Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 0.0e+00 2662.1 1407 100.0
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 0.0e+00 2452.2 1409 93.0
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 0.0e+00 2124.0 1416 83.5
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 0.0e+00 2086.6 1411 82.3
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 0.0e+00 2059.3 1448 79.3
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 0.0e+00 1713.4 1440 68.5
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 0.0e+00 1701.0 1413 69.1
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 0.0e+00 1696.4 1366 70.2
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 0.0e+00 1639.4 1418 68.7
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 0.0e+00 1622.1 1404 67.7
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 0.0e+00 1601.3 1403 68.0
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 0.0e+00 1531.9 1261 69.8
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 0.0e+00 1495.3 1259 68.5
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 0.0e+00 1475.7 1378 63.5
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 1185.6 1486 50.6
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 1184.5 1486 50.6
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 0.0e+00 1119.4 1506 50.1
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 0.0e+00 1105.9 1549 48.5
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 0.0e+00 1087.0 1510 47.8
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 1.1e-305 1053.9 1502 48.1
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 4.7e-301 1038.5 1462 47.6
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.4e-300 1036.9 1416 47.9
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 4.9e-298 1028.5 1462 47.4
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 2.4e-297 1026.2 1462 47.3
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 4.7e-293 1011.9 1442 47.5
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 6.2e-293 1011.5 1489 47.7
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 1.4e-289 1000.3 1521 45.3
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 1.9e-289 1000.0 1483 47.0
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 7.1e-289 998.0 1420 47.7
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 7.1e-289 998.0 1472 47.4
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 4.6e-288 995.3 1495 46.8
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 3.9e-287 992.3 1429 46.6
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 9.6e-286 987.6 1456 45.3
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 9.9e-275 951.0 1452 45.2
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 4.9e-274 948.7 1445 46.2
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 7.9e-272 941.4 1455 45.9
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 7.9e-272 941.4 1452 45.7
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 8.7e-271 937.9 1425 45.8
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 7.4e-270 934.9 1452 45.1
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.2e-267 927.5 1358 46.4
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.5e-267 927.2 1474 45.0
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 3.4e-259 899.4 1321 45.4
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 9.3e-257 891.3 1357 45.0
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.5e-254 884.0 1453 43.7
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 2.5e-254 883.2 1430 42.8
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 3.3e-254 882.9 1333 43.9
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 9.7e-254 881.3 1283 45.8
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 5.3e-252 875.5 1291 46.2
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 1.5e-246 857.4 1442 43.2
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 1.2e-235 821.2 1205 45.9
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 2.6e-235 820.1 1181 47.1
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 2.2e-234 817.0 1199 47.0
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 1.2e-227 794.7 1310 42.9
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 1.6e-227 794.3 1442 41.1
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 4.5e-227 792.7 1441 41.4
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 7.7e-227 792.0 1176 46.4
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 1.5e-225 787.7 1434 40.7
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.8e-223 780.8 984 49.1
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 1.6e-219 767.7 1290 43.1
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 3.2e-217 760.0 1456 40.4
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 1.8e-212 744.2 1473 38.9
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 9.1e-212 741.9 1474 38.9
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 8.6e-210 735.3 1336 40.8
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 1.9e-209 734.2 1296 41.7
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 5.6e-209 732.6 1307 41.6
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 1.2e-208 731.5 1386 41.4
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.7e-205 721.1 1302 41.8
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 3.7e-205 719.9 1487 38.9
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 4.9e-205 719.5 1352 41.9
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.5e-201 708.0 1345 40.6
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 3.4e-198 696.8 1322 39.8
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 3.2e-196 690.3 1250 41.6
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 2.6e-190 670.6 622 62.2
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 5.8e-190 669.5 1292 41.0
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.0e-186 658.7 1423 37.5
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 1.0e-186 658.7 1333 39.5
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 6.6e-186 656.0 1321 39.7
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 1.6e-176 624.8 1343 38.0
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 3.4e-174 617.1 1396 36.0
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 7.6e-174 615.9 1220 39.8
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 1.1e-172 612.1 1313 38.8
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.2e-172 610.5 1200 39.2
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 5.4e-172 609.8 1237 39.4
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 1.2e-166 592.0 1486 34.5
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 7.6e-166 589.3 1303 37.8
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 1.9e-164 584.7 1375 37.0
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 7.9e-163 579.3 1256 37.7
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 1.3e-162 578.6 1419 35.3
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 2.8e-160 570.9 1298 36.8
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 2.4e-159 567.8 1314 36.6
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 2.0e-158 564.7 1354 37.1
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 5.8e-158 563.1 1154 38.6
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 1.9e-156 558.1 1222 37.4
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 3.2e-156 557.4 1222 37.4
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 2.7e-155 554.3 1233 37.5
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 2.7e-155 554.3 1233 37.5
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 1.5e-153 548.5 1119 38.2
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 4.2e-148 530.4 1042 37.6
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.9e-137 495.0 847 40.9
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 2.5e-137 494.6 1226 35.1
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 4.8e-136 490.3 664 46.7
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 6.9e-135 486.5 658 49.5
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 8.5e-133 479.6 600 49.3
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 4.1e-119 434.1 923 37.1
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 2.4e-111 408.3 621 46.5
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 1.2e-110 406.0 804 37.6
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.1e-108 399.4 1240 33.0
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 1.3e-104 386.0 794 37.2
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 2.2e-96 358.6 515 45.0
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 2.8e-91 341.7 505 45.5
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 4.7e-91 340.9 650 40.8
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 8.9e-90 336.7 551 42.8
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 1.7e-88 332.4 483 44.5
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 1.4e-87 329.3 459 44.4
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 1.6e-78 299.3 319 54.5
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 7.8e-78 297.0 763 33.4
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 1.1e-68 266.5 417 46.8
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 1.2e-67 263.1 564 36.5
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 1.5e-65 256.1 285 53.0
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 1.8e-50 206.1 673 30.9
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 5.3e-50 204.5 533 33.2
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 3.4e-49 201.8 523 33.1
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 6.4e-48 197.6 600 32.3
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 2.4e-47 195.7 550 28.7
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 3.0e-45 188.7 726 28.9
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 8.7e-45 187.2 153 58.2
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 2.5e-44 185.7 360 36.7
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.9e-39 169.5 307 48.5
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 1.3e-37 163.3 232 44.0
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 5.1e-37 161.4 253 39.9
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 1.1e-36 160.2 502 31.5
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 1.9e-36 159.5 476 31.5
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 2.4e-34 152.5 386 34.7
MD05G1347200 Malus domestica HOM05D002890 ORTHO05D005855 2.0e-33 149.4 320 37.5
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 2.5e-31 142.5 263 46.0
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.3e-29 136.0 245 38.8
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.0e-21 110.5 517 30.0
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 1.7e-19 103.2 435 25.7
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.1e-18 99.0 124 47.6
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 3.9e-13 82.0 81 51.9
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.7e-13 81.3 185 33.0
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 8.8e-13 80.9 109 58.7
BcaB01g03945 Brassica carinata HOM05D002890 ORTHO05D005855 6.5e-08 64.7 61 59.0
BcaC01g05871 Brassica carinata HOM05D002890 ORTHO05D005855 6.5e-08 64.7 61 59.0
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 6.5e-08 64.7 130 40.0
RcHm_v2.0_Chr5g0003041 Rosa chinensis HOM05D002890 ORTHO05D005855 9.4e-07 60.8 81 43.2
RcHm_v2.0_Chr5g0003151 Rosa chinensis HOM05D002890 ORTHO05D005855 2.7e-06 59.3 81 42.0


User provided reference genes

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