
Nn1g04307 Nelumbo nucifera HOM05D007006 ORTHO05D008925 4.6e-67 258.5 149 81.9
CSS0027125 Camellia sinensis var. sinensis HOM05D007006 ORTHO05D008925 6.1e-67 258.1 152 80.3
Eucgr.E03165 Eucalyptus grandis HOM05D007006 ORTHO05D008925 7.9e-67 257.7 149 83.9
Nitab4.5_0000376g0100 Nicotiana tabacum HOM05D007006 ORTHO05D008925 7.9e-67 257.7 152 79.6
Sopen02g022230 Solanum pennellii HOM05D007006 ORTHO05D008925 7.9e-67 257.7 152 80.9
PGSC0003DMG400010717 Solanum tuberosum HOM05D007006 ORTHO05D008925 7.9e-67 257.7 152 80.9
Solyc02g077310.4 Solanum lycopersicum HOM05D007006 ORTHO05D008925 1.0e-66 257.3 152 80.9
Manes.16G034601 Manihot esculenta HOM05D007006 ORTHO05D008925 2.3e-66 256.1 149 83.2
THA.LOC104798412 Tarenaya hassleriana HOM05D007006 ORTHO05D008925 2.3e-66 256.1 149 81.2
CANSAT35G1771 Cannabis sativa HOM05D007006 ORTHO05D008925 3.9e-66 255.4 158 78.5
Thhalv10026439m.g Eutrema salsugineum HOM05D007006 ORTHO05D008925 6.7e-66 254.6 152 78.9
ATR0602G073 Amborella trichopoda HOM05D007006 ORTHO05D008925 8.8e-66 254.2 152 81.6
CARHR225300 Cardamine hirsuta HOM05D007006 ORTHO05D008925 1.1e-65 253.8 155 77.4
PSO210G2152 Papaver somniferum HOM05D007006 ORTHO05D008925 1.1e-65 253.8 149 81.9
Carub.0007s2277 Capsella rubella HOM05D007006 ORTHO05D008925 3.3e-65 252.3 149 79.9
AT4G18460 Arabidopsis thaliana HOM05D007006 ORTHO05D008925 5.7e-65 251.5 148 80.4
Nitab4.5_0011727g0040 Nicotiana tabacum HOM05D007006 ORTHO05D008925 5.7e-65 251.5 160 76.2
Rhsim02G0152900 Rhododendron simsii HOM05D007006 ORTHO05D008925 5.7e-65 251.5 156 79.5
TWI63G0680 Tripterygium wilfordii HOM05D007006 ORTHO05D008925 5.7e-65 251.5 150 80.7
Potri.011G062200 Populus trichocarpa HOM05D007006 ORTHO05D008925 9.7e-65 250.8 150 80.0
Hma1.2p1_0155F.1_g068540 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 1.7e-64 250.0 149 79.9
AL7G35820 Arabidopsis lyrata HOM05D007006 ORTHO05D008925 2.2e-64 249.6 148 79.1
CAN.G79.66 Capsicum annuum HOM05D007006 ORTHO05D008925 2.2e-64 249.6 152 76.3
FAN21G1832 Fragaria x ananassa HOM05D007006 ORTHO05D008925 2.2e-64 249.6 151 80.1
RcHm_v2.0_Chr5g0009821 Rosa chinensis HOM05D007006 ORTHO05D008925 2.2e-64 249.6 151 80.1
Zm00001eb122370 Zea mays HOM05D007006 ORTHO05D008925 2.2e-64 249.6 150 78.7
BraA01t00989Z Brassica rapa HOM05D007006 ORTHO05D008925 3.7e-64 248.8 149 78.5
Migut.M01077 Erythranthe guttata HOM05D007006 ORTHO05D008925 4.8e-64 248.4 149 79.9
Os01g0242500 Oryza sativa ssp. japonica HOM05D007006 ORTHO05D008925 8.2e-64 247.7 150 77.3
SEGI_08558 Sequoiadendron giganteum HOM05D007006 ORTHO05D008925 1.4e-63 246.9 150 79.3
Aa31LG6G1200 Aethionema arabicum HOM05D007006 ORTHO05D008925 1.8e-63 246.5 155 74.8
BcaC09g51505 Brassica carinata HOM05D007006 ORTHO05D008925 1.8e-63 246.5 150 78.0
BolC1t01215H Brassica oleracea HOM05D007006 ORTHO05D008925 1.8e-63 246.5 150 78.0
Oeu001091.1 Olea europaea HOM05D007006 ORTHO05D008925 1.8e-63 246.5 149 78.5
Sp7g15560 Schrenkiella parvula HOM05D007006 ORTHO05D008925 1.8e-63 246.5 154 76.6
SalBow8G1160 Salvia bowleyana HOM05D007006 ORTHO05D008925 3.1e-63 245.7 149 78.5
MSTRG.7381 Avicennia marina HOM05D007006 ORTHO05D008925 5.3e-63 245.0 152 77.0
ECA248G3223 Erigeron canadensis HOM05D007006 ORTHO05D008925 2.0e-62 243.0 148 79.1
Sabra11G0042600 Salix brachista HOM05D007006 ORTHO05D008925 2.0e-62 243.0 163 74.2
Sabra11G0044100 Salix brachista HOM05D007006 ORTHO05D008925 2.0e-62 243.0 163 74.2
MELO3C002631.2 Cucumis melo HOM05D007006 ORTHO05D008925 7.7e-62 241.1 151 78.8
Sc05g0007280 Simmondsia chinensis HOM05D007006 ORTHO05D008925 7.7e-62 241.1 156 77.6
HanXRQChr01g0008471 Helianthus annuus HOM05D007006 ORTHO05D008925 1.0e-61 240.7 148 78.4
CDE02G4743 Ceratophyllum demersum HOM05D007006 ORTHO05D008925 1.7e-61 240.0 149 77.9
HPP92_002943 Vanilla planifolia HOM05D007006 ORTHO05D008925 6.5e-61 238.0 148 77.7
BcaNung05874 Brassica carinata HOM05D007006 ORTHO05D008925 1.1e-60 237.3 149 75.8
FvH4_3g08260 Fragaria vesca HOM05D007006 ORTHO05D008925 1.3e-56 223.8 135 80.0
Lj1A1197T80 Lonicera japonica HOM05D007006 ORTHO05D008925 1.7e-56 223.4 154 72.7
FAN11G3635 Fragaria x ananassa HOM05D007006 ORTHO05D008925 2.8e-56 222.6 135 79.3
FAN16G3644 Fragaria x ananassa HOM05D007006 ORTHO05D008925 2.8e-56 222.6 135 79.3
Cc02_g14310 Coffea canephora HOM05D007006 ORTHO05D008925 3.7e-56 222.2 138 76.8
SMO356G0615 Selaginella moellendorffii HOM05D007006 ORTHO05D008925 4.8e-56 221.9 151 68.2
SGA_v2.0_scaffold309G48130 Striga asiatica HOM05D007006 ORTHO05D008925 8.2e-56 221.1 149 73.2
Hund21193 Selenicereus undatus HOM05D007006 ORTHO05D008925 1.1e-55 220.7 135 82.2
Mapoly0096s0066 Marchantia polymorpha HOM05D007006 ORTHO05D008925 2.4e-55 219.5 148 70.9
CBR_g12914 Chara braunii HOM05D007006 ORTHO05D008925 5.3e-55 218.4 148 69.6
Cpa.g.sc7.31 Carica papaya HOM05D007006 ORTHO05D008925 1.6e-54 216.9 130 79.2
ClCG03G007950 Citrullus lanatus HOM05D007006 ORTHO05D008925 5.9e-54 214.9 203 58.1
Ciclev10016962m.g Citrus clementina HOM05D007006 ORTHO05D008925 5.9e-54 214.9 124 83.1
Eucgr.E02654 Eucalyptus grandis HOM05D007006 ORTHO05D008925 7.7e-54 214.5 145 73.8
Pp3c2_4790 Physcomitrium patens HOM05D007006 ORTHO05D008925 2.9e-53 212.6 134 75.4
A01p10430 Brassica napus HOM05D007006 ORTHO05D008925 8.5e-53 211.1 150 69.3
CBR_g28086 Chara braunii HOM05D007006 ORTHO05D008925 1.1e-52 210.7 148 67.6
SGA_v2.0_scaffold309G48148 Striga asiatica HOM05D007006 ORTHO05D008925 2.5e-52 209.5 168 64.9
C01p12410 Brassica napus HOM05D007006 ORTHO05D008925 9.4e-52 207.6 151 68.9
Hma1.2p1_0155F.1_g068550 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 1.4e-50 203.8 151 68.2
Cfa000555 Carpinus fangiana HOM05D007006 ORTHO05D008925 2.2e-48 196.4 177 63.3
EL10Ac8g20473 Beta vulgaris HOM05D007006 ORTHO05D008925 2.5e-44 183.0 152 63.2
AUR62031124 Chenopodium quinoa HOM05D007006 ORTHO05D008925 1.0e-42 177.6 152 61.8
Lsat_1_v5_gn_1_120360 Lactuca sativa HOM05D007006 ORTHO05D008925 1.8e-42 176.8 116 72.4
Peaxi162Scf00875g00318 Petunia axillaris HOM05D007006 ORTHO05D008925 2.8e-40 169.5 107 71.0
DCAR_004029 Daucus carota HOM05D007006 ORTHO05D008925 8.3e-40 167.9 98 75.5
AUR62014917 Chenopodium quinoa HOM05D007006 ORTHO05D008925 3.1e-39 166.0 148 60.1
Cre12.g542000 Chlamydomonas reinhardtii HOM05D007006 ORTHO05D008925 7.0e-39 164.9 153 54.2
RcHm_v2.0_Chr5g0007981 Rosa chinensis HOM05D007006 ORTHO05D008925 5.9e-38 161.8 124 67.7
MCO06G160 Micromonas commoda HOM05D007006 ORTHO05D008925 6.5e-37 158.3 162 53.1
Lalb_Chr20g0121401 Lupinus albus HOM05D007006 ORTHO05D008925 3.0e-34 149.4 79 83.5
PSO832G1055 Papaver somniferum HOM05D007006 ORTHO05D008925 5.7e-33 145.2 81 84.0
MBI06_g25712_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 2.2e-32 143.3 82 81.7
PGR042G2307 Punica granatum HOM05D007006 ORTHO05D008925 1.4e-31 140.6 83 80.7
Haze_27122 Corylus avellana HOM05D007006 ORTHO05D008925 1.2e-30 137.5 148 43.9
PRCOL_00003508 Prasinoderma coloniale HOM05D007006 ORTHO05D008925 4.5e-30 135.6 151 49.0
CBR_g41520 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-21 107.5 72 68.1
SGA_v2.0_scaffold309G48132 Striga asiatica HOM05D007006 ORTHO05D008925 1.4e-15 87.4 125 44.0
Actinidia39491 Actinidia chinensis HOM05D007006 ORTHO05D008925 7.0e-15 85.1 79 60.8
MBI06_g25714_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 3.2e-07 59.7 37 75.7


User provided reference genes

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