Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.8e-257 892.1 465 100.0
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 7.4e-235 817.0 463 91.8
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.6e-221 772.7 467 85.7
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 3.2e-214 748.4 467 83.9
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 4.1e-185 651.7 465 73.8
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 2.4e-177 625.9 473 70.4
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 1.6e-176 623.2 472 71.2
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 5.6e-174 614.8 473 70.2
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 2.3e-167 592.8 476 66.2
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 5.8e-155 551.6 477 62.3
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 4.9e-154 548.5 476 62.6
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 1.4e-153 547.0 478 62.1
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 4.2e-153 545.4 478 62.3
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 4.8e-149 531.9 475 61.9
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 2.4e-148 529.6 470 61.5
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 2.9e-146 522.7 477 61.0
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.4e-145 520.4 475 61.7
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 5.4e-145 518.5 478 60.5
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.2e-144 517.3 470 60.0
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.6e-144 516.9 472 61.0
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.0e-143 514.2 480 60.6
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 1.0e-143 514.2 471 61.1
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 2.3e-143 513.1 472 61.7
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 6.6e-143 511.5 480 60.2
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.1e-142 510.8 470 61.1
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 3.3e-142 509.2 477 60.6
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 9.6e-142 507.7 480 60.6
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.6e-141 506.9 469 61.4
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.6e-141 506.9 469 61.4
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.8e-141 506.1 480 60.2
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 8.1e-141 504.6 478 61.1
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 1.1e-140 504.2 472 60.0
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 4.0e-140 502.3 476 61.3
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 4.5e-139 498.8 474 60.5
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 4.9e-138 495.4 466 59.9
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.4e-137 493.8 469 59.3
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 4.2e-137 492.3 478 58.6
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 5.5e-137 491.9 476 60.1
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 7.1e-137 491.5 477 59.3
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 2.1e-136 490.0 480 58.5
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 4.6e-136 488.8 345 71.6
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 3.9e-135 485.7 471 58.6
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 5.1e-135 485.3 601 49.3
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 6.7e-135 485.0 476 59.9
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.5e-134 483.8 471 58.6
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.5e-134 483.8 474 56.5
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 1.5e-134 483.8 478 59.2
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 3.3e-134 482.6 472 57.4
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 3.3e-134 482.6 483 56.5
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 9.6e-134 481.1 474 57.4
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 9.6e-134 481.1 468 59.0
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 4.8e-133 478.8 371 70.6
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.8e-133 478.8 468 57.5
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 5.8e-131 471.9 476 56.3
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 7.6e-131 471.5 474 58.0
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 7.1e-129 464.9 468 56.6
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.2e-128 464.2 480 57.3
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.2e-128 464.2 471 56.1
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 3.0e-127 459.5 474 57.4
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 9.6e-126 454.5 465 55.9
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.1e-125 453.4 482 54.4
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.8e-125 453.0 463 55.9
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.7e-125 452.6 465 56.6
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 7.2e-121 438.3 507 52.7
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 1.0e-119 434.5 485 52.4
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.0e-119 434.5 466 53.2
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 3.9e-119 432.6 540 49.6
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 2.2e-117 426.8 469 54.6
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 3.7e-117 426.0 465 52.7
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.6e-115 419.9 432 57.6
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 4.5e-115 419.1 377 60.2
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.3e-114 417.5 474 51.3
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 6.5e-114 415.2 475 52.8
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 6.5e-114 415.2 470 51.9
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 6.1e-112 408.7 474 50.6
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 6.1e-112 408.7 505 50.3
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 1.0e-111 407.9 474 50.8
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 3.9e-111 406.0 471 51.6
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 4.3e-110 402.5 478 49.8
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 9.7e-110 401.4 483 51.6
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 3.7e-109 399.4 475 50.9
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.1e-108 397.9 475 49.7
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 5.3e-108 395.6 475 49.7
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.3e-106 391.0 474 50.0
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.7e-106 390.6 479 50.7
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 1.7e-106 390.6 480 50.8
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.1e-105 387.9 472 50.4
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.4e-105 387.5 475 49.9
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.4e-105 387.5 471 49.7
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.4e-105 387.5 481 50.5
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.4e-105 387.5 469 50.1
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.4e-105 387.5 414 53.6
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.5e-105 386.7 471 49.7
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 4.2e-105 386.0 469 49.5
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 4.2e-105 386.0 497 47.1
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 9.4e-105 384.8 476 50.4
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.2e-104 384.4 474 50.4
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 1.6e-104 384.0 465 49.9
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.8e-103 380.6 465 49.0
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.3e-103 380.2 470 49.4
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 6.7e-103 378.6 477 48.6
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 6.7e-103 378.6 473 49.3
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 8.8e-103 378.3 465 50.1
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 1.1e-102 377.9 466 48.1
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.5e-102 377.5 470 48.7
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 2.6e-102 376.7 534 46.3
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 3.3e-102 376.3 461 49.5
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 7.4e-102 375.2 480 47.7
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 9.7e-102 374.8 473 48.4
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 1.7e-101 374.0 473 49.7
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 4.8e-101 372.5 473 49.0
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 6.3e-101 372.1 487 47.2
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 3.1e-100 369.8 463 48.4
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 5.9e-99 365.5 458 48.0
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.7e-98 364.0 467 48.0
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 2.2e-98 363.6 458 50.4
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 7.2e-97 358.6 474 47.5
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 2.1e-96 357.1 463 49.0
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 2.3e-95 353.6 463 47.7
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 4.0e-95 352.8 474 47.0
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.0e-94 350.5 368 55.2
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 5.7e-94 349.0 308 60.1
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 5.7e-94 349.0 497 45.9
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 6.3e-93 345.5 408 51.2
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.4e-92 344.4 469 46.5
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 1.6e-91 340.9 278 62.9
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 2.2e-90 337.0 472 46.4
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 1.1e-89 334.7 415 47.2
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.8e-87 327.4 371 49.6
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 2.6e-86 323.6 396 48.0
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.3e-85 321.2 449 46.3
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 1.7e-85 320.9 459 45.1
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 2.2e-82 310.5 430 46.5
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 1.9e-81 307.4 380 47.6
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 2.3e-79 300.4 472 41.7
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 4.9e-77 292.7 309 52.8
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.8e-76 290.8 383 48.3
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 1.5e-73 281.2 357 45.7
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 7.3e-73 278.9 480 42.3
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 1.6e-72 277.7 368 43.2
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.8e-71 274.2 349 48.7
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 3.7e-69 266.5 227 60.4
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 4.9e-69 266.2 243 57.6
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 6.4e-69 265.8 399 44.4
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 7.8e-67 258.8 369 44.7
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.0e-66 256.9 310 44.8
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 5.0e-66 256.1 310 44.8
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 2.6e-62 243.8 402 40.3
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 9.8e-62 241.9 398 40.5
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 6.4e-61 239.2 309 44.7
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 5.0e-58 229.6 144 76.4
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 7.3e-57 225.7 349 43.6
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 2.1e-56 224.2 395 38.2
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 8.1e-56 222.2 402 38.3
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.3e-55 220.7 293 43.0
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.4e-52 211.5 359 39.8
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 1.0e-50 205.3 319 40.1
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 7.3e-49 199.1 321 39.9
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 7.3e-49 199.1 197 53.8
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 2.1e-48 197.6 260 47.7
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 8.1e-48 195.7 272 44.1
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 1.5e-46 191.4 200 52.0
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 6.4e-45 186.0 204 50.0
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.7e-37 161.4 102 75.5
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 2.9e-37 160.6 139 57.6
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 6.2e-32 142.9 217 43.8
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 2.2e-29 134.4 82 80.5
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 3.2e-28 130.6 167 46.7
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.3e-26 125.2 76 76.3
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 3.0e-26 124.0 107 59.8
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 2.5e-25 120.9 196 38.3
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.8e-21 107.1 200 36.5
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 3.8e-21 107.1 189 36.0
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 4.9e-21 106.7 86 62.8
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 3.2e-20 104.0 128 47.7
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 3.1e-15 87.4 74 56.8
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 2.6e-14 84.3 63 65.1
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 1.9e-09 68.2 52 63.5
Medtr4g097660 Medicago truncatula HOM05D003737 ORTHO05D048953 9.0e-07 59.3 63 46.0
Medtr4g097690 Medicago truncatula HOM05D003737 ORTHO05D048953 1.5e-06 58.5 36 66.7


User provided reference genes

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