Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 2.4e-70 268.9 147 100.0
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 3.0e-65 251.9 147 94.6
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 3.2e-59 231.9 148 86.5
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 3.2e-59 231.9 148 86.5
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 3.7e-39 165.2 151 69.5
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 6.3e-39 164.5 145 67.6
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 6.3e-39 164.5 135 71.9
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 1.4e-38 163.3 145 66.9
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.4e-38 163.3 145 66.9
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 5.3e-38 161.4 145 66.9
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 2.0e-37 159.5 151 64.2
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 2.0e-37 159.5 154 66.9
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 7.7e-37 157.5 148 64.9
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 5.0e-36 154.8 136 67.6
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 1.5e-35 153.3 131 71.0
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 3.2e-35 152.1 143 67.8
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 4.2e-35 151.8 139 66.9
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 4.2e-35 151.8 144 63.9
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 5.5e-35 151.4 151 68.2
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 5.5e-35 151.4 141 68.1
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 1.2e-34 150.2 139 66.9
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 2.1e-34 149.4 139 68.3
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 4.7e-34 148.3 133 66.9
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 8.0e-34 147.5 133 69.9
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 1.0e-33 147.1 153 66.0
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 1.8e-33 146.4 144 63.2
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 1.8e-33 146.4 151 62.9
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 1.2e-32 143.7 132 67.4
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 1.5e-32 143.3 146 57.5
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 2.0e-32 142.9 153 67.3
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.0e-32 142.9 138 63.0
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 2.0e-32 142.9 140 64.3
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 3.3e-32 142.1 140 63.6
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 4.4e-32 141.7 160 60.0
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 4.4e-32 141.7 136 65.4
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 4.4e-32 141.7 134 67.9
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 9.7e-32 140.6 103 75.7
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 1.3e-31 140.2 146 56.2
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 2.2e-31 139.4 136 61.0
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.2e-31 139.4 140 63.6
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 2.8e-31 139.0 138 63.0
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 3.7e-31 138.7 138 63.0
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 1.4e-30 136.7 153 61.4
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 1.4e-30 136.7 153 61.4
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 1.8e-30 136.3 153 59.5
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 1.8e-30 136.3 133 64.7
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 7.0e-30 134.4 143 59.4
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 1.2e-29 133.7 146 59.6
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 1.6e-29 133.3 139 62.6
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 2.7e-29 132.5 140 62.1
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 1.0e-28 130.6 144 61.1
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 1.3e-28 130.2 154 57.1
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 1.3e-28 130.2 170 53.5
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 1.7e-28 129.8 148 55.4
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 1.7e-28 129.8 145 58.6
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 1.7e-28 129.8 142 59.2
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 2.9e-28 129.0 139 66.9
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 3.8e-28 128.6 151 59.6
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 6.5e-28 127.9 124 64.5
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 8.5e-28 127.5 135 59.3
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 1.1e-27 127.1 133 63.2
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 1.5e-27 126.7 134 58.2
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 1.5e-27 126.7 141 57.4
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 1.9e-27 126.3 132 63.6
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 1.9e-27 126.3 152 57.9
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 1.9e-27 126.3 152 57.9
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 2.5e-27 125.9 134 63.4
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 1.2e-26 123.6 147 57.8
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 1.6e-26 123.2 153 57.5
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 4.7e-26 121.7 157 58.0
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 4.7e-26 121.7 153 56.9
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 6.1e-26 121.3 133 60.2
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 8.0e-26 120.9 137 62.0
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 8.0e-26 120.9 137 62.0
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 1.4e-25 120.2 133 59.4
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 1.8e-25 119.8 140 58.6
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 1.8e-25 119.8 140 58.6
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 1.8e-25 119.8 83 77.1
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 2.3e-25 119.4 165 55.2
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 3.0e-25 119.0 140 56.4
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 3.0e-25 119.0 155 55.5
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 4.0e-25 118.6 134 61.9
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 5.2e-25 118.2 133 61.7
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 5.2e-25 118.2 156 53.8
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 6.8e-25 117.9 141 59.6
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 6.8e-25 117.9 155 54.8
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 8.8e-25 117.5 144 56.2
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 1.2e-24 117.1 133 60.2
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 1.2e-24 117.1 161 54.7
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 1.2e-24 117.1 133 60.2
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 1.2e-24 117.1 133 60.2
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 1.5e-24 116.7 139 58.3
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 2.0e-24 116.3 165 54.5
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 2.6e-24 115.9 153 54.9
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 5.7e-24 114.8 146 52.7
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 7.5e-24 114.4 139 57.6
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 9.8e-24 114.0 165 53.9
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 9.8e-24 114.0 146 56.8
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 2.8e-23 112.5 156 52.6
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 2.8e-23 112.5 140 58.6
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 3.7e-23 112.1 78 74.4
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 4.8e-23 111.7 109 66.1
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 1.1e-22 110.5 157 53.5
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 1.8e-22 109.8 67 83.6
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 2.4e-22 109.4 153 54.2
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 3.1e-22 109.0 140 51.4
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 4.1e-22 108.6 105 63.8
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 5.4e-22 108.2 147 54.4
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 1.2e-21 107.1 146 54.1
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 2.0e-21 106.3 138 55.8
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 2.0e-21 106.3 87 69.0
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 4.5e-21 105.1 147 51.7
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 7.7e-21 104.4 86 65.1
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 2.3e-20 102.8 145 51.7
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 4.2e-19 98.6 141 52.5
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 5.5e-19 98.2 79 67.1
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 7.2e-19 97.8 164 45.1
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 3.6e-18 95.5 76 68.4
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 1.7e-15 86.7 133 51.9
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 2.4e-14 82.8 102 51.0
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 9.2e-14 80.9 116 48.3
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 2.7e-13 79.3 86 58.1
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 3.8e-12 75.5 66 63.6
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 5.0e-12 75.1 123 49.6
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 5.6e-11 71.6 56 69.6
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 2.1e-10 69.7 146 44.5
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 1.5e-08 63.5 143 46.2
PRCOL_00001665 Prasinoderma coloniale HOM05D005954 ORTHO05D007347 8.3e-07 57.8 81 51.9


User provided reference genes

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