Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 4.2e-53 211.1 104 100.0
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 1.2e-44 183.0 94 95.7
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 3.6e-41 171.4 99 80.8
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 1.2e-39 166.4 86 93.0
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 2.6e-39 165.2 86 93.0
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 2.6e-39 165.2 86 93.0
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 3.4e-39 164.9 86 91.9
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 2.2e-38 162.2 84 95.2
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 3.8e-38 161.4 90 85.6
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 3.8e-38 161.4 84 92.9
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 3.8e-38 161.4 86 93.0
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 4.9e-38 161.0 84 95.2
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 6.4e-38 160.6 84 94.0
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 6.4e-38 160.6 84 94.0
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 6.4e-38 160.6 84 94.0
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 8.4e-38 160.2 84 94.0
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.1e-37 159.8 84 91.7
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.1e-37 159.8 85 91.8
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 1.4e-37 159.5 84 94.0
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.9e-37 159.1 84 91.7
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 3.2e-37 158.3 84 92.9
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 3.2e-37 158.3 84 91.7
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.2e-37 158.3 84 91.7
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.2e-37 158.3 84 91.7
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 3.2e-37 158.3 84 91.7
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 3.2e-37 158.3 84 91.7
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 3.2e-37 158.3 84 92.9
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 4.2e-37 157.9 84 91.7
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 5.4e-37 157.5 84 90.5
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 5.4e-37 157.5 84 91.7
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 5.4e-37 157.5 85 89.4
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 5.4e-37 157.5 84 91.7
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 5.4e-37 157.5 84 92.9
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 5.4e-37 157.5 84 92.9
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 5.4e-37 157.5 84 89.3
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 9.3e-37 156.8 84 92.9
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 9.3e-37 156.8 84 89.3
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 9.3e-37 156.8 84 91.7
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 9.3e-37 156.8 84 91.7
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 9.3e-37 156.8 84 92.9
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 9.3e-37 156.8 84 92.9
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 9.3e-37 156.8 84 90.5
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 9.3e-37 156.8 82 93.9
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.2e-36 156.4 84 89.3
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 1.2e-36 156.4 85 88.2
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.6e-36 156.0 84 90.5
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 2.1e-36 155.6 84 89.3
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 2.7e-36 155.2 84 90.5
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 2.7e-36 155.2 84 91.7
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 3.5e-36 154.8 84 91.7
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 4.6e-36 154.5 84 86.9
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 4.6e-36 154.5 84 89.3
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 4.6e-36 154.5 84 89.3
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 6.0e-36 154.1 81 90.1
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 6.0e-36 154.1 84 89.3
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 6.0e-36 154.1 84 90.5
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 6.0e-36 154.1 84 90.5
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 6.0e-36 154.1 84 90.5
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 7.9e-36 153.7 84 86.9
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 1.0e-35 153.3 84 91.7
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.0e-35 153.3 84 89.3
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 1.3e-35 152.9 83 88.0
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 1.8e-35 152.5 81 88.9
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 1.8e-35 152.5 84 88.1
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 1.8e-35 152.5 84 89.3
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.3e-35 152.1 84 89.3
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 2.3e-35 152.1 84 89.3
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 2.3e-35 152.1 85 88.2
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 3.0e-35 151.8 84 89.3
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 3.0e-35 151.8 84 86.9
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 3.0e-35 151.8 84 86.9
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 5.1e-35 151.0 84 88.1
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 5.1e-35 151.0 84 88.1
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 6.7e-35 150.6 84 84.5
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 1.1e-34 149.8 84 86.9
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 1.1e-34 149.8 84 85.7
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.1e-34 149.8 84 86.9
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 1.1e-34 149.8 79 91.1
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 1.5e-34 149.4 84 86.9
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 1.5e-34 149.4 84 85.7
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 1.9e-34 149.1 81 88.9
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.9e-34 149.1 85 85.9
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 1.9e-34 149.1 85 84.7
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 2.5e-34 148.7 84 88.1
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 3.3e-34 148.3 84 86.9
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 3.3e-34 148.3 84 86.9
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 3.3e-34 148.3 84 86.9
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 4.3e-34 147.9 84 85.7
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 5.6e-34 147.5 84 85.7
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 9.6e-34 146.7 84 83.3
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 1.3e-33 146.4 81 86.4
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 1.3e-33 146.4 84 84.5
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 1.6e-33 146.0 84 83.3
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 1.6e-33 146.0 84 85.7
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 2.1e-33 145.6 84 83.3
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 2.8e-33 145.2 84 83.3
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 3.7e-33 144.8 82 91.5
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 8.1e-33 143.7 84 82.1
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 1.1e-32 143.3 84 81.0
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 1.1e-32 143.3 84 82.1
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 1.4e-32 142.9 84 81.0
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.4e-32 142.9 84 84.5
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.8e-32 142.5 82 85.4
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 3.1e-32 141.7 84 81.0
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 3.1e-32 141.7 84 81.0
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 3.1e-32 141.7 84 78.6
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 5.3e-32 141.0 84 79.8
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 5.3e-32 141.0 84 79.8
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 5.3e-32 141.0 84 79.8
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 6.9e-32 140.6 84 79.8
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 1.2e-31 139.8 84 79.8
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 1.2e-31 139.8 84 81.0
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 3.8e-30 134.8 84 76.2
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 8.4e-30 133.7 84 75.0
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 9.3e-29 130.2 84 71.4
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 9.3e-29 130.2 84 71.4
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 2.7e-28 128.6 84 70.2
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.9e-27 124.8 84 67.9
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 1.9e-26 122.5 84 67.9
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.7e-25 118.2 84 64.3
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 1.8e-24 115.9 67 83.6
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.0e-19 98.6 87 51.7
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 6.7e-19 97.4 84 60.7
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 7.4e-18 94.0 85 56.5
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.4e-16 89.0 82 52.4
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 3.8e-14 81.6 50 80.0
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 4.2e-13 78.2 59 62.7
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 5.7e-10 67.8 51 58.8
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.8e-08 62.8 32 93.8
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 3.1e-08 62.0 32 90.6
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.2e-07 60.1 75 42.7


User provided reference genes

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