Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 4.6e-38 160.6 74 100.0
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 3.3e-36 154.5 74 97.3
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 3.3e-36 154.5 74 97.3
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 7.3e-36 153.3 74 95.9
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 9.6e-36 152.9 74 95.9
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 9.6e-36 152.9 74 95.9
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.6e-35 152.1 74 94.6
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 1.6e-35 152.1 72 97.2
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 1.6e-35 152.1 74 94.6
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 3.6e-35 151.0 74 93.2
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 3.6e-35 151.0 72 95.8
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 8.1e-35 149.8 74 93.2
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 8.1e-35 149.8 74 93.2
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 8.1e-35 149.8 74 93.2
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 1.1e-34 149.4 72 94.4
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.1e-34 149.4 72 94.4
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.1e-34 149.4 72 94.4
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.1e-34 149.4 72 94.4
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 1.1e-34 149.4 73 93.2
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 1.1e-34 149.4 73 93.2
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 1.1e-34 149.4 72 94.4
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 1.4e-34 149.1 74 91.9
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 1.4e-34 149.1 71 95.8
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 1.8e-34 148.7 74 91.9
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 1.8e-34 148.7 74 91.9
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 1.8e-34 148.7 74 91.9
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 1.8e-34 148.7 74 91.9
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 2.4e-34 148.3 74 91.9
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 2.4e-34 148.3 74 91.9
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 3.1e-34 147.9 71 95.8
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 4.0e-34 147.5 74 90.5
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 4.0e-34 147.5 74 90.5
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 4.0e-34 147.5 72 93.1
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 4.0e-34 147.5 74 91.9
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 4.0e-34 147.5 74 91.9
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 4.0e-34 147.5 74 90.5
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 4.0e-34 147.5 74 90.5
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 4.0e-34 147.5 74 90.5
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 4.0e-34 147.5 74 90.5
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 4.0e-34 147.5 74 91.9
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 4.0e-34 147.5 74 91.9
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 4.0e-34 147.5 72 93.1
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 4.0e-34 147.5 74 91.9
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 5.2e-34 147.1 74 90.5
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 5.2e-34 147.1 74 91.9
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 5.2e-34 147.1 74 91.9
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 6.8e-34 146.7 71 93.0
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 6.8e-34 146.7 73 91.8
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 6.8e-34 146.7 74 90.5
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 8.9e-34 146.4 74 89.2
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 8.9e-34 146.4 72 91.7
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 8.9e-34 146.4 74 90.5
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 8.9e-34 146.4 74 90.5
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 8.9e-34 146.4 74 89.2
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.2e-33 146.0 74 89.2
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 1.2e-33 146.0 74 89.2
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 1.2e-33 146.0 74 90.5
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 1.5e-33 145.6 71 93.0
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.5e-33 145.6 71 93.0
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.5e-33 145.6 71 93.0
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.5e-33 145.6 71 93.0
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 2.0e-33 145.2 74 86.5
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 2.0e-33 145.2 74 89.2
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 2.0e-33 145.2 74 86.5
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 2.0e-33 145.2 74 89.2
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 2.0e-33 145.2 74 89.2
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 2.0e-33 145.2 74 89.2
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.6e-33 144.8 74 89.2
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 3.4e-33 144.4 71 91.5
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 4.4e-33 144.1 74 89.2
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 4.4e-33 144.1 74 87.8
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 5.8e-33 143.7 74 87.8
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 5.8e-33 143.7 72 90.3
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 5.8e-33 143.7 74 87.8
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 7.6e-33 143.3 73 86.3
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 7.6e-33 143.3 74 87.8
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 7.6e-33 143.3 74 87.8
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 7.6e-33 143.3 74 87.8
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 7.6e-33 143.3 71 91.5
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 7.6e-33 143.3 72 88.9
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 7.6e-33 143.3 72 84.7
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 7.6e-33 143.3 72 88.9
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 9.9e-33 142.9 72 90.3
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 9.9e-33 142.9 71 91.5
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 9.9e-33 142.9 74 87.8
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 1.3e-32 142.5 72 88.9
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 1.3e-32 142.5 71 90.1
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.3e-32 142.5 74 83.8
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.3e-32 142.5 72 86.1
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 1.7e-32 142.1 74 86.5
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 1.7e-32 142.1 71 91.5
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.7e-32 142.1 71 90.1
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 2.2e-32 141.7 74 85.1
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 2.2e-32 141.7 74 85.1
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 2.2e-32 141.7 74 86.5
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 2.9e-32 141.4 74 82.4
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 3.8e-32 141.0 74 85.1
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 3.8e-32 141.0 74 83.8
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.8e-32 141.0 71 85.9
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 3.8e-32 141.0 73 87.7
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 4.9e-32 140.6 74 83.8
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 6.4e-32 140.2 71 91.5
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 6.4e-32 140.2 74 85.1
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 1.1e-31 139.4 72 86.1
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 1.4e-31 139.0 71 87.3
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 1.4e-31 139.0 71 84.5
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.9e-31 138.7 71 87.3
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 3.2e-31 137.9 74 82.4
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 4.2e-31 137.5 74 82.4
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 4.2e-31 137.5 74 82.4
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 4.2e-31 137.5 72 84.7
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 7.1e-31 136.7 74 81.1
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 1.2e-30 136.0 71 85.9
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 1.6e-30 135.6 71 85.9
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.7e-30 134.8 71 83.1
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 2.7e-30 134.8 71 85.9
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 3.5e-30 134.4 71 83.1
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 3.5e-30 134.4 71 83.1
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 3.5e-30 134.4 71 83.1
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 6.0e-30 133.7 71 83.1
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 6.0e-30 133.7 71 81.7
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 6.0e-30 133.7 71 83.1
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 7.8e-30 133.3 66 92.4
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 7.8e-30 133.3 71 83.1
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 4.3e-28 127.5 72 79.2
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.8e-27 124.8 73 75.3
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 1.1e-26 122.9 68 80.9
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 5.3e-26 120.6 68 79.4
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 5.3e-26 120.6 68 79.4
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 1.1e-23 112.8 70 70.0
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 9.3e-23 109.8 66 71.2
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 5.6e-20 100.5 71 57.7
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.6e-17 91.7 68 55.9
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 1.2e-14 82.8 43 83.7
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 2.7e-14 81.6 42 81.0
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 3.5e-14 81.3 41 82.9
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 8.7e-13 76.6 38 86.8
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 1.6e-11 72.4 38 84.2
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 1.6e-11 72.4 38 84.2
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 1.6e-11 72.4 38 84.2
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 1.6e-11 72.4 38 84.2
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 2.1e-11 72.0 37 86.5
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 8.4e-08 60.1 32 71.9


User provided reference genes

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