Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G215100 Glycine max HOM05D008278 ORTHO05D009926 3.5e-35 151.8 121 100.0
LjContig00389g0012701 Lotus japonicus HOM05D008278 ORTHO05D009926 2.2e-21 105.9 57 77.2
VMungo0540G1378 Vigna mungo HOM05D008278 ORTHO05D009926 1.4e-15 86.7 57 68.4
CiPaw.02G086800 Carya illinoinensis HOM05D008278 ORTHO05D009926 8.3e-13 77.4 66 53.0
Thecc.04G277500 Theobroma cacao HOM05D008278 ORTHO05D009926 5.4e-12 74.7 68 50.0
COL.COLO4_13930 Corchorus olitorius HOM05D008278 ORTHO05D009926 1.6e-11 73.2 50 60.0
Aqoxy5G00615 Aquilegia oxysepala HOM05D008278 ORTHO05D009926 1.7e-10 69.7 59 54.2
Manes.03G191100 Manihot esculenta HOM05D008278 ORTHO05D009926 3.9e-10 68.6 57 57.9
vmacro08204 Vaccinium macrocarpon HOM05D008278 ORTHO05D009926 1.1e-09 67.0 66 48.5
Duzib151G0456 Durio zibethinus HOM05D008278 ORTHO05D009926 1.5e-09 66.6 38 63.2
TWI09G1464 Tripterygium wilfordii HOM05D008278 ORTHO05D009926 3.3e-09 65.5 58 50.0
COL.COLO4_08021 Corchorus olitorius HOM05D008278 ORTHO05D009926 7.3e-09 64.3 39 66.7
Gohir.A11G117700 Gossypium hirsutum HOM05D008278 ORTHO05D009926 7.3e-09 64.3 38 71.1
Gorai.007G131400 Gossypium raimondii HOM05D008278 ORTHO05D009926 7.3e-09 64.3 38 71.1
QL06p007372 Quercus lobata HOM05D008278 ORTHO05D009926 9.5e-09 63.9 30 80.0
Duzib138G1619 Durio zibethinus HOM05D008278 ORTHO05D009926 1.6e-08 63.2 38 71.1
Gohir.D11G122600 Gossypium hirsutum HOM05D008278 ORTHO05D009926 1.6e-08 63.2 38 68.4
Cc03_g02370 Coffea canephora HOM05D008278 ORTHO05D009926 6.2e-08 61.2 44 61.4
Thecc.01G291200 Theobroma cacao HOM05D008278 ORTHO05D009926 6.2e-08 61.2 40 65.0
Psat0s1883g0120 Pisum sativum HOM05D008278 ORTHO05D009926 1.1e-07 60.5 40 65.0
CiPaw.07G100700 Carya illinoinensis HOM05D008278 ORTHO05D009926 1.4e-07 60.1 53 52.8
CiPaw.08G100100 Carya illinoinensis HOM05D008278 ORTHO05D009926 1.4e-07 60.1 41 65.9
Hma1.2p1_0209F.1_g089030 Hydrangea macrophylla HOM05D008278 ORTHO05D009926 1.8e-07 59.7 44 56.8
Medtr7g108080 Medicago truncatula HOM05D008278 ORTHO05D009926 1.8e-07 59.7 44 56.8
Actinidia21077 Actinidia chinensis HOM05D008278 ORTHO05D009926 3.1e-07 58.9 38 63.2
SGA_v2.0_scaffold142G35700 Striga asiatica HOM05D037673 ORTHO05D050769 3.1e-07 58.9 49 57.1
DCAR_030565 Daucus carota HOM05D062847 ORTHO05D009926 4.0e-07 58.5 46 56.5
Eucgr.H03768 Eucalyptus grandis HOM05D008278 ORTHO05D009926 4.0e-07 58.5 76 43.4
Dinv04275 Davidia involucrata HOM05D008278 ORTHO05D009926 5.2e-07 58.2 48 54.2
Glyma.19G206602 Glycine max HOM05D008278 ORTHO05D009926 8.9e-07 57.4 42 52.4
Actinidia24853 Actinidia chinensis HOM05D008278 ORTHO05D009926 1.5e-06 56.6 54 51.9
PSO170G0879 Papaver somniferum HOM05D008278 ORTHO05D009926 1.5e-06 56.6 35 65.7
COL.COLO4_13623 Corchorus olitorius HOM05D008278 ORTHO05D009926 2.0e-06 56.2 49 55.1
Psat3g024600 Pisum sativum HOM05D008278 ORTHO05D009926 2.6e-06 55.8 57 45.6
Manes.09G159200 Manihot esculenta HOM05D008278 ORTHO05D009926 3.4e-06 55.5 49 51.0
Glyma.03G209200 Glycine max HOM05D008278 ORTHO05D009926 4.4e-06 55.1 36 55.6
PGR119G0374 Punica granatum HOM05D008278 ORTHO05D009926 4.4e-06 55.1 40 50.0
CSS0040059 Camellia sinensis var. sinensis HOM05D008278 ORTHO05D009926 5.8e-06 54.7 63 46.0
Manes.01G214200 Manihot esculenta HOM05D008278 ORTHO05D009926 5.8e-06 54.7 32 62.5
Lj1g0017232 Lotus japonicus HOM05D008278 ORTHO05D009926 7.6e-06 54.3 48 52.1
Phvul.006G097300 Phaseolus vulgaris HOM05D008278 ORTHO05D009926 7.6e-06 54.3 33 60.6
Thecc.05G292500 Theobroma cacao HOM05D008278 ORTHO05D009926 7.6e-06 54.3 50 52.0
Prupe.8G253200 Prunus persica HOM05D008278 ORTHO05D009926 9.9e-06 53.9 65 46.2
TWI14G0577 Tripterygium wilfordii HOM05D008278 ORTHO05D009926 9.9e-06 53.9 43 53.5


User provided reference genes

Program Settings