Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G219500 Glycine max HOM05D007268 ORTHO05D009152 1.9e-56 222.2 108 100.0
Phvul.006G166200 Phaseolus vulgaris HOM05D007268 ORTHO05D009152 2.3e-46 188.7 113 83.2
Eucgr.E02425 Eucalyptus grandis HOM05D007268 ORTHO05D009152 3.8e-41 171.4 100 83.0
TPR.G26254 Trifolium pratense HOM05D007268 ORTHO05D009152 8.4e-41 170.2 110 77.3
Medtr2g019100 Medicago truncatula HOM05D007268 ORTHO05D009152 1.1e-40 169.9 108 76.9
Ca_00530_v3 Cicer arietinum L. HOM05D007268 ORTHO05D009152 4.2e-40 167.9 105 80.0
Potri.015G138100 Populus trichocarpa HOM05D007268 ORTHO05D009152 4.2e-40 167.9 89 91.0
Manes.17G072200 Manihot esculenta HOM05D007268 ORTHO05D009152 7.1e-40 167.2 93 84.9
Psat1g188600 Pisum sativum HOM05D007268 ORTHO05D009152 7.1e-40 167.2 107 75.7
Sabra15G0149200 Salix brachista HOM05D007268 ORTHO05D009152 1.2e-39 166.4 91 87.9
Lalb_Chr18g0055321 Lupinus albus HOM05D007268 ORTHO05D009152 3.5e-39 164.9 87 88.5
Thecc.06G148000 Theobroma cacao HOM05D007268 ORTHO05D009152 6.0e-39 164.1 95 81.1
MBI02_g20985_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 1.3e-38 162.9 97 79.4
Ciclev10017240m.g Citrus clementina HOM05D007268 ORTHO05D009152 1.8e-38 162.5 103 75.7
TWI53G0467 Tripterygium wilfordii HOM05D007268 ORTHO05D009152 2.3e-38 162.2 97 80.4
Cfa000925 Carpinus fangiana HOM05D007268 ORTHO05D009152 3.9e-38 161.4 91 83.5
Duzib160G0929 Durio zibethinus HOM05D007268 ORTHO05D009152 3.9e-38 161.4 91 82.4
THA.LOC104798395 Tarenaya hassleriana HOM05D007268 ORTHO05D009152 3.9e-38 161.4 89 84.3
Duzib235G0597 Durio zibethinus HOM05D007268 ORTHO05D009152 5.1e-38 161.0 91 82.4
Gohir.A10G042300 Gossypium hirsutum HOM05D007268 ORTHO05D009152 6.7e-38 160.6 91 80.2
MD05G1281500 Malus domestica HOM05D007268 ORTHO05D009152 6.7e-38 160.6 87 86.2
Gorai.011G045800 Gossypium raimondii HOM05D007268 ORTHO05D009152 8.7e-38 160.2 89 82.0
PGR031G1097 Punica granatum HOM05D007268 ORTHO05D009152 1.1e-37 159.8 92 82.6
BraA03t14206Z Brassica rapa HOM05D007268 ORTHO05D009152 1.5e-37 159.5 97 77.3
Rhsim13G0115400 Rhododendron simsii HOM05D007268 ORTHO05D009152 1.5e-37 159.5 103 72.8
Aqoxy4G02868 Aquilegia oxysepala HOM05D007268 ORTHO05D009152 1.9e-37 159.1 94 75.5
BcaNung02699 Brassica carinata HOM05D007268 ORTHO05D009152 1.9e-37 159.1 96 78.1
C07p49660 Brassica napus HOM05D007268 ORTHO05D009152 1.9e-37 159.1 96 78.1
BolC7t45467H Brassica oleracea HOM05D007268 ORTHO05D009152 1.9e-37 159.1 96 78.1
CARHR225150 Cardamine hirsuta HOM05D007268 ORTHO05D009152 1.9e-37 159.1 93 78.5
AL7G36000 Arabidopsis lyrata HOM05D007268 ORTHO05D009152 2.5e-37 158.7 89 82.0
CsaV3_1G004630 Cucumis sativus L. HOM05D007268 ORTHO05D009152 2.5e-37 158.7 104 75.0
Gohir.D10G043200 Gossypium hirsutum HOM05D007268 ORTHO05D009152 2.5e-37 158.7 89 80.9
Sopen08g010950 Solanum pennellii HOM05D007268 ORTHO05D009152 2.5e-37 158.7 93 81.7
AT4G18372 Arabidopsis thaliana HOM05D007268 ORTHO05D009152 3.3e-37 158.3 96 79.2
A01p10290 Brassica napus HOM05D007268 ORTHO05D009152 3.3e-37 158.3 95 76.8
A03p51230 Brassica napus HOM05D007268 ORTHO05D009152 3.3e-37 158.3 93 77.4
BraA01t00976Z Brassica rapa HOM05D007268 ORTHO05D009152 3.3e-37 158.3 95 76.8
CiPaw.09G121900 Carya illinoinensis HOM05D007268 ORTHO05D009152 3.3e-37 158.3 89 84.3
QL05p055849 Quercus lobata HOM05D007268 ORTHO05D009152 3.3e-37 158.3 100 77.0
BcaC06g30594 Brassica carinata HOM05D007268 ORTHO05D009152 4.3e-37 157.9 96 78.1
BcaC09g51527 Brassica carinata HOM05D007268 ORTHO05D009152 4.3e-37 157.9 95 76.8
BcaNung00009 Brassica carinata HOM05D007268 ORTHO05D009152 4.3e-37 157.9 96 78.1
Carub.0007s2291 Capsella rubella HOM05D007268 ORTHO05D009152 4.3e-37 157.9 96 76.0
Prupe.4G083100 Prunus persica HOM05D007268 ORTHO05D009152 4.3e-37 157.9 89 85.4
vmacro03337 Vaccinium macrocarpon HOM05D007268 ORTHO05D009152 4.3e-37 157.9 101 73.3
C01p12240 Brassica napus HOM05D007268 ORTHO05D009152 5.7e-37 157.5 89 80.9
BolC1t01200H Brassica oleracea HOM05D007268 ORTHO05D009152 5.7e-37 157.5 89 80.9
ClCG03G006700 Citrullus lanatus HOM05D007268 ORTHO05D009152 5.7e-37 157.5 104 74.0
Thhalv10026609m.g Eutrema salsugineum HOM05D007268 ORTHO05D009152 5.7e-37 157.5 89 80.9
Solyc08g048540.2 Solanum lycopersicum HOM05D007268 ORTHO05D009152 5.7e-37 157.5 93 80.6
RcHm_v2.0_Chr5g0014441 Rosa chinensis HOM05D007268 ORTHO05D009152 7.4e-37 157.1 90 81.1
Nn3g20236 Nelumbo nucifera HOM05D007268 ORTHO05D009152 9.7e-37 156.8 93 79.6
Sp7g15690 Schrenkiella parvula HOM05D007268 ORTHO05D009152 9.7e-37 156.8 89 80.9
Lsat_1_v5_gn_7_27661 Lactuca sativa HOM05D007268 ORTHO05D009152 1.3e-36 156.4 100 75.0
CSS0021934 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 2.2e-36 155.6 92 80.4
Oeu030940.1 Olea europaea HOM05D007268 ORTHO05D009152 2.2e-36 155.6 93 79.6
Ah.04g158630 Amaranthus hybridus HOM05D007268 ORTHO05D009152 2.8e-36 155.2 103 69.9
Sed0026056 Sechium edule HOM05D007268 ORTHO05D009152 2.8e-36 155.2 87 82.8
CAN.G42.16 Capsicum annuum HOM05D007268 ORTHO05D009152 3.7e-36 154.8 93 77.4
DCAR_003898 Daucus carota HOM05D007268 ORTHO05D009152 3.7e-36 154.8 100 73.0
Dinv32234 Davidia involucrata HOM05D007268 ORTHO05D009152 3.7e-36 154.8 93 78.5
SGA_v2.0_scaffold1G00193 Striga asiatica HOM05D007268 ORTHO05D009152 3.7e-36 154.8 101 71.3
BcaC06g30591 Brassica carinata HOM05D007268 ORTHO05D009152 4.8e-36 154.5 96 75.0
CSS0030281 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 4.8e-36 154.5 92 79.3
Aa31LG6G1080 Aethionema arabicum HOM05D007268 ORTHO05D009152 6.3e-36 154.1 89 79.8
ECA236G4633 Erigeron canadensis HOM05D007268 ORTHO05D009152 6.3e-36 154.1 101 70.3
PGSC0003DMG400029871 Solanum tuberosum HOM05D007268 ORTHO05D009152 8.2e-36 153.7 93 78.5
FvH4_3g05282 Fragaria vesca HOM05D007268 ORTHO05D009152 1.1e-35 153.3 90 80.0
Hund21552 Selenicereus undatus HOM05D007268 ORTHO05D009152 1.1e-35 153.3 87 80.5
Atru.chr10.1171 Acer truncatum HOM05D007268 ORTHO05D009152 2.4e-35 152.1 99 75.8
Actinidia32339 Actinidia chinensis HOM05D007268 ORTHO05D009152 4.1e-35 151.4 90 81.1
Sc24g0001710 Simmondsia chinensis HOM05D007268 ORTHO05D009152 4.1e-35 151.4 88 79.5
CAN.G500.67 Capsicum annuum HOM05D007268 ORTHO05D009152 9.0e-35 150.2 93 77.4
CiPaw.10G090400 Carya illinoinensis HOM05D007268 ORTHO05D009152 1.5e-34 149.4 90 78.9
Migut.M00895 Erythranthe guttata HOM05D007268 ORTHO05D009152 2.6e-34 148.7 87 78.2
CANSAT21G2169 Cannabis sativa HOM05D007268 ORTHO05D009152 1.0e-33 146.7 90 75.6
FAN25G0109 Fragaria x ananassa HOM05D007268 ORTHO05D009152 1.0e-33 146.7 90 75.6
MSTRG.7499 Avicennia marina HOM05D007268 ORTHO05D009152 1.3e-33 146.4 93 72.0
AUR62006739 Chenopodium quinoa HOM05D007268 ORTHO05D009152 1.3e-33 146.4 87 77.0
unitig_92.g28163 Utricularia gibba HOM05D007268 ORTHO05D009152 1.3e-33 146.4 110 65.5
Atru.chr4.1816 Acer truncatum HOM05D007268 ORTHO05D009152 2.2e-33 145.6 99 73.7
GSVIVG01035542001 Vitis vinifera HOM05D007268 ORTHO05D009152 6.5e-33 144.1 76 88.2
SalBow8G1886 Salvia bowleyana HOM05D007268 ORTHO05D009152 1.1e-32 143.3 77 85.7
PSO541G1787 Papaver somniferum HOM05D007268 ORTHO05D009152 3.2e-32 141.7 104 71.2
HanXRQChr04g0115721 Helianthus annuus HOM05D007268 ORTHO05D009152 1.6e-31 139.4 76 85.5
Zm00001eb273860 Zea mays HOM05D007268 ORTHO05D009152 1.6e-31 139.4 93 69.9
MBI02_g43299_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 3.6e-31 138.3 78 79.5
ATR0618G449 Amborella trichopoda HOM05D007268 ORTHO05D009152 6.1e-31 137.5 100 64.0
unitig_37.g12097 Utricularia gibba HOM05D007268 ORTHO05D009152 6.1e-31 137.5 87 72.4
Os06g0677600 Oryza sativa ssp. japonica HOM05D007268 ORTHO05D009152 1.0e-30 136.7 100 67.0
arahy.Tifrunner.gnm1.ann1.H0S66A Arachis hypogaea HOM05D007268 ORTHO05D009152 3.0e-30 135.2 101 73.3
HPP92_004157 Vanilla planifolia HOM05D007268 ORTHO05D009152 6.7e-30 134.0 86 72.1
Solyc08g048520.1 Solanum lycopersicum HOM05D007268 ORTHO05D009152 8.8e-30 133.7 93 68.8
FAN16G0810 Fragaria x ananassa HOM05D007268 ORTHO05D009152 1.1e-29 133.3 83 75.9
Zm00001eb224700 Zea mays HOM05D007268 ORTHO05D009152 3.3e-29 131.7 91 67.0
Cc09_g08780 Coffea canephora HOM05D007268 ORTHO05D009152 7.4e-29 130.6 76 81.6
EL10Ac4g09469 Beta vulgaris HOM05D007268 ORTHO05D009152 9.7e-29 130.2 77 79.2
FAN21G3321 Fragaria x ananassa HOM05D007268 ORTHO05D009152 1.2e-26 123.2 71 81.7
Pp3c2_29020 Physcomitrium patens HOM05D007268 ORTHO05D009152 4.2e-24 114.8 109 47.7
Mapoly0012s0147 Marchantia polymorpha HOM05D007268 ORTHO05D009152 2.1e-23 112.5 106 51.9
SEGI_36221 Sequoiadendron giganteum HOM05D007268 ORTHO05D009152 7.9e-23 110.5 97 55.7
SMO358G0115 Selaginella moellendorffii HOM05D007268 ORTHO05D009152 6.7e-22 107.5 102 52.9
Nitab4.5_0005488g0010 Nicotiana tabacum HOM05D007268 ORTHO05D009152 7.7e-18 94.0 101 52.5
SHI24845 Sapria himalayana HOM05D007268 ORTHO05D009152 5.0e-17 91.3 76 55.3
CBR_g29441 Chara braunii HOM05D007268 ORTHO05D009152 8.0e-15 84.0 111 40.5
PRCOL_00005812 Prasinoderma coloniale HOM05D007268 ORTHO05D009152 9.1e-11 70.5 99 40.4


User provided reference genes

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