Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 5.1e-157 557.8 295 100.0
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 1.4e-141 506.5 299 91.6
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 2.4e-122 442.6 301 80.1
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 3.4e-116 422.2 303 78.5
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 1.6e-105 386.7 305 71.1
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 7.8e-105 384.4 306 72.9
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 1.1e-101 374.0 299 71.6
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 3.7e-99 365.5 298 68.8
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 4.9e-99 365.2 299 68.6
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 1.4e-98 363.6 304 68.1
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 3.2e-98 362.5 304 69.1
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 8.6e-96 354.4 298 67.1
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.1e-81 306.6 299 59.2
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 2.7e-81 306.2 299 59.2
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 1.0e-72 277.7 303 54.5
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 3.9e-72 275.8 302 56.3
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 5.6e-71 271.9 302 53.0
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 1.6e-70 270.4 307 54.4
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 4.8e-70 268.9 306 54.9
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 9.0e-69 264.6 302 52.6
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.2e-68 264.2 302 55.6
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 2.0e-68 263.5 300 55.7
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 9.9e-68 261.2 303 52.5
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 4.9e-67 258.8 299 51.8
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 2.4e-66 256.5 292 53.4
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 2.7e-65 253.1 301 50.8
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 4.6e-65 252.3 299 51.2
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 3.0e-64 249.6 289 52.2
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 1.9e-63 246.9 307 52.8
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 7.4e-63 245.0 294 50.0
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 2.1e-62 243.4 307 48.2
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 2.1e-62 243.4 309 49.5
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.8e-62 243.0 308 51.0
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 6.2e-62 241.9 306 50.7
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 1.4e-61 240.7 304 51.0
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 1.8e-61 240.4 299 50.8
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 6.9e-61 238.4 297 49.8
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 9.0e-61 238.0 305 48.5
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.5e-60 237.3 304 51.0
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.0e-60 236.9 301 51.5
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 3.4e-60 236.1 309 48.9
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 3.4e-60 236.1 301 51.5
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 7.6e-60 235.0 301 51.5
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 9.9e-60 234.6 307 47.9
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.3e-59 234.2 301 51.2
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.3e-59 234.2 291 51.2
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 1.7e-59 233.8 301 50.8
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 2.2e-59 233.4 307 46.9
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 6.4e-59 231.9 310 47.1
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 8.4e-59 231.5 289 51.6
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 8.4e-59 231.5 309 47.9
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 1.4e-58 230.7 307 47.6
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 1.4e-58 230.7 310 47.1
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 1.4e-58 230.7 284 50.7
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 2.5e-58 229.9 304 49.0
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 4.2e-58 229.2 301 50.5
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 5.5e-58 228.8 301 49.2
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 5.5e-58 228.8 288 51.0
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 5.5e-58 228.8 309 47.6
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 5.5e-58 228.8 306 47.7
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 1.2e-57 227.6 313 46.3
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 2.1e-57 226.9 309 47.9
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 2.1e-57 226.9 309 47.9
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 2.1e-57 226.9 307 46.9
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 4.6e-57 225.7 302 50.3
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 6.0e-57 225.3 299 49.8
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 6.0e-57 225.3 303 49.2
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 1.3e-56 224.2 332 45.2
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 2.3e-56 223.4 304 48.4
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 2.3e-56 223.4 304 48.4
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 1.1e-55 221.1 299 47.5
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 1.1e-55 221.1 312 48.1
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 7.4e-55 218.4 300 47.7
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 7.4e-55 218.4 309 46.9
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 1.6e-54 217.2 285 49.1
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 2.1e-54 216.9 305 46.6
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 4.8e-54 215.7 304 46.1
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 6.2e-54 215.3 306 46.4
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 1.4e-53 214.2 312 43.9
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.4e-53 213.4 304 46.1
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 4.0e-53 212.6 304 46.1
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 9.0e-53 211.5 305 45.9
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 1.3e-51 207.6 300 47.0
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 1.3e-51 207.6 292 47.6
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 2.2e-51 206.8 321 44.5
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 3.8e-51 206.1 291 46.7
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 1.4e-50 204.1 251 49.8
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.4e-50 204.1 320 43.1
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.4e-50 204.1 320 43.1
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 2.5e-50 203.4 310 43.5
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 3.2e-50 203.0 299 44.5
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 4.2e-50 202.6 320 45.3
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 4.2e-50 202.6 261 49.0
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 9.3e-50 201.4 301 44.5
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 4.6e-49 199.1 305 43.3
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 6.1e-49 198.7 302 43.7
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 6.1e-49 198.7 293 44.7
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 6.1e-49 198.7 293 45.4
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 1.8e-48 197.2 271 46.5
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 3.9e-48 196.1 310 44.5
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 3.9e-48 196.1 278 44.2
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 5.1e-48 195.7 308 44.5
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 6.7e-48 195.3 310 43.5
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.1e-47 194.5 293 44.7
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 1.5e-47 194.1 300 44.7
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 1.3e-46 191.0 301 43.2
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 4.8e-46 189.1 262 47.3
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 4.8e-46 189.1 296 42.9
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 6.3e-46 188.7 277 44.4
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 1.8e-45 187.2 287 42.2
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 3.1e-45 186.4 290 42.1
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 1.2e-44 184.5 269 46.8
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 2.6e-44 183.3 304 44.1
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 2.6e-44 183.3 302 42.7
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 2.9e-43 179.9 200 56.0
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 4.6e-41 172.6 245 46.9
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 1.8e-40 170.6 303 41.9
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 5.7e-39 165.6 294 41.8
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 1.4e-34 151.0 317 39.4
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 7.2e-26 122.1 155 48.4
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 2.7e-25 120.2 222 37.4
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 5.2e-24 115.9 147 49.7
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 1.1e-23 114.8 266 34.2
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 2.9e-19 100.1 171 41.5
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 9.7e-15 85.1 180 34.4
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 1.3e-14 84.7 121 45.5
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 2.7e-12 77.0 101 50.5
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 6.3e-06 55.8 115 39.1


User provided reference genes

Program Settings