Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 9.1e-190 666.8 344 100.0
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 6.0e-165 584.3 345 84.9
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 5.3e-145 518.1 306 80.4
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.2e-144 516.9 290 85.2
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 4.5e-136 488.4 292 79.1
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.9e-134 483.0 296 77.0
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 4.6e-133 478.4 296 77.7
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 1.8e-132 476.5 313 73.8
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 4.0e-129 465.3 290 76.6
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 3.4e-128 462.2 317 72.9
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 8.4e-127 457.6 290 75.5
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.9e-126 456.4 282 75.2
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 2.1e-125 453.0 299 71.9
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.8e-124 449.9 304 72.4
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 3.9e-124 448.7 290 72.4
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 4.3e-123 445.3 290 73.4
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 7.4e-123 444.5 316 68.0
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 1.3e-122 443.7 283 73.1
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 2.8e-122 442.6 296 70.9
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 4.8e-122 441.8 296 70.3
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 4.8e-122 441.8 293 70.6
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 4.8e-122 441.8 288 72.9
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 8.2e-122 441.0 294 70.7
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 8.2e-122 441.0 290 71.7
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.1e-121 440.7 300 69.0
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 1.4e-121 440.3 300 69.7
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 1.8e-121 439.9 316 67.4
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 1.8e-121 439.9 292 71.6
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 4.1e-121 438.7 288 71.5
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 1.2e-120 437.2 299 70.2
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 1.5e-120 436.8 287 70.0
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 2.0e-120 436.4 299 68.9
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 2.6e-120 436.0 287 69.7
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 2.6e-120 436.0 298 71.5
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 2.6e-120 436.0 295 70.8
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 4.5e-120 435.3 297 69.7
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 5.8e-120 434.9 290 70.3
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 5.8e-120 434.9 288 70.1
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 5.8e-120 434.9 286 71.7
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 1.0e-119 434.1 298 68.8
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 1.3e-119 433.7 297 69.7
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.9e-119 432.6 300 68.7
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.9e-119 432.6 300 68.7
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 6.5e-119 431.4 292 71.6
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 8.4e-119 431.0 292 69.5
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 8.4e-119 431.0 297 69.4
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 7.2e-118 427.9 297 69.4
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 7.2e-118 427.9 297 67.7
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 1.6e-117 426.8 289 68.9
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 4.6e-117 425.2 296 68.2
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 1.0e-116 424.1 277 71.1
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 2.3e-116 422.9 307 66.1
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 8.7e-116 421.0 303 68.3
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 8.7e-116 421.0 289 69.6
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 1.5e-115 420.2 284 69.4
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 3.3e-115 419.1 288 69.1
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 4.3e-115 418.7 268 70.9
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 7.4e-115 417.9 276 70.7
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 3.7e-114 415.6 308 65.9
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 8.2e-114 414.5 281 68.0
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 8.2e-114 414.5 289 72.7
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 1.4e-113 413.7 300 65.3
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 1.4e-113 413.7 302 67.2
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 3.1e-113 412.5 299 65.2
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 4.1e-113 412.1 290 67.6
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 5.3e-113 411.8 277 68.2
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.2e-112 410.6 297 66.0
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 5.9e-112 408.3 303 64.4
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 7.7e-112 407.9 305 64.6
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 1.3e-111 407.1 295 65.4
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 1.7e-111 406.8 309 66.0
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 2.2e-111 406.4 293 66.2
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.2e-111 406.4 308 64.3
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 3.8e-111 405.6 277 67.1
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 5.0e-111 405.2 301 67.4
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 5.0e-111 405.2 317 62.8
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 1.1e-110 404.1 318 62.3
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.9e-110 403.3 314 63.1
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 7.2e-110 401.4 295 64.1
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 9.4e-110 401.0 284 68.0
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 1.2e-109 400.6 319 62.4
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 1.6e-109 400.2 290 64.5
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 2.1e-109 399.8 288 66.3
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.6e-109 399.1 283 67.5
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 7.9e-109 397.9 280 65.4
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 3.0e-108 396.0 268 68.7
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 1.1e-107 394.0 303 64.0
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 7.4e-107 391.3 268 72.0
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 7.4e-107 391.3 265 68.3
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 2.8e-106 389.4 262 69.1
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 2.4e-105 386.3 280 65.0
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 9.1e-105 384.4 301 61.1
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 9.1e-105 384.4 305 61.6
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 1.2e-104 384.0 280 65.0
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 1.0e-103 380.9 273 64.1
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 2.9e-103 379.4 286 64.3
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 3.8e-103 379.0 305 61.3
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 2.1e-101 373.2 274 64.6
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 2.7e-101 372.9 299 60.2
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 4.7e-101 372.1 298 60.7
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 6.1e-101 371.7 298 60.4
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 6.1e-101 371.7 295 61.4
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 1.4e-100 370.5 298 61.4
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.6e-99 366.3 227 74.9
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 6.3e-98 361.7 317 55.2
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 2.4e-97 359.8 297 61.6
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 9.1e-97 357.8 303 58.4
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 4.5e-96 355.5 227 73.1
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 4.5e-96 355.5 352 54.0
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.3e-95 354.0 304 59.2
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 1.1e-94 350.9 304 55.3
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 1.5e-94 350.5 291 60.8
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 8.0e-93 344.7 323 56.7
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 2.6e-91 339.7 288 58.3
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 1.3e-90 337.4 311 56.3
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.8e-90 335.5 352 51.4
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.8e-90 335.5 336 52.4
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 2.7e-88 329.7 284 56.3
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.0e-87 327.8 266 55.3
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 5.0e-87 325.5 331 51.4
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 5.0e-87 325.5 301 55.8
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.1e-86 324.3 263 56.7
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 1.5e-86 323.9 283 55.1
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 2.1e-85 320.1 331 51.1
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 7.0e-81 305.1 247 59.9
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 1.6e-80 303.9 303 51.8
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 8.5e-79 298.1 307 50.2
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 8.0e-77 291.6 182 73.1
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.0e-76 291.2 232 60.3
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 5.2e-76 288.9 262 52.3
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 4.4e-75 285.8 262 49.6
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 4.9e-74 282.3 310 48.7
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 4.9e-74 282.3 310 48.7
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 8.6e-71 271.6 268 50.0
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 9.5e-70 268.1 316 46.5
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 3.4e-67 259.6 270 48.9
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.8e-65 253.8 302 47.0
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 1.2e-64 251.1 178 67.4
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 6.6e-63 245.4 185 63.8
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.1e-62 244.6 296 44.6
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 5.6e-62 242.3 188 62.2
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 8.0e-61 238.4 185 62.2
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.4e-60 237.7 182 65.9
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.8e-60 237.3 182 65.4
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 2.3e-60 236.9 174 64.9
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 4.0e-60 236.1 164 67.1
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 6.8e-60 235.3 187 61.5
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.2e-59 234.6 164 65.9
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 2.9e-58 229.9 486 33.1
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 3.7e-58 229.6 165 63.6
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 4.1e-57 226.1 170 64.1
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.9e-54 217.2 232 49.1
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 4.7e-53 212.6 270 39.6
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 6.2e-53 212.2 260 40.8
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 2.4e-49 200.3 151 62.3
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 3.5e-48 196.4 345 33.3
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 9.5e-46 188.3 117 69.2
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 5.8e-43 179.1 134 63.4
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 6.4e-42 175.6 143 58.0
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 8.4e-42 175.3 146 57.5
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.6e-40 171.0 104 75.0
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.7e-39 167.5 117 65.8
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 7.3e-38 162.2 106 67.9
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 8.9e-36 155.2 128 57.0
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 3.2e-33 146.7 105 64.8
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 7.1e-33 145.6 187 46.0
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 1.0e-31 141.7 82 78.0
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 1.8e-28 131.0 138 50.0
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.3e-28 129.4 97 60.8
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.3e-28 129.4 97 60.8
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 2.4e-25 120.6 91 61.5
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 1.0e-23 115.2 96 54.2
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 3.4e-19 100.1 72 58.3
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 9.9e-19 98.6 60 73.3
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 5.5e-17 92.8 61 67.2
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.5e-14 84.0 50 74.0
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 4.5e-11 73.2 51 68.6
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 2.2e-10 70.9 55 58.2
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 1.4e-09 68.2 53 58.5
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 1.3e-07 61.6 37 75.7


User provided reference genes

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