Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 9.2e-109 397.1 233 100.0
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 3.3e-66 255.8 243 67.5
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 1.3e-65 253.8 236 65.7
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 2.3e-59 233.0 270 59.6
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 5.6e-58 228.4 265 60.0
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 2.1e-57 226.5 233 60.1
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 1.2e-55 220.7 243 58.8
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.9e-53 213.4 211 61.6
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 7.1e-53 211.5 211 61.1
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 1.2e-52 210.7 211 65.9
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 6.0e-52 208.4 211 60.7
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 1.3e-51 207.2 176 65.9
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 1.1e-50 204.1 213 59.6
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 2.5e-50 203.0 173 66.5
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 1.3e-49 200.7 201 60.7
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 8.2e-49 198.0 150 70.7
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 8.2e-49 198.0 179 65.9
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 1.1e-48 197.6 178 63.5
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 6.9e-48 194.9 145 73.1
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 6.9e-48 194.9 150 70.0
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 9.0e-48 194.5 182 62.1
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 9.0e-48 194.5 182 60.4
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 1.2e-47 194.1 219 55.7
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 1.5e-47 193.7 182 63.2
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 2.0e-47 193.4 173 64.2
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 2.0e-47 193.4 213 55.4
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 3.4e-47 192.6 214 56.5
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 4.5e-47 192.2 182 62.1
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 7.6e-47 191.4 275 51.6
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 1.0e-46 191.0 198 60.1
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 2.9e-46 189.5 215 55.3
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 2.9e-46 189.5 215 55.3
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 2.9e-46 189.5 150 68.7
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 4.9e-46 188.7 144 68.8
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 4.9e-46 188.7 209 53.6
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 6.5e-46 188.3 195 54.9
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 6.5e-46 188.3 144 70.1
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 8.4e-46 188.0 220 52.3
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 1.9e-45 186.8 202 56.9
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 1.9e-45 186.8 185 60.0
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 1.9e-45 186.8 144 68.8
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 4.2e-45 185.7 218 52.3
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 1.2e-44 184.1 195 63.1
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 1.6e-44 183.7 168 61.3
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 2.1e-44 183.3 224 50.9
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 2.1e-44 183.3 152 65.8
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 3.5e-44 182.6 238 50.4
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 4.6e-44 182.2 198 63.1
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 4.6e-44 182.2 152 65.1
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 6.0e-44 181.8 141 69.5
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 6.0e-44 181.8 217 52.1
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 1.3e-43 180.6 178 59.6
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 1.3e-43 180.6 215 52.1
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 5.1e-43 178.7 200 53.0
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 8.7e-43 177.9 203 54.7
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 1.1e-42 177.6 210 56.2
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.1e-42 177.6 123 74.0
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 2.5e-42 176.4 146 66.4
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 2.5e-42 176.4 203 54.2
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 3.3e-42 176.0 139 69.1
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 1.3e-41 174.1 136 69.9
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 8.2e-41 171.4 141 65.2
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 1.4e-40 170.6 143 65.7
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 1.8e-40 170.2 136 68.4
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 2.4e-40 169.9 126 71.4
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 3.1e-40 169.5 136 66.9
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 4.1e-40 169.1 145 64.1
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 5.3e-40 168.7 232 49.6
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 5.3e-40 168.7 232 49.6
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 5.3e-40 168.7 232 49.6
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 9.0e-40 167.9 164 62.2
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 1.2e-39 167.5 141 64.5
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 1.2e-39 167.5 141 64.5
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 1.5e-39 167.2 207 51.2
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 2.6e-39 166.4 218 50.5
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 3.4e-39 166.0 222 45.0
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 5.9e-39 165.2 165 59.4
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 1.0e-38 164.5 222 48.6
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 2.9e-38 162.9 139 64.0
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 3.8e-38 162.5 257 47.5
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 5.0e-38 162.2 227 47.1
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 2.5e-37 159.8 143 60.1
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 3.2e-37 159.5 142 64.8
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 2.1e-36 156.8 233 49.4
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 2.1e-36 156.8 144 61.1
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 3.6e-36 156.0 179 54.7
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 6.1e-36 155.2 249 46.2
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 7.9e-36 154.8 161 54.7
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 7.9e-36 154.8 233 48.5
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 1.0e-35 154.5 164 53.7
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 5.7e-34 148.7 117 70.9
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 1.7e-33 147.1 117 70.1
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 1.1e-32 144.4 151 55.0
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 1.4e-32 144.1 117 69.2
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 4.5e-31 139.0 117 68.4
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 1.3e-30 137.5 136 56.6
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 8.5e-30 134.8 176 47.7
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 2.3e-27 126.7 120 61.7
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 2.3e-27 126.7 116 61.2
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 5.7e-26 122.1 111 63.1
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 6.9e-24 115.2 146 47.3
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 2.6e-23 113.2 227 37.9
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 2.2e-22 110.2 131 55.0
AL7G43500 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 4.4e-18 95.9 77 63.6
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 4.4e-18 95.9 67 73.1
TPR.G17515 Trifolium pratense HOM05D007026 ORTHO05D008493 2.8e-17 93.2 249 36.9
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 4.5e-15 85.9 112 42.9
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 1.7e-14 84.0 135 42.2
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 4.7e-12 75.9 86 57.0
TPR.G28471 Trifolium pratense HOM05D007026 ORTHO05D008493 6.1e-12 75.5 153 49.0
SMO147G0317 Selaginella moellendorffii HOM05D007026 ORTHO05D008493 8.0e-12 75.1 135 35.6
Mapoly0153s0019 Marchantia polymorpha HOM05D007026 ORTHO05D008493 7.5e-10 68.6 123 36.6
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 1.7e-06 57.4 54 50.0
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 2.2e-06 57.0 47 72.3
Aqoxy1G00218 Aquilegia oxysepala HOM05D000196 ORTHO05D000279 2.9e-06 56.6 132 31.1


User provided reference genes

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