Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G187300 Glycine max HOM05D002637 ORTHO05D008095 3.7e-188 661.4 328 100.0
Phvul.011G190700 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 3.6e-159 565.1 328 85.4
VMungo1127G0026 Vigna mungo HOM05D002637 ORTHO05D008095 1.1e-155 553.5 326 83.4
Lj1g0002851 Lotus japonicus HOM05D002637 ORTHO05D008095 8.5e-153 543.9 328 83.2
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 1.4e-142 510.0 328 77.7
Lalb_Chr03g0040331 Lupinus albus HOM05D002637 ORTHO05D008095 4.0e-142 508.4 330 75.5
arahy.Tifrunner.gnm1.ann1.XZZ81X Arachis hypogaea HOM05D002637 ORTHO05D008095 1.5e-141 506.5 328 77.4
Psat0s4320g0040 Pisum sativum HOM05D002637 ORTHO05D008095 8.6e-137 490.7 328 75.9
Medtr7g407140 Medicago truncatula HOM05D002637 ORTHO05D008095 3.3e-136 488.8 325 77.2
GSVIVG01018268001 Vitis vinifera HOM05D002637 ORTHO05D008095 7.5e-125 451.1 329 67.8
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 3.2e-123 445.7 290 76.6
QL04p030554 Quercus lobata HOM05D002637 ORTHO05D008095 2.0e-122 443.0 342 65.5
CSS0015236 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 4.6e-122 441.8 329 66.3
CSS0036120 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D008095 1.7e-121 439.9 329 65.7
Dinv43626 Davidia involucrata HOM05D002637 ORTHO05D008095 1.7e-121 439.9 331 66.2
Hma1.2p1_0405F.1_g145580 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 5.0e-121 438.3 330 65.8
Hma1.2p1_3157F.1_g333383 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 5.0e-121 438.3 330 65.8
Atru.chr5.146 Acer truncatum HOM05D002637 ORTHO05D008095 2.8e-119 432.6 330 64.5
Haze_02837 Corylus avellana HOM05D002637 ORTHO05D008095 8.1e-119 431.0 330 63.9
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 8.9e-118 427.6 327 63.9
Thecc.01G393500 Theobroma cacao HOM05D002637 ORTHO05D008095 4.9e-116 421.8 334 64.7
Ciclev10021077m.g Citrus clementina HOM05D002637 ORTHO05D008095 6.4e-116 421.4 337 62.9
Potri.002G137300 Populus trichocarpa HOM05D002637 ORTHO05D008095 2.4e-115 419.5 326 64.7
Duzib133G1175 Durio zibethinus HOM05D002637 ORTHO05D008095 4.1e-115 418.7 330 63.6
Manes.01G272700 Manihot esculenta HOM05D002637 ORTHO05D008095 7.1e-115 417.9 328 62.8
Nn1g00861 Nelumbo nucifera HOM05D002637 ORTHO05D008095 5.1e-113 411.8 330 63.9
RcHm_v2.0_Chr1g0347591 Rosa chinensis HOM05D002637 ORTHO05D008095 1.1e-112 410.6 329 64.4
Prupe.2G132600 Prunus persica HOM05D002637 ORTHO05D008095 1.6e-111 406.8 328 60.1
Gorai.004G071300 Gossypium raimondii HOM05D002637 ORTHO05D008095 4.7e-111 405.2 329 61.7
Gohir.A08G058900 Gossypium hirsutum HOM05D002637 ORTHO05D008095 1.4e-110 403.7 329 61.4
FAN03G3044 Fragaria x ananassa HOM05D002637 ORTHO05D008095 1.8e-110 403.3 328 62.5
Gohir.D08G068100 Gossypium hirsutum HOM05D002637 ORTHO05D008095 5.2e-110 401.7 329 61.4
CsaV3_3G007610 Cucumis sativus L. HOM05D002637 ORTHO05D008095 6.8e-110 401.4 326 60.7
TWI59G1212 Tripterygium wilfordii HOM05D002637 ORTHO05D008095 8.9e-110 401.0 330 61.5
FvH4_7g09990 Fragaria vesca HOM05D002637 ORTHO05D008095 1.5e-109 400.2 329 62.6
Cc02_g25040 Coffea canephora HOM05D002637 ORTHO05D008095 4.4e-109 398.7 329 62.0
MELO3C005982.2 Cucumis melo HOM05D002637 ORTHO05D008095 1.7e-108 396.7 326 59.8
FAN06G0182 Fragaria x ananassa HOM05D002637 ORTHO05D008095 4.9e-108 395.2 336 61.0
FAN06G4488 Fragaria x ananassa HOM05D002637 ORTHO05D008095 6.4e-108 394.8 336 61.0
ClCG05G000440 Citrullus lanatus HOM05D002637 ORTHO05D008095 8.4e-108 394.4 326 59.8
ECA240G0640 Erigeron canadensis HOM05D002637 ORTHO05D008095 8.4e-108 394.4 328 60.1
Sed0022781 Sechium edule HOM05D002637 ORTHO05D008095 7.1e-107 391.3 325 59.4
Cpa.g.sc166.42 Carica papaya HOM05D002637 ORTHO05D008095 6.0e-106 388.3 331 60.1
Nitab4.5_0003553g0010 Nicotiana tabacum HOM05D002637 ORTHO05D008095 1.0e-105 387.5 335 57.6
Nitab4.5_0003696g0060 Nicotiana tabacum HOM05D002637 ORTHO05D008095 3.0e-105 386.0 335 57.9
Peaxi162Scf00030g00416 Petunia axillaris HOM05D002637 ORTHO05D008095 3.0e-105 386.0 333 57.4
Sopen01g036170 Solanum pennellii HOM05D002637 ORTHO05D008095 3.0e-105 386.0 329 58.1
Solyc01g090380.3 Solanum lycopersicum HOM05D002637 ORTHO05D008095 3.9e-105 385.6 329 58.1
THA.LOC104827587 Tarenaya hassleriana HOM05D002637 ORTHO05D008095 1.9e-104 383.3 331 57.7
Actinidia12150 Actinidia chinensis HOM05D002637 ORTHO05D008095 3.3e-104 382.5 303 64.0
Carub.0004s2744 Capsella rubella HOM05D002637 ORTHO05D008095 7.3e-104 381.3 329 57.1
Oeu063231.1 Olea europaea HOM05D002637 ORTHO05D008095 7.3e-104 381.3 332 59.0
HanXRQChr13g0423181 Helianthus annuus HOM05D002637 ORTHO05D008095 1.6e-103 380.2 328 57.6
Aqoxy3G02741 Aquilegia oxysepala HOM05D002637 ORTHO05D008095 2.4e-102 376.3 332 56.3
CANSAT64G0516 Cannabis sativa HOM05D002637 ORTHO05D008095 2.4e-102 376.3 330 59.1
Eucgr.D01520 Eucalyptus grandis HOM05D002637 ORTHO05D008095 3.1e-102 375.9 329 57.1
FAN10G1960 Fragaria x ananassa HOM05D002637 ORTHO05D008095 5.2e-102 375.2 336 58.9
Lsat_1_v5_gn_3_131600 Lactuca sativa HOM05D002637 ORTHO05D008095 6.8e-102 374.8 328 56.4
PGSC0003DMG402026045 Solanum tuberosum HOM05D002637 ORTHO05D008095 8.9e-102 374.4 329 56.5
Rhsim07G0035200 Rhododendron simsii HOM05D002637 ORTHO05D008095 2.6e-101 372.9 323 59.1
MSTRG.20697 Avicennia marina HOM05D002637 ORTHO05D008095 3.4e-101 372.5 330 58.8
MD07G1104800 Malus domestica HOM05D002637 ORTHO05D008095 7.6e-101 371.3 302 62.3
PGR004G1933 Punica granatum HOM05D002637 ORTHO05D008095 1.7e-100 370.2 332 55.1
COL.COLO4_12421 Corchorus olitorius HOM05D002637 ORTHO05D008095 4.9e-100 368.6 329 59.9
Lj7A545T102 Lonicera japonica HOM05D002637 ORTHO05D008095 6.4e-100 368.2 328 55.8
Sc26g0001610 Simmondsia chinensis HOM05D002637 ORTHO05D008095 1.4e-99 367.1 328 55.5
CAN.G362.5 Capsicum annuum HOM05D002637 ORTHO05D008095 1.9e-99 366.7 335 54.9
Thhalv10001543m.g Eutrema salsugineum HOM05D002637 ORTHO05D008095 3.5e-98 362.5 333 54.4
Aa31LG1G26400 Aethionema arabicum HOM05D002637 ORTHO05D008095 6.0e-98 361.7 345 52.2
AUR62021542 Chenopodium quinoa HOM05D002637 ORTHO05D008095 1.0e-97 360.9 328 56.1
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 1.7e-97 360.1 326 56.1
PSO063G7293 Papaver somniferum HOM05D002637 ORTHO05D008095 5.6e-96 355.1 330 53.6
AUR62008551 Chenopodium quinoa HOM05D002637 ORTHO05D008095 9.6e-96 354.4 327 55.0
EL10Ac1g00753 Beta vulgaris HOM05D002637 ORTHO05D008095 1.3e-95 354.0 324 56.5
Migut.B01542 Erythranthe guttata HOM05D002637 ORTHO05D008095 1.3e-95 354.0 330 57.3
vmacro13491 Vaccinium macrocarpon HOM05D002637 ORTHO05D008095 8.1e-95 351.3 295 60.7
AL4G43950 Arabidopsis lyrata HOM05D002637 ORTHO05D008095 1.4e-94 350.5 336 54.5
Sabra02G0106200 Salix brachista HOM05D001766 ORTHO05D001875 3.1e-94 349.4 371 51.8
BcaC02g07119 Brassica carinata HOM05D002637 ORTHO05D008095 2.0e-93 346.7 330 53.6
A04p33520 Brassica napus HOM05D002637 ORTHO05D008095 2.6e-93 346.3 328 54.3
CARHR140110 Cardamine hirsuta HOM05D002637 ORTHO05D008095 3.4e-93 345.9 334 53.6
Sp4g26950 Schrenkiella parvula HOM05D002637 ORTHO05D008095 7.6e-93 344.7 338 53.3
C04p71280 Brassica napus HOM05D002637 ORTHO05D008095 1.3e-92 344.0 330 53.9
BolC4t28632H Brassica oleracea HOM05D002637 ORTHO05D008095 1.3e-92 344.0 330 53.9
BcaB06g29403 Brassica carinata HOM05D002637 ORTHO05D008095 5.4e-91 338.6 330 53.9
BraA04t18814Z Brassica rapa HOM05D002637 ORTHO05D008095 2.1e-90 336.7 329 52.9
CDE09G0379 Ceratophyllum demersum HOM05D002637 ORTHO05D008095 1.5e-88 330.5 334 52.7
AT2G44850 Arabidopsis thaliana HOM05D002637 ORTHO05D008095 7.4e-88 328.2 292 56.2
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 9.6e-88 327.8 268 60.8
SHI13611 Sapria himalayana HOM05D002637 ORTHO05D008095 1.4e-86 323.9 340 51.8
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 3.2e-83 312.8 323 51.4
DCAR_015837 Daucus carota HOM05D002637 ORTHO05D008095 1.8e-81 307.0 329 50.8
Prupe.2G128900 Prunus persica HOM05D002637 ORTHO05D008095 2.5e-80 303.1 333 52.6
Hund17095 Selenicereus undatus HOM05D002637 ORTHO05D008095 6.9e-78 295.0 265 57.4
PSO782G4032 Papaver somniferum HOM05D002637 ORTHO05D008095 1.4e-75 287.3 327 45.6
Os02g0655100 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D008095 7.1e-75 285.0 329 47.1
Zm00001eb186370 Zea mays HOM05D002637 ORTHO05D008095 2.5e-72 276.6 338 43.2
HPP92_014683 Vanilla planifolia HOM05D002637 ORTHO05D008095 9.6e-72 274.6 332 47.0
ATR0057G061 Amborella trichopoda HOM05D002637 ORTHO05D008095 3.4e-69 266.2 350 44.0
Eucgr.D01526 Eucalyptus grandis HOM05D002637 ORTHO05D008095 2.5e-67 260.0 260 52.7
AagrBONN_evm.TU.Sc2ySwM_117.1982 Anthoceros agrestis HOM05D002637 ORTHO05D008095 3.6e-66 256.1 341 43.1
Pp3c4_13850 Physcomitrium patens HOM05D002637 ORTHO05D008095 1.4e-59 234.2 384 38.5
TAR629G1915 Trochodendron aralioides HOM05D002637 ORTHO05D008095 4.2e-59 232.6 216 57.9
TPR.G28606 Trifolium pratense HOM05D002637 ORTHO05D008095 3.6e-58 229.6 139 80.6
Pp3c12_10320 Physcomitrium patens HOM05D002637 ORTHO05D008095 2.3e-57 226.9 388 35.8
SalBow5G4529 Salvia bowleyana HOM05D002637 ORTHO05D008095 3.9e-57 226.1 181 61.9
Medtr7g407110 Medicago truncatula HOM05D002637 ORTHO05D008095 1.4e-46 191.0 118 78.8
Hma1.2p1_2406F.1_g321490 Hydrangea macrophylla HOM05D002637 ORTHO05D008095 1.2e-45 188.0 171 59.1
Ah.05g177920 Amaranthus hybridus HOM05D002637 ORTHO05D008095 1.0e-44 184.9 133 66.2
Phvul.011G167200 Phaseolus vulgaris HOM05D002637 ORTHO05D008095 5.2e-41 172.6 271 42.8
TPR.G7688 Trifolium pratense HOM05D002637 ORTHO05D008095 6.7e-41 172.2 122 70.5
TPR.G36686 Trifolium pratense HOM05D002637 ORTHO05D008095 1.0e-36 158.3 101 79.2
SEGI_39924 Sequoiadendron giganteum HOM05D002637 ORTHO05D008095 2.2e-36 157.1 133 56.4
CBR_g61261 Chara braunii HOM05D002637 ORTHO05D008095 9.4e-35 151.8 320 31.2
MBI04_g07220_MAGBIO Magnolia biondii HOM05D002637 ORTHO05D008095 1.2e-34 151.4 97 70.1
TPR.G32964 Trifolium pratense HOM05D002637 ORTHO05D008095 1.8e-33 147.5 87 82.8
Medtr7g006510 Medicago truncatula HOM05D002637 ORTHO05D008095 2.3e-33 147.1 120 63.3
SEGI_14087 Sequoiadendron giganteum HOM05D002637 ORTHO05D008095 3.4e-32 143.3 214 41.1
Atru.chr5.3330 Acer truncatum HOM05D002637 ORTHO05D008095 1.1e-19 101.7 144 43.1
Cre03.g181600 Chlamydomonas reinhardtii HOM05D002637 ORTHO05D008095 5.7e-16 89.4 318 24.8
Atru.chr5.3333 Acer truncatum HOM05D000263 ORTHO05D000213 2.2e-15 87.4 127 44.9
FAN06G2370 Fragaria x ananassa HOM05D002637 ORTHO05D008095 6.4e-15 85.9 59 67.8
Aa31LG7G11720 Aethionema arabicum HOM05D002637 ORTHO05D008095 2.3e-12 77.4 67 55.2
TAR629G2985 Trochodendron aralioides HOM05D002637 ORTHO05D008095 2.8e-10 70.5 55 54.5
Atru.chr5.3338 Acer truncatum HOM05D002637 ORTHO05D008095 1.0e-09 68.6 47 66.0


User provided reference genes

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