Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 4.3e-150 534.6 270 100.0
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 2.4e-121 439.1 276 81.5
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 4.4e-115 418.3 271 77.1
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 8.4e-114 414.1 271 76.4
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 1.4e-113 413.3 265 79.2
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 7.6e-107 391.0 262 74.4
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 2.3e-103 379.4 270 68.1
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 3.0e-103 379.0 268 69.8
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 9.6e-94 347.4 241 71.8
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 2.4e-92 342.8 274 64.2
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 3.1e-92 342.4 264 65.5
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 3.1e-92 342.4 242 69.8
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 4.1e-92 342.0 274 63.9
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 5.3e-92 341.7 266 68.0
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 1.2e-91 340.5 281 64.1
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 1.2e-91 340.5 273 63.0
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.0e-90 337.4 268 65.3
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 1.3e-90 337.0 265 65.7
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 1.1e-89 334.0 240 66.7
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 7.1e-89 331.3 256 66.0
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 1.2e-88 330.5 249 65.9
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 1.6e-88 330.1 270 63.0
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 2.1e-88 329.7 274 62.8
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 3.5e-88 328.9 259 63.7
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 6.1e-88 328.2 273 63.4
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 6.1e-88 328.2 240 65.8
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 7.9e-88 327.8 249 65.1
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 1.8e-87 326.6 246 63.8
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 5.1e-87 325.1 277 59.9
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 6.7e-87 324.7 271 60.1
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.5e-86 323.6 273 58.6
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 1.5e-86 323.6 242 66.9
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 4.3e-86 322.0 259 62.2
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 7.4e-86 321.2 245 68.2
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 1.3e-85 320.5 269 60.6
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 2.2e-85 319.7 239 65.3
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 2.8e-85 319.3 265 60.4
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 3.7e-85 318.9 269 60.2
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 3.7e-85 318.9 242 66.5
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 6.3e-85 318.2 256 64.5
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 1.4e-84 317.0 254 65.4
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.8e-84 316.6 270 59.6
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 1.8e-84 316.6 245 63.7
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 2.4e-84 316.2 245 63.7
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 3.1e-84 315.8 267 59.9
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 6.9e-84 314.7 240 64.2
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 6.9e-84 314.7 277 58.8
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 2.0e-83 313.2 270 60.0
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 4.5e-83 312.0 279 58.8
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 4.5e-83 312.0 245 62.9
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 5.9e-83 311.6 242 64.0
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 1.0e-82 310.8 244 62.3
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 2.2e-82 309.7 242 63.6
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 3.8e-82 308.9 237 63.7
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.8e-82 308.9 274 59.5
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.5e-82 308.1 242 63.2
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 1.9e-81 306.6 239 62.3
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.9e-81 306.6 274 59.1
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 1.4e-79 300.4 244 61.5
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 2.3e-79 299.7 244 61.5
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 3.0e-79 299.3 234 62.8
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 8.8e-79 297.7 275 57.5
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 1.5e-78 297.0 244 61.9
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 3.3e-78 295.8 236 63.6
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 9.7e-78 294.3 277 56.7
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 9.7e-78 294.3 243 60.9
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 1.3e-77 293.9 244 60.2
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 6.3e-77 291.6 233 59.7
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 1.4e-76 290.4 244 59.0
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 1.4e-76 290.4 254 58.3
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 1.4e-76 290.4 254 58.3
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 1.8e-76 290.0 265 57.4
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 1.8e-76 290.0 244 59.4
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 1.8e-76 290.0 246 59.3
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 1.8e-76 290.0 244 59.4
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 9.1e-76 287.7 244 59.8
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 1.5e-75 287.0 246 58.9
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 1.5e-75 287.0 257 56.4
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 2.0e-75 286.6 240 60.0
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 2.0e-75 286.6 240 60.0
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 3.4e-75 285.8 269 56.9
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 3.2e-73 279.3 240 61.2
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 2.1e-72 276.6 206 66.0
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 3.0e-71 272.7 272 52.9
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 2.6e-70 269.6 198 65.7
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 7.4e-70 268.1 198 66.2
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.4e-70 268.1 227 59.9
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 9.7e-70 267.7 224 60.7
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 8.2e-69 264.6 180 77.8
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 2.4e-68 263.1 245 57.1
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 5.9e-67 258.5 270 53.0
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 6.5e-66 255.0 258 53.1
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 8.5e-66 254.6 264 52.3
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 2.5e-65 253.1 239 53.1
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 9.4e-65 251.1 245 53.5
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 1.0e-63 247.7 262 50.8
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 2.0e-59 233.4 219 55.7
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.3e-58 230.7 255 50.2
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 2.9e-58 229.6 218 54.1
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-57 227.6 187 60.4
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-55 220.3 181 60.8
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 2.7e-51 206.5 160 64.4
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.2e-49 198.4 231 50.2
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-45 187.6 221 50.2
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.2e-43 181.0 124 69.4
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 3.6e-40 169.5 122 65.6
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.0e-35 153.7 146 52.1
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 2.0e-35 153.7 218 38.5
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 9.5e-33 144.8 153 49.7
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.2e-32 144.4 257 39.3
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.3e-31 140.2 124 55.6
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.2e-29 133.7 125 55.2
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.7e-29 132.9 116 57.8
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 7.3e-25 118.6 112 56.2
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.8e-23 114.0 74 71.6
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.9e-23 111.7 103 53.4
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 9.8e-22 108.2 86 61.6
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.6e-19 99.4 71 69.0
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 7.8e-19 98.6 68 67.6
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.7e-18 97.4 123 47.2
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.1e-18 95.9 97 50.5
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 8.1e-16 88.6 91 48.4
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 8.9e-15 85.1 113 41.6
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 1.2e-14 84.7 78 53.8
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 2.0e-14 84.0 83 44.6
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 4.9e-13 79.3 66 54.5
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.4e-13 79.0 99 44.4
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.2e-12 75.1 70 51.4
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.5e-11 73.2 56 58.9
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.2e-08 64.7 175 29.1
Cfa022886 Carpinus fangiana HOM05D005360 ORTHO05D006501 6.2e-08 62.4 213 26.3
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.2e-08 62.4 88 40.9
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.5e-06 57.8 31 80.6
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 2.0e-06 57.4 71 39.4
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 2.0e-06 57.4 48 45.8
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 9.9e-06 55.1 79 39.2
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 9.9e-06 55.1 79 38.0


User provided reference genes

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