Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G207400 Glycine max HOM05D008368 ORTHO05D010489 5.6e-30 133.7 69 100.0
Phvul.006G152200 Phaseolus vulgaris HOM05D008368 ORTHO05D010489 2.4e-25 118.2 69 91.3
arahy.Tifrunner.gnm1.ann1.121ATL Arachis hypogaea HOM05D008368 ORTHO05D010489 3.8e-18 94.4 68 75.0
arahy.Tifrunner.gnm1.ann1.IPV0IY Arachis hypogaea HOM05D008368 ORTHO05D010489 3.8e-18 94.4 68 75.0
VMungo0540G0881 Vigna mungo HOM05D008368 ORTHO05D010489 9.3e-17 89.7 55 89.1
Medtr2g022540 Medicago truncatula HOM05D008368 ORTHO05D010489 8.7e-15 83.2 76 65.8
Ca_00633_v3 Cicer arietinum L. HOM05D008368 ORTHO05D010489 2.8e-13 78.2 45 86.7
TPR.G30686 Trifolium pratense HOM05D008368 ORTHO05D010489 1.1e-12 76.3 79 57.0
Ca_00655_v3 Cicer arietinum L. HOM05D008368 ORTHO05D010489 1.8e-12 75.5 45 84.4
TPR.G40572 Trifolium pratense HOM05D008368 ORTHO05D010489 1.2e-11 72.8 71 63.4
Psat1g182840 Pisum sativum HOM05D008368 ORTHO05D010489 1.5e-11 72.4 78 57.7
TPR.G40393 Trifolium pratense HOM05D008368 ORTHO05D010489 5.8e-11 70.5 84 52.4
CiPaw.01G161200 Carya illinoinensis HOM05D008368 ORTHO05D010489 8.4e-10 66.6 46 73.9
Sed0011273 Sechium edule HOM05D008368 ORTHO05D010489 5.4e-09 63.9 46 63.0
Cc03_g03240 Coffea canephora HOM05D008368 ORTHO05D010489 7.1e-09 63.5 36 77.8
MELO3C006556.2 Cucumis melo HOM05D008368 ORTHO05D010489 9.3e-09 63.2 56 57.1
AUR62038186 Chenopodium quinoa HOM05D008368 ORTHO05D010489 2.7e-08 61.6 65 53.8
CsaV3_3G013620 Cucumis sativus L. HOM05D008368 ORTHO05D010489 2.7e-08 61.6 46 65.2
Actinidia08510 Actinidia chinensis HOM05D008368 ORTHO05D010489 3.5e-08 61.2 53 56.6
unitig_32.g10803 Utricularia gibba HOM05D008368 ORTHO05D010489 3.5e-08 61.2 39 66.7
ClCG05G005370 Citrullus lanatus HOM05D008368 ORTHO05D010489 4.6e-08 60.8 46 65.2
Sc13g0004110 Simmondsia chinensis HOM05D008368 ORTHO05D010489 4.6e-08 60.8 52 57.7
TPR.G30669 Trifolium pratense HOM05D008368 ORTHO05D010489 4.6e-08 60.8 69 55.1
Potri.008G203800 Populus trichocarpa HOM05D008368 ORTHO05D010489 6.0e-08 60.5 34 82.4
Prupe.1G152900 Prunus persica HOM05D008368 ORTHO05D010489 6.0e-08 60.5 44 65.9
AUR62038060 Chenopodium quinoa HOM05D008368 ORTHO05D010489 7.9e-08 60.1 64 51.6
Lsat_1_v5_gn_7_68141 Lactuca sativa HOM05D008368 ORTHO05D010489 1.0e-07 59.7 42 66.7
Zm00001eb353800 Zea mays HOM05D038576 ORTHO05D010489 1.0e-07 59.7 38 68.4
DCAR_002404 Daucus carota HOM05D008368 ORTHO05D010489 1.3e-07 59.3 51 58.8
MD13G1185300 Malus domestica HOM05D008368 ORTHO05D010489 1.8e-07 58.9 44 63.6
THA.LOC104818801 Tarenaya hassleriana HOM05D008368 ORTHO05D010489 1.8e-07 58.9 46 56.5
Aa31LG11G10480 Aethionema arabicum HOM05D008368 ORTHO05D010489 3.0e-07 58.2 46 54.3
EL10Ac3g06405 Beta vulgaris HOM05D008368 ORTHO05D010489 3.0e-07 58.2 34 76.5
EL10Ac3g06406 Beta vulgaris HOM05D008368 ORTHO05D010489 3.0e-07 58.2 34 76.5
Sopen01g031610 Solanum pennellii HOM05D008368 ORTHO05D010489 3.0e-07 58.2 59 52.5
SalBow2G2001 Salvia bowleyana HOM05D008368 ORTHO05D010489 3.9e-07 57.8 59 50.8
CSS0036726 Camellia sinensis var. sinensis HOM05D008368 ORTHO05D010489 5.1e-07 57.4 58 50.0
FvH4_4g14770 Fragaria vesca HOM05D008368 ORTHO05D010489 5.1e-07 57.4 33 75.8
FAN07G1534 Fragaria x ananassa HOM05D008368 ORTHO05D010489 5.1e-07 57.4 59 52.5
FAN17G1872 Fragaria x ananassa HOM05D008368 ORTHO05D010489 5.1e-07 57.4 33 75.8
Os05g0532800 Oryza sativa ssp. japonica HOM05D038576 ORTHO05D010489 8.7e-07 56.6 37 67.6
AL6G30580 Arabidopsis lyrata HOM05D008368 ORTHO05D010489 1.5e-06 55.8 47 53.2
Thhalv10016117m.g Eutrema salsugineum HOM05D008368 ORTHO05D010489 1.5e-06 55.8 47 53.2
Thecc.04G224200 Theobroma cacao HOM05D008368 ORTHO05D010489 1.5e-06 55.8 60 48.3
BcaB05g23374 Brassica carinata HOM05D008368 ORTHO05D010489 1.9e-06 55.5 43 55.8
BraA02t05486Z Brassica rapa HOM05D008368 ORTHO05D010489 2.5e-06 55.1 54 46.3
Migut.G00302 Erythranthe guttata HOM05D008368 ORTHO05D010489 2.5e-06 55.1 55 50.9
FAN22G0200 Fragaria x ananassa HOM05D008368 ORTHO05D010489 2.5e-06 55.1 33 69.7
AT5G19151 Arabidopsis thaliana HOM05D008368 ORTHO05D010489 3.3e-06 54.7 40 60.0
BcaC03g13647 Brassica carinata HOM05D008368 ORTHO05D010489 4.3e-06 54.3 54 46.3
A02p05280 Brassica napus HOM05D008368 ORTHO05D010489 4.3e-06 54.3 54 46.3
C02p10400 Brassica napus HOM05D008368 ORTHO05D010489 4.3e-06 54.3 54 46.3
BolC2t06941H Brassica oleracea HOM05D008368 ORTHO05D010489 4.3e-06 54.3 54 46.3
Carub.0006s1749 Capsella rubella HOM05D008368 ORTHO05D010489 5.6e-06 53.9 48 54.2
CARHR193790 Cardamine hirsuta HOM05D008368 ORTHO05D010489 5.6e-06 53.9 32 68.8
RcHm_v2.0_Chr0c32g0501461 Rosa chinensis HOM05D008368 ORTHO05D010489 5.6e-06 53.9 48 58.3
RcHm_v2.0_Chr0c32g0501651 Rosa chinensis HOM05D008368 ORTHO05D010489 5.6e-06 53.9 48 58.3
Ah.13g074090 Amaranthus hybridus HOM05D008368 ORTHO05D010489 7.4e-06 53.5 58 48.3


User provided reference genes

Program Settings