Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 9.7e-154 547.4 412 100.0
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 3.8e-134 482.3 426 90.6
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 7.0e-120 434.9 384 87.2
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 2.9e-113 412.9 381 88.5
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 1.2e-100 370.9 381 81.4
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.2e-98 364.4 418 75.1
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 1.7e-97 360.5 407 75.4
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 2.9e-97 359.8 386 80.3
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 8.3e-97 358.2 385 82.1
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 7.8e-95 351.7 405 76.0
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 1.3e-94 350.9 393 74.8
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 9.5e-93 344.7 408 72.3
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 1.2e-92 344.4 406 76.4
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.4e-91 340.9 405 71.1
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 1.8e-91 340.5 366 77.6
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 1.2e-90 337.8 389 76.1
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.3e-89 334.3 389 74.8
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 2.2e-89 333.6 389 77.4
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 8.4e-89 331.6 431 66.1
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 1.1e-88 331.3 381 79.0
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 2.4e-88 330.1 386 75.6
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 4.1e-88 329.3 382 73.6
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 5.4e-88 328.9 379 76.3
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 9.2e-88 328.2 382 75.4
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 2.3e-86 323.6 326 83.1
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 1.1e-85 321.2 386 72.3
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 5.6e-85 318.9 381 73.8
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 7.3e-85 318.5 386 73.1
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.2e-84 317.8 384 76.3
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.8e-84 316.6 380 75.3
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 6.2e-84 315.5 389 74.0
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 8.1e-84 315.1 380 74.7
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 8.1e-84 315.1 426 70.0
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 1.1e-83 314.7 379 74.1
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.1e-83 314.7 379 74.1
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 1.4e-83 314.3 382 72.3
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.8e-83 313.9 380 75.0
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 3.1e-83 313.2 381 73.0
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 3.1e-83 313.2 384 73.7
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 6.8e-83 312.0 426 70.0
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 6.8e-83 312.0 379 76.3
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 6.8e-83 312.0 385 76.4
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 6.8e-83 312.0 382 72.0
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 2.6e-82 310.1 409 69.2
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.6e-82 310.1 379 76.3
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 1.3e-81 307.8 379 68.6
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 1.4e-80 304.3 384 74.5
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 1.4e-80 304.3 398 69.6
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 3.2e-80 303.1 346 76.0
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 5.4e-80 302.4 389 74.0
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 7.1e-80 302.0 384 73.7
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 2.1e-79 300.4 390 68.7
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 3.5e-79 299.7 384 68.2
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 6.0e-79 298.9 385 71.7
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 6.0e-79 298.9 353 73.4
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 6.0e-79 298.9 411 65.2
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 7.8e-79 298.5 383 74.2
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 7.8e-79 298.5 385 74.3
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 1.0e-78 298.1 384 70.1
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.7e-78 297.4 385 70.1
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 2.3e-78 297.0 386 69.9
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 3.9e-78 296.2 410 65.4
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 6.6e-78 295.4 385 71.7
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 8.1e-76 288.5 382 75.4
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 2.4e-75 287.0 389 71.2
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 4.0e-75 286.2 379 69.9
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 5.3e-75 285.8 365 74.5
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 6.9e-75 285.4 385 68.8
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.5e-74 284.3 410 67.6
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 2.0e-74 283.9 395 69.4
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 3.4e-74 283.1 384 68.5
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 9.9e-74 281.6 423 66.0
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 1.7e-73 280.8 383 72.6
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 2.9e-73 280.0 322 73.0
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 2.9e-73 280.0 380 73.4
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 8.4e-73 278.5 385 68.8
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 1.1e-72 278.1 319 74.0
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 1.4e-72 277.7 386 70.7
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 5.4e-72 275.8 386 71.2
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 9.3e-72 275.0 369 72.4
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 9.3e-72 275.0 351 72.9
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 1.2e-71 274.6 415 67.0
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 3.5e-71 273.1 382 69.6
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 1.7e-70 270.8 396 63.6
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 1.7e-70 270.8 394 69.3
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 3.0e-70 270.0 386 67.4
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 5.1e-70 269.2 400 64.8
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.5e-69 267.7 386 65.5
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 1.9e-69 267.3 389 69.2
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 1.6e-68 264.2 379 71.8
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 2.8e-68 263.5 418 63.4
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 1.1e-67 261.5 390 62.6
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 3.4e-66 256.5 391 65.5
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 1.3e-65 254.6 391 70.6
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 2.9e-65 253.4 193 64.8
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 4.9e-65 252.7 408 64.5
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.4e-64 251.1 378 67.2
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 3.2e-64 250.0 391 63.9
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 6.0e-63 245.7 391 63.4
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 1.9e-61 240.7 387 65.9
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 4.3e-61 239.6 396 63.9
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 4.3e-61 239.6 407 64.4
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 7.4e-61 238.8 388 66.2
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.8e-60 236.9 370 63.5
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 3.7e-60 236.5 375 64.5
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 4.8e-60 236.1 387 63.6
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 1.1e-59 235.0 385 64.4
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 1.8e-59 234.2 390 65.1
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 6.9e-59 232.3 326 69.0
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 1.5e-58 231.1 284 85.6
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 7.6e-58 228.8 432 60.2
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 7.6e-58 228.8 432 60.2
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 7.6e-58 228.8 432 60.2
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 1.0e-57 228.4 407 60.0
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 2.2e-57 227.3 394 63.7
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 2.2e-57 227.3 394 63.7
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 3.8e-57 226.5 398 62.1
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 6.5e-57 225.7 398 61.3
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 1.9e-56 224.2 387 66.1
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 9.3e-56 221.9 391 59.3
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 2.3e-54 217.2 292 76.0
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 6.7e-54 215.7 384 68.5
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 1.5e-53 214.5 430 62.6
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 1.5e-53 214.5 389 59.4
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.5e-53 214.5 388 66.8
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 7.4e-53 212.2 430 62.3
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 7.4e-53 212.2 393 42.5
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 7.6e-50 202.2 379 66.5
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 1.3e-49 201.4 420 55.7
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 2.2e-49 200.7 404 62.9
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.0e-46 191.8 387 65.9
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.0e-46 191.8 387 65.9
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 1.8e-46 191.0 328 62.2
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 2.3e-46 190.7 387 65.6
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 3.9e-46 189.9 367 65.9
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.5e-45 188.0 383 62.4
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 3.4e-42 176.8 387 41.9
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 1.1e-40 171.8 270 70.0
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 2.5e-40 170.6 339 54.6
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 3.2e-40 170.2 372 62.9
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 3.6e-39 166.8 399 57.9
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 1.4e-38 164.9 419 51.3
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 5.1e-38 162.9 212 50.9
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 1.3e-36 158.3 192 51.6
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.3e-36 158.3 330 64.5
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 6.3e-36 156.0 402 56.5
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 1.5e-34 151.4 167 50.3
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 2.6e-34 150.6 131 58.8
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 4.5e-34 149.8 396 47.5
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 7.7e-34 149.1 416 56.0
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 2.5e-32 144.1 337 57.0
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 3.2e-32 143.7 408 49.8
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 3.6e-31 140.2 121 66.1
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 5.7e-29 132.9 278 69.4
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 2.8e-28 130.6 258 65.9
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 9.1e-27 125.6 245 78.0
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 2.6e-26 124.0 111 75.7
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 4.5e-26 123.2 410 52.9
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 3.8e-17 93.6 90 56.7
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 1.9e-16 91.3 217 34.6
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 2.7e-15 87.4 249 56.2
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 4.7e-15 86.7 101 48.5
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.4e-14 85.1 96 50.0
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 4.4e-13 80.1 170 40.6
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 1.4e-11 75.1 161 34.2
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.2e-10 72.0 87 51.7
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 2.7e-10 70.9 54 63.0
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 6.5e-09 66.2 54 59.3
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.1e-08 65.5 98 53.1
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 2.5e-08 64.3 55 54.5
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 9.5e-08 62.4 54 55.6
Rhsim02G0089500 Rhododendron simsii HOM05D000054 ORTHO05D000171 1.8e-06 58.2 70 42.9
HanXRQChr04g0116951 Helianthus annuus HOM05D004193 ORTHO05D004862 5.2e-06 56.6 44 56.8
PGR083G0101 Punica granatum HOM05D000054 ORTHO05D000171 6.8e-06 56.2 83 39.8
Rhsim02G0089100 Rhododendron simsii HOM05D000054 ORTHO05D000171 8.8e-06 55.8 70 42.9


User provided reference genes

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