Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 3.1e-162 575.1 295 100.0
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 5.7e-132 474.6 309 82.8
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 3.0e-125 452.2 307 78.5
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 3.4e-124 448.7 307 78.5
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 1.0e-112 410.6 309 74.1
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 6.6e-112 407.9 309 72.8
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 7.3e-111 404.4 309 72.5
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 2.7e-105 386.0 312 68.6
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 4.6e-105 385.2 308 67.9
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 6.6e-104 381.3 261 78.5
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 5.6e-103 378.3 313 68.1
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 1.2e-100 370.5 320 64.7
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 2.2e-99 366.3 320 64.1
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 1.6e-97 360.1 313 62.6
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 2.1e-97 359.8 304 64.5
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 3.9e-96 355.5 319 62.1
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 5.1e-96 355.1 318 62.3
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 5.6e-95 351.7 278 66.9
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 1.2e-94 350.5 303 62.7
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 6.2e-94 348.2 301 62.8
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 1.1e-93 347.4 317 60.9
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 5.2e-93 345.1 328 57.9
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 1.2e-92 344.0 299 63.2
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.0e-92 343.2 307 61.9
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 3.4e-92 342.4 313 65.5
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 3.7e-91 339.0 319 58.3
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 6.4e-91 338.2 305 61.6
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 8.3e-91 337.8 305 61.0
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 1.4e-90 337.0 310 61.6
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 1.9e-90 336.7 311 60.1
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 1.9e-90 336.7 319 57.7
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 2.4e-90 336.3 310 59.7
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 5.4e-90 335.1 319 58.6
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 9.2e-90 334.3 262 66.4
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 9.2e-90 334.3 262 66.4
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 2.1e-89 333.2 261 66.3
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 3.5e-89 332.4 319 57.1
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 4.6e-89 332.0 310 58.1
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 7.8e-89 331.3 314 58.6
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 1.0e-88 330.9 259 68.3
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 1.7e-88 330.1 312 57.7
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 1.7e-88 330.1 312 56.7
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 1.1e-87 327.4 291 60.1
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 2.5e-87 326.2 256 65.2
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 5.6e-87 325.1 303 58.1
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 1.6e-86 323.6 261 65.9
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 2.8e-86 322.8 307 58.0
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 4.7e-86 322.0 265 65.7
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 8.1e-86 321.2 301 58.8
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 1.2e-84 317.4 319 56.1
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 1.5e-84 317.0 247 66.4
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 2.6e-84 316.2 243 67.5
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 3.4e-84 315.8 253 64.0
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 2.2e-83 313.2 286 57.7
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 2.9e-83 312.8 301 56.1
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 1.9e-82 310.1 260 63.5
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 1.2e-81 307.4 285 58.9
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 1.6e-81 307.0 290 55.2
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 4.6e-81 305.4 273 59.7
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 4.6e-81 305.4 322 55.0
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 6.0e-81 305.1 263 61.2
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 6.0e-81 305.1 305 56.7
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 2.3e-80 303.1 259 61.0
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 5.1e-80 302.0 308 53.9
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 6.6e-80 301.6 279 58.8
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 8.7e-80 301.2 279 58.1
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 1.1e-79 300.8 263 60.5
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 1.9e-79 300.1 310 55.8
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 1.9e-79 300.1 310 55.8
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 3.3e-79 299.3 293 57.0
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 5.6e-79 298.5 261 61.3
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 9.6e-79 297.7 264 60.2
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 2.1e-78 296.6 273 58.6
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 6.2e-78 295.0 302 54.6
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 1.1e-77 294.3 249 63.1
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 1.4e-77 293.9 312 53.5
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 5.3e-77 292.0 291 54.0
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 1.5e-76 290.4 257 56.8
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 9.9e-76 287.7 295 53.2
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 8.4e-75 284.6 261 55.6
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 1.1e-74 284.3 261 55.2
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 1.4e-74 283.9 261 55.2
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.4e-74 283.9 236 62.7
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 2.4e-74 283.1 262 57.3
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 4.2e-74 282.3 293 52.6
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 5.4e-74 282.0 274 56.6
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 7.1e-74 281.6 306 50.7
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 1.6e-73 280.4 290 53.8
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 2.7e-73 279.6 295 51.2
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 3.5e-73 279.3 312 52.2
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 7.8e-73 278.1 295 51.2
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 2.8e-70 269.6 238 57.6
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 5.3e-69 265.4 201 69.7
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.5e-68 263.8 199 71.4
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 6.7e-64 248.4 238 55.5
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 1.6e-62 243.8 235 54.9
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 3.7e-62 242.7 235 55.3
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 3.2e-58 229.6 314 42.7
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 9.3e-58 228.0 137 87.6
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 4.6e-57 225.7 230 53.9
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 2.3e-56 223.4 203 61.1
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 5.6e-55 218.8 249 45.4
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 9.6e-55 218.0 234 50.4
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 4.8e-54 215.7 182 59.9
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 1.1e-53 214.5 235 48.1
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 6.9e-53 211.8 184 60.3
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 1.1e-50 204.5 142 73.2
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 4.6e-49 199.1 172 60.5
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 7.9e-49 198.4 159 67.9
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 3.4e-44 183.0 142 64.1
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 1.1e-37 161.4 239 44.8
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 4.5e-36 156.0 215 39.5
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 2.2e-35 153.7 198 47.5
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 8.8e-32 141.7 230 37.0
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 5.9e-28 129.0 225 34.7
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 1.4e-24 117.9 144 47.9
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.1e-23 114.8 82 74.4
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 7.4e-23 112.1 80 72.5
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.4e-21 107.8 82 69.5
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 3.5e-20 103.2 96 57.3
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.9e-18 97.4 105 52.4
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 8.3e-14 82.0 98 43.9
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 2.0e-12 77.4 60 61.7
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 2.0e-07 60.8 46 63.0
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 7.5e-07 58.9 124 35.5


User provided reference genes

Program Settings