Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 3.2e-220 768.1 374 100.0
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 3.3e-132 475.7 396 62.4
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 1.8e-114 416.8 386 56.7
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 4.0e-106 389.0 555 41.6
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 6.0e-102 375.2 407 48.6
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 6.6e-101 371.7 397 52.4
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 5.6e-100 368.6 382 53.4
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 1.8e-98 363.6 385 53.0
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 3.8e-96 355.9 398 50.0
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 1.6e-94 350.5 398 49.2
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 1.6e-94 350.5 398 49.2
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 7.8e-94 348.2 390 50.0
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 8.1e-91 338.2 393 48.6
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 4.4e-89 332.4 445 45.2
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 7.3e-84 315.1 315 50.8
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 2.4e-82 310.1 369 46.9
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 1.3e-80 304.3 393 41.5
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 1.1e-79 301.2 390 40.5
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 5.6e-76 288.9 372 41.1
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 5.6e-76 288.9 361 44.0
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 3.7e-75 286.2 395 39.7
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 4.8e-75 285.8 388 41.5
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 6.9e-74 282.0 385 40.0
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 1.2e-73 281.2 412 37.6
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 2.0e-73 280.4 413 35.8
Medtr3g082740 Medicago truncatula HOM05D003575 ORTHO05D003587 9.9e-73 278.1 285 54.0
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 8.4e-72 275.0 398 36.7
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.4e-71 274.2 398 36.4
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 2.5e-71 273.5 399 37.1
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 5.5e-71 272.3 407 37.3
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 6.0e-70 268.9 378 40.7
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 1.0e-69 268.1 413 36.3
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 1.3e-69 267.7 379 40.1
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 1.8e-69 267.3 378 38.9
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.1e-69 265.8 384 38.8
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 6.7e-69 265.4 408 37.5
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 1.1e-68 264.6 382 37.7
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.5e-68 264.2 392 38.8
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 1.9e-68 263.8 392 37.8
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 2.5e-68 263.5 433 36.0
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 3.3e-68 263.1 369 37.1
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 1.8e-66 257.3 394 36.3
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 1.8e-66 257.3 351 39.3
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 9.0e-66 255.0 395 36.5
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 5.8e-65 252.3 391 38.9
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 5.8e-65 252.3 398 35.4
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 2.2e-64 250.4 394 36.3
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 2.9e-64 250.0 396 35.9
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 6.5e-64 248.8 408 36.5
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 6.5e-64 248.8 413 36.6
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.9e-63 247.3 396 35.1
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 3.2e-63 246.5 395 34.7
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 2.7e-62 243.4 381 36.7
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 4.6e-62 242.7 399 34.3
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 6.0e-62 242.3 370 37.3
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 3.9e-61 239.6 402 34.1
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 6.7e-61 238.8 400 35.5
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.1e-60 238.0 398 36.2
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.5e-60 236.9 383 35.0
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 4.3e-60 236.1 388 35.6
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 3.7e-59 233.0 401 33.9
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 6.3e-59 232.3 391 33.2
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 1.1e-58 231.5 391 33.2
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 1.8e-58 230.7 398 34.9
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.8e-58 230.7 398 34.9
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 2.4e-58 230.3 399 35.8
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 3.1e-58 229.9 391 32.7
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 3.4e-57 226.5 413 32.9
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 1.0e-56 224.9 363 34.4
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 4.6e-54 216.1 429 31.7
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 4.6e-54 216.1 368 33.4
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 4.6e-54 216.1 432 30.1
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 6.1e-54 215.7 483 30.4
VMungo1127G1165 Vigna mungo HOM05D003575 ORTHO05D003587 1.4e-53 214.5 182 56.6
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 3.0e-53 213.4 363 34.7
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 3.0e-53 213.4 364 34.1
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 3.0e-53 213.4 428 31.1
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 3.9e-53 213.0 401 34.7
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 8.8e-53 211.8 403 33.3
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 1.5e-52 211.1 414 30.7
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 2.0e-52 210.7 328 35.4
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 2.5e-52 210.3 394 31.5
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 2.5e-52 210.3 318 35.2
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 2.5e-52 210.3 302 38.1
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 3.3e-52 209.9 428 30.8
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 7.4e-52 208.8 402 31.8
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.3e-51 208.0 288 36.1
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 4.8e-51 206.1 401 33.7
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.3e-51 205.7 402 31.1
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 1.1e-50 204.9 376 32.7
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 1.5e-49 201.1 391 32.5
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 2.0e-49 200.7 418 31.1
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 1.3e-48 198.0 390 31.0
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.9e-48 196.8 369 32.8
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 6.5e-48 195.7 360 34.2
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 7.2e-47 192.2 378 33.1
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 9.4e-47 191.8 350 31.4
TPR.G40538 Trifolium pratense HOM05D003575 ORTHO05D003587 1.6e-46 191.0 157 61.1
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 7.9e-46 188.7 285 33.7
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.9e-45 186.4 459 27.7
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.4e-44 183.0 428 28.3
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 4.4e-44 183.0 330 31.5
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 5.7e-44 182.6 314 36.3
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 2.2e-43 180.6 365 30.1
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 8.2e-43 178.7 365 30.1
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.4e-42 177.9 349 30.9
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 1.1e-36 158.3 351 28.2
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 5.7e-36 156.0 292 31.2
Glyma.15G224002 Glycine max HOM05D003575 ORTHO05D003587 1.3e-35 154.8 91 82.4
Prupe.3G196400 Prunus persica HOM05D003575 ORTHO05D003587 2.2e-35 154.1 190 43.2
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 6.3e-35 152.5 345 27.8
Dinv21311 Davidia involucrata HOM05D003575 ORTHO05D003587 7.7e-33 145.6 183 41.0
RcHm_v2.0_Chr2g0133241 Rosa chinensis HOM05D003575 ORTHO05D003587 1.5e-31 141.4 166 42.2
RcHm_v2.0_Chr2g0155781 Rosa chinensis HOM05D003575 ORTHO05D003587 6.1e-30 136.0 167 43.1
BraA03t14662Z Brassica rapa HOM05D003575 ORTHO05D003587 4.0e-29 133.3 196 36.2
A03p55910 Brassica napus HOM05D003575 ORTHO05D003587 6.8e-29 132.5 204 34.8
RcHm_v2.0_Chr2g0133311 Rosa chinensis HOM05D003575 ORTHO05D003587 6.8e-29 132.5 166 41.0
Manes.12G092200 Manihot esculenta HOM05D003575 ORTHO05D003587 1.2e-28 131.7 164 36.6
C07p54200 Brassica napus HOM05D003575 ORTHO05D003587 3.4e-28 130.2 204 34.3
BolC7t45906H Brassica oleracea HOM05D003575 ORTHO05D003587 3.4e-28 130.2 204 34.3
Carub.0007s1568 Capsella rubella HOM05D003575 ORTHO05D003587 4.4e-28 129.8 167 37.7
Thhalv10027138m.g Eutrema salsugineum HOM05D003575 ORTHO05D003587 4.4e-28 129.8 168 38.1
RcHm_v2.0_Chr2g0155771 Rosa chinensis HOM05D003575 ORTHO05D003587 5.7e-28 129.4 153 42.5
FAN14G1012 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.3e-27 128.3 168 39.9
FAN15G3143 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.3e-27 128.3 170 40.6
MD09G1128800 Malus domestica HOM05D003575 ORTHO05D003587 3.7e-27 126.7 152 40.8
AT4G25330 Arabidopsis thaliana HOM05D003575 ORTHO05D003587 4.8e-27 126.3 162 38.9
FvH4_2g12920 Fragaria vesca HOM05D003575 ORTHO05D003587 4.8e-27 126.3 170 40.0
FAN24G1566 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.8e-27 126.3 170 40.0
AL7G27800 Arabidopsis lyrata HOM05D003575 ORTHO05D003587 6.3e-27 125.9 162 39.5
FAN20G0397 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.3e-27 125.9 170 39.4
THA.LOC104812766 Tarenaya hassleriana HOM05D003575 ORTHO05D003587 8.3e-27 125.6 163 37.4
PSO832G1827 Papaver somniferum HOM05D003575 ORTHO05D003587 2.4e-26 124.0 181 35.4
Hund01540 Selenicereus undatus HOM05D003575 ORTHO05D003587 2.4e-26 124.0 374 25.4
PGSC0003DMG400017442 Solanum tuberosum HOM05D003575 ORTHO05D003587 2.4e-26 124.0 167 36.5
BcaC06g32820 Brassica carinata HOM05D003575 ORTHO05D003587 7.0e-26 122.5 204 32.8
Sp7g23350 Schrenkiella parvula HOM05D003575 ORTHO05D003587 2.0e-25 120.9 175 35.4
RcHm_v2.0_Chr2g0155791 Rosa chinensis HOM05D003575 ORTHO05D003587 1.0e-24 118.6 155 38.1
FAN16G0569 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.3e-24 118.2 345 30.4
PSO170G1005 Papaver somniferum HOM05D003575 ORTHO05D003587 1.7e-24 117.9 177 33.9
PSO591G0010 Papaver somniferum HOM05D003575 ORTHO05D003587 2.5e-23 114.0 173 31.8
PSO013G0348 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-22 111.7 166 34.9
Dinv26593 Davidia involucrata HOM05D003575 ORTHO05D003587 1.6e-22 111.3 111 47.7
Aqoxy1G03433 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 4.7e-22 109.8 125 42.4
PSO013G0383 Papaver somniferum HOM05D003575 ORTHO05D003587 6.1e-22 109.4 166 34.3
PSO339G1364 Papaver somniferum HOM05D003575 ORTHO05D003587 6.1e-22 109.4 166 31.9
PSO339G4641 Papaver somniferum HOM05D003575 ORTHO05D003587 6.1e-22 109.4 166 31.9
Medtr3g082725 Medicago truncatula HOM05D003575 ORTHO05D003587 1.0e-21 108.6 114 51.8
Cc00_g01040 Coffea canephora HOM05D003575 ORTHO05D003587 1.4e-21 108.2 154 37.7
PSO832G3669 Papaver somniferum HOM05D003575 ORTHO05D003587 1.4e-21 108.2 166 34.3
Lalb_Chr14g0362571 Lupinus albus HOM05D003575 ORTHO05D003587 3.0e-21 107.1 86 66.3
PSO013G0020 Papaver somniferum HOM05D003575 ORTHO05D003587 5.2e-21 106.3 175 30.9
TAR624G0842 Trochodendron aralioides HOM05D003575 ORTHO05D003587 5.2e-21 106.3 110 42.7
Zm00001eb287050 Zea mays HOM05D003575 ORTHO05D003587 6.8e-21 105.9 161 36.0
PSO013G0119 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-20 105.1 171 31.6
PSO832G1021 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-20 105.1 171 31.6
Lsat_1_v5_gn_9_62000 Lactuca sativa HOM05D000576 ORTHO05D000368 2.6e-20 104.0 165 35.2
Aqoxy4G01549 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 4.4e-20 103.2 151 36.4
Cc00_g01030 Coffea canephora HOM05D003575 ORTHO05D003587 8.3e-19 99.0 123 44.7
Hund01541 Selenicereus undatus HOM05D009102 ORTHO05D003587 1.8e-18 97.8 97 48.5
PSO013G0266 Papaver somniferum HOM05D003575 ORTHO05D003587 2.7e-17 94.0 166 30.1
MBI15_g06462_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 1.7e-16 91.3 283 25.4
MD09G1129100 Malus domestica HOM05D003575 ORTHO05D003587 1.2e-14 85.1 99 40.4
Lsat_1_v5_gn_8_78381 Lactuca sativa HOM05D003575 ORTHO05D003587 3.6e-14 83.6 119 36.1
MBI15_g48140_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 8.0e-14 82.4 85 43.5
Zm00001eb264990 Zea mays HOM05D003575 ORTHO05D003587 1.0e-13 82.0 138 34.1
Mapoly0021s0099 Marchantia polymorpha HOM05D003575 ORTHO05D003587 1.8e-13 81.3 163 30.1
FvH4_6g40520 Fragaria vesca HOM05D003575 ORTHO05D003587 6.8e-13 79.3 96 38.5
PSO017G4852 Papaver somniferum HOM05D003575 ORTHO05D003587 6.8e-13 79.3 165 30.3
Aqoxy91s001 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.6e-12 77.4 114 38.6
Mapoly0066s0003 Marchantia polymorpha HOM05D040683 ORTHO05D003587 3.4e-12 77.0 178 28.7
FAN14G3058 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.4e-12 76.6 96 34.4
Oeu041110.1 Olea europaea HOM05D003575 ORTHO05D003587 7.5e-12 75.9 108 41.7
PSO339G3010 Papaver somniferum HOM05D003575 ORTHO05D003587 1.4e-10 71.6 101 35.6
FAN11G0216 Fragaria x ananassa HOM05D003575 ORTHO05D045963 1.2e-09 68.6 141 31.2
FvH4_3g20450 Fragaria vesca HOM05D039614 ORTHO05D045963 3.5e-09 67.0 101 33.7
PSO339G5808 Papaver somniferum HOM05D003575 ORTHO05D003587 4.5e-09 66.6 140 27.1
CAN.G437.9 Capsicum annuum HOM05D003575 ORTHO05D003587 5.9e-09 66.2 85 37.6
MD09G1128900 Malus domestica HOM05D003575 ORTHO05D003587 1.3e-08 65.1 66 47.0
Dinv26594 Davidia involucrata HOM05D000074 ORTHO05D001293 6.6e-08 62.8 78 42.3
EL10Ac6g15056 Beta vulgaris HOM05D003575 ORTHO05D003587 2.5e-07 60.8 71 39.4
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 3.3e-07 60.5 63 44.4
Medtr6g042050 Medicago truncatula HOM05D003575 ORTHO05D003587 3.3e-07 60.5 60 51.7
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 6.1e-06 56.2 127 32.3


User provided reference genes

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