Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G201100 Glycine max HOM05D006691 ORTHO05D007620 4.2e-44 181.0 94 100.0
Phvul.011G210100 Phaseolus vulgaris HOM05D006691 ORTHO05D007620 2.5e-33 145.2 94 83.0
Glyma.12G235600 Glycine max HOM05D006691 ORTHO05D007620 1.5e-30 136.0 69 95.7
Medtr8g037800 Medicago truncatula HOM05D006691 ORTHO05D007620 7.1e-28 127.1 90 75.6
TPR.G1848 Trifolium pratense HOM05D006691 ORTHO05D007620 3.5e-27 124.8 90 73.3
Lalb_Chr01g0007961 Lupinus albus HOM05D006691 ORTHO05D007620 4.6e-27 124.4 91 73.6
MD05G1061400 Malus domestica HOM05D006691 ORTHO05D007620 1.1e-23 113.2 90 65.6
Lj1g0004010 Lotus japonicus HOM05D006691 ORTHO05D007620 1.2e-22 109.8 91 68.1
Psat4g192840 Pisum sativum HOM05D006691 ORTHO05D007620 1.5e-22 109.4 90 68.9
Lj3g0013236 Lotus japonicus HOM05D006691 ORTHO05D007620 5.8e-22 107.5 92 71.7
MD10G1069300 Malus domestica HOM05D006691 ORTHO05D007620 5.8e-22 107.5 90 63.3
Nitab4.5_0003234g0120 Nicotiana tabacum HOM05D006691 ORTHO05D007620 2.2e-21 105.5 95 65.3
Prupe.8G091200 Prunus persica HOM05D006691 ORTHO05D007620 2.2e-21 105.5 90 61.1
Ciclev10030122m.g Citrus clementina HOM05D006691 ORTHO05D007620 3.8e-21 104.8 91 64.8
Dinv23490 Davidia involucrata HOM05D006691 ORTHO05D007620 1.1e-20 103.2 92 65.2
QL11p045203 Quercus lobata HOM05D006691 ORTHO05D007620 1.9e-20 102.4 91 61.5
Potri.009G119900 Populus trichocarpa HOM05D006691 ORTHO05D007620 2.5e-20 102.1 94 62.8
Dinv42040 Davidia involucrata HOM05D006691 ORTHO05D007620 3.2e-20 101.7 92 63.0
Nitab4.5_0007454g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 5.5e-20 100.9 95 62.1
RcHm_v2.0_Chr6g0265861 Rosa chinensis HOM05D006691 ORTHO05D007620 7.1e-20 100.5 92 63.0
Peaxi162Scf00016g00429 Petunia axillaris HOM05D006691 ORTHO05D007620 1.6e-19 99.4 98 62.2
TWI31G1476 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 2.7e-19 98.6 91 62.6
TAR628G0615 Trochodendron aralioides HOM05D006691 ORTHO05D007620 3.5e-19 98.2 91 60.4
Nitab4.5_0013456g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 1.0e-18 96.7 96 61.5
FAN20G2766 Fragaria x ananassa HOM05D006691 ORTHO05D007620 1.8e-18 95.9 92 60.9
FAN27G2049 Fragaria x ananassa HOM05D006691 ORTHO05D007620 1.8e-18 95.9 92 62.0
arahy.Tifrunner.gnm1.ann1.43WB82 Arachis hypogaea HOM05D006691 ORTHO05D007620 2.3e-18 95.5 92 63.0
GSVIVG01023821001 Vitis vinifera HOM05D006691 ORTHO05D007620 2.3e-18 95.5 94 59.6
Sopen01g052090 Solanum pennellii HOM05D006691 ORTHO05D007620 3.9e-18 94.7 95 58.9
Manes.11G091700 Manihot esculenta HOM05D006691 ORTHO05D007620 5.1e-18 94.4 95 57.9
Nitab4.5_0001413g0050 Nicotiana tabacum HOM05D006691 ORTHO05D007620 5.1e-18 94.4 97 59.8
TWI79G1416 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 5.1e-18 94.4 91 58.2
FAN15G0999 Fragaria x ananassa HOM05D006691 ORTHO05D007620 6.7e-18 94.0 92 60.9
FvH4_2g09570 Fragaria vesca HOM05D006691 ORTHO05D007620 8.7e-18 93.6 92 60.9
FAN24G2625 Fragaria x ananassa HOM05D006691 ORTHO05D007620 8.7e-18 93.6 92 60.9
CAN.G1544.5 Capsicum annuum HOM05D006691 ORTHO05D007620 1.1e-17 93.2 94 60.6
Cc00_g15110 Coffea canephora HOM05D006691 ORTHO05D007620 1.1e-17 93.2 95 58.9
Solyc01g109895.1 Solanum lycopersicum HOM05D006691 ORTHO05D007620 2.5e-17 92.0 95 56.8
PGSC0003DMG400030948 Solanum tuberosum HOM05D006691 ORTHO05D007620 2.5e-17 92.0 95 56.8
Actinidia00546 Actinidia chinensis HOM05D006691 ORTHO05D007620 3.3e-17 91.7 91 59.3
COL.COLO4_25981 Corchorus olitorius HOM05D006691 ORTHO05D007620 3.3e-17 91.7 96 58.3
CiPaw.06G132900 Carya illinoinensis HOM05D006691 ORTHO05D007620 5.7e-17 90.9 92 57.6
CANSAT11G0932 Cannabis sativa HOM05D006691 ORTHO05D007620 1.3e-16 89.7 91 53.8
Manes.04G087299 Manihot esculenta HOM05D006691 ORTHO05D007620 1.3e-16 89.7 93 57.0
Duzib248G1522 Durio zibethinus HOM05D006691 ORTHO05D007620 8.2e-16 87.0 91 60.4
Gorai.005G245800 Gossypium raimondii HOM05D006691 ORTHO05D007620 8.2e-16 87.0 90 58.9
Hma1.2p1_0066F.1_g036140 Hydrangea macrophylla HOM05D006691 ORTHO05D007620 8.2e-16 87.0 92 56.5
Eucgr.I01291 Eucalyptus grandis HOM05D006691 ORTHO05D007620 1.4e-15 86.3 94 52.1
Thecc.02G080700 Theobroma cacao HOM05D006691 ORTHO05D007620 1.8e-15 85.9 91 57.1
Gohir.A03G196700 Gossypium hirsutum HOM05D006691 ORTHO05D007620 4.1e-15 84.7 88 58.0
Gohir.D02G217900 Gossypium hirsutum HOM05D006691 ORTHO05D007620 4.1e-15 84.7 90 57.8
SalBow6G5689 Salvia bowleyana HOM05D006691 ORTHO05D007620 5.3e-15 84.3 87 49.4
Gorai.013G035000 Gossypium raimondii HOM05D006691 ORTHO05D007620 1.2e-14 83.2 90 52.2
Gohir.D13G030800 Gossypium hirsutum HOM05D006691 ORTHO05D007620 3.4e-14 81.6 90 51.1
Aqoxy5G01556 Aquilegia oxysepala HOM05D006691 ORTHO05D007620 5.9e-14 80.9 90 52.2
arahy.Tifrunner.gnm1.ann1.D742FH Arachis hypogaea HOM05D006691 ORTHO05D007620 1.3e-13 79.7 47 76.6
Gohir.A13G032600 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.3e-13 79.7 90 51.1
CSS0036321 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 1.7e-13 79.3 95 52.6
Migut.B00211 Erythranthe guttata HOM05D006691 ORTHO05D007620 1.7e-13 79.3 90 48.9
Duzib132G0715 Durio zibethinus HOM05D006691 ORTHO05D007620 2.2e-13 79.0 92 54.3
Rhsim05G0071400 Rhododendron simsii HOM05D006691 ORTHO05D007620 3.8e-13 78.2 91 52.7
arahy.Tifrunner.gnm1.ann1.GKZX65 Arachis hypogaea HOM05D006691 ORTHO05D007620 1.1e-12 76.6 99 49.5
PSO675G5127 Papaver somniferum HOM05D006691 ORTHO05D007620 1.1e-12 76.6 102 55.9
Sed0023451 Sechium edule HOM05D006691 ORTHO05D007620 1.1e-12 76.6 97 51.5
PSO591G0314 Papaver somniferum HOM05D006691 ORTHO05D007620 2.5e-12 75.5 98 58.2
CSS0048821 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 3.2e-12 75.1 98 51.0
Hund06253 Selenicereus undatus HOM05D006691 ORTHO05D007620 4.2e-12 74.7 90 45.6
HanXRQChr04g0127791 Helianthus annuus HOM05D006691 ORTHO05D007620 5.5e-12 74.3 88 53.4
CiPaw.05G069300 Carya illinoinensis HOM05D006691 ORTHO05D007620 9.4e-12 73.6 61 59.0
CiPaw.05G069400 Carya illinoinensis HOM05D006691 ORTHO05D007620 9.4e-12 73.6 57 63.2
MBI16_g36843_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 9.4e-12 73.6 88 47.7
Peaxi162Scf00684g00234 Petunia axillaris HOM05D006691 ORTHO05D007620 1.6e-11 72.8 94 54.3
THA.LOC104819621 Tarenaya hassleriana HOM05D006691 ORTHO05D007620 2.1e-11 72.4 89 49.4
arahy.Tifrunner.gnm1.ann1.JP7MPK Arachis hypogaea HOM05D006691 ORTHO05D007620 3.6e-11 71.6 99 47.5
Glyma.06G010000 Glycine max HOM05D006691 ORTHO05D007620 3.6e-11 71.6 88 52.3
CiPaw.05G069100 Carya illinoinensis HOM05D006691 ORTHO05D007620 7.9e-11 70.5 61 57.4
MELO3C023320.2 Cucumis melo HOM05D006691 ORTHO05D007620 1.4e-10 69.7 97 47.4
CsaV3_2G015000 Cucumis sativus L. HOM05D006691 ORTHO05D007620 1.8e-10 69.3 93 51.6
PGR042G3893 Punica granatum HOM05D006691 ORTHO05D007620 1.8e-10 69.3 89 51.7
CSS0004191 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 2.3e-10 68.9 91 48.4
Eucgr.G01694 Eucalyptus grandis HOM05D006691 ORTHO05D007620 8.8e-10 67.0 104 42.3
HanXRQChr16g0505401 Helianthus annuus HOM05D006691 ORTHO05D007620 1.1e-09 66.6 93 47.3
Lsat_1_v5_gn_7_91560 Lactuca sativa HOM05D006691 ORTHO05D007620 1.1e-09 66.6 88 51.1
ClCG11G004170 Citrullus lanatus HOM05D006691 ORTHO05D007620 1.5e-09 66.2 33 87.9
AT2G16385 Arabidopsis thaliana HOM05D006691 ORTHO05D007620 2.0e-09 65.9 90 48.9
Glyma.08G235100 Glycine max HOM05D006691 ORTHO05D007620 2.0e-09 65.9 88 48.9
ATR0585G050 Amborella trichopoda HOM05D006691 ORTHO05D007620 3.3e-09 65.1 94 42.6
Carub.0007s0568 Capsella rubella HOM05D006691 ORTHO05D007620 4.3e-09 64.7 94 45.7
DCAR_001560 Daucus carota HOM05D006691 ORTHO05D007620 1.3e-08 63.2 92 43.5
Lalb_Chr03g0032901 Lupinus albus HOM05D006691 ORTHO05D007620 1.3e-08 63.2 40 67.5
A01p03880 Brassica napus HOM05D006691 ORTHO05D007620 1.7e-08 62.8 96 45.8
CARHR242800 Cardamine hirsuta HOM05D006691 ORTHO05D007620 1.7e-08 62.8 94 42.6
Thhalv10026702m.g Eutrema salsugineum HOM05D006691 ORTHO05D007620 1.7e-08 62.8 94 44.7
BcaNung00683 Brassica carinata HOM05D006691 ORTHO05D007620 2.2e-08 62.4 96 45.8
C01p04190 Brassica napus HOM05D006691 ORTHO05D007620 2.2e-08 62.4 96 45.8
BraA01t00375Z Brassica rapa HOM05D006691 ORTHO05D007620 2.2e-08 62.4 96 45.8
MBI10_g00752_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 2.2e-08 62.4 44 61.4
AL3G52540 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 3.7e-08 61.6 90 42.2
AL7G16600 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 1.1e-07 60.1 94 43.6
C07p60660 Brassica napus HOM05D006691 ORTHO05D007620 3.1e-07 58.5 94 40.4
BolC7t46496H Brassica oleracea HOM05D006691 ORTHO05D007620 3.1e-07 58.5 94 40.4
BcaNung04921 Brassica carinata HOM05D006691 ORTHO05D007620 4.1e-07 58.2 94 42.6
A03p63030 Brassica napus HOM05D006691 ORTHO05D007620 4.1e-07 58.2 94 40.4
BraA03t15377Z Brassica rapa HOM05D006691 ORTHO05D007620 4.1e-07 58.2 94 40.4
BcaB03g11823 Brassica carinata HOM05D006691 ORTHO05D007620 5.3e-07 57.8 94 41.5
Sc18g0005100 Simmondsia chinensis HOM05D006691 ORTHO05D007620 5.3e-07 57.8 90 41.1
Ah.01g019150 Amaranthus hybridus HOM05D001345 ORTHO05D001190 7.7e-06 53.9 56 55.4
DCAR_004781 Daucus carota HOM05D006691 ORTHO05D007620 7.7e-06 53.9 86 38.4


User provided reference genes

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