Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 3.9e-108 394.8 198 100.0
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 3.6e-82 308.5 163 92.6
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 4.0e-81 305.1 161 93.2
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 3.4e-80 302.0 163 90.8
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.4e-80 302.0 163 90.8
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.4e-80 302.0 163 90.8
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 3.4e-80 302.0 161 91.9
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 3.4e-80 302.0 161 91.9
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 4.4e-80 301.6 161 91.9
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 7.6e-80 300.8 161 91.3
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 7.6e-80 300.8 161 91.3
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 9.9e-80 300.4 163 90.2
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.7e-79 299.7 161 89.4
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.7e-79 299.7 161 90.1
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 1.7e-79 299.7 161 91.9
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 2.9e-79 298.9 161 91.3
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 2.9e-79 298.9 161 90.7
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 3.8e-79 298.5 161 90.7
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 6.4e-79 297.7 163 88.3
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 6.4e-79 297.7 161 90.7
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 8.4e-79 297.4 161 91.3
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 1.1e-78 297.0 161 90.7
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 1.1e-78 297.0 161 90.7
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 1.9e-78 296.2 161 90.7
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 1.9e-78 296.2 161 90.1
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 2.4e-78 295.8 161 88.8
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 2.4e-78 295.8 161 89.4
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 2.4e-78 295.8 161 88.8
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 3.2e-78 295.4 161 89.4
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 4.2e-78 295.0 161 88.8
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 4.2e-78 295.0 161 89.4
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 5.4e-78 294.7 161 88.2
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 7.1e-78 294.3 161 88.8
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 1.2e-77 293.5 161 87.6
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.2e-77 293.5 173 84.4
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.2e-77 293.5 173 84.4
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 1.6e-77 293.1 161 88.2
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 2.1e-77 292.7 161 87.0
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 2.7e-77 292.4 161 88.2
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 2.7e-77 292.4 161 87.0
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 2.7e-77 292.4 161 88.2
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 6.0e-77 291.2 161 87.0
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 6.0e-77 291.2 161 86.3
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 6.0e-77 291.2 161 88.2
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 6.0e-77 291.2 161 88.2
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 6.0e-77 291.2 161 88.2
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.0e-76 290.4 161 88.2
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 1.3e-76 290.0 185 78.9
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 1.3e-76 290.0 160 86.9
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 1.3e-76 290.0 161 87.6
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.7e-76 289.7 161 85.7
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.3e-76 289.3 161 87.6
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 3.0e-76 288.9 187 79.7
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 3.0e-76 288.9 161 87.6
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 3.0e-76 288.9 171 83.6
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 3.0e-76 288.9 161 85.7
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 6.6e-76 287.7 163 85.3
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 8.7e-76 287.3 161 86.3
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 1.1e-75 287.0 161 86.3
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.1e-75 287.0 161 85.7
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.1e-75 287.0 161 86.3
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 1.5e-75 286.6 161 87.6
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 1.5e-75 286.6 161 85.7
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 1.5e-75 286.6 161 86.3
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 1.9e-75 286.2 161 87.6
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 1.9e-75 286.2 161 87.0
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 2.5e-75 285.8 161 85.7
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 2.5e-75 285.8 161 87.0
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 4.3e-75 285.0 161 85.7
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 5.6e-75 284.6 161 85.1
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 7.3e-75 284.3 161 84.5
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 7.3e-75 284.3 161 85.7
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 7.3e-75 284.3 161 85.7
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 7.3e-75 284.3 161 85.7
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 7.3e-75 284.3 161 83.9
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 1.3e-74 283.5 188 76.6
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 1.6e-74 283.1 176 80.1
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 1.6e-74 283.1 163 84.7
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 3.6e-74 282.0 161 83.2
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 3.6e-74 282.0 161 83.9
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 4.8e-74 281.6 161 83.9
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 6.2e-74 281.2 161 82.6
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 1.4e-73 280.0 161 82.6
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.4e-73 280.0 162 85.2
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 1.8e-73 279.6 163 82.2
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 3.1e-73 278.9 161 83.2
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 4.0e-73 278.5 189 74.6
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 9.0e-73 277.3 161 82.0
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 9.0e-73 277.3 173 80.3
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 1.2e-72 276.9 161 82.0
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 2.0e-72 276.2 161 81.4
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 4.5e-72 275.0 162 80.2
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 5.8e-72 274.6 156 86.5
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 7.6e-72 274.2 162 79.6
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 9.9e-72 273.9 162 79.0
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 9.9e-72 273.9 161 82.0
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 1.3e-71 273.5 162 79.0
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 1.7e-71 273.1 162 78.4
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 1.7e-71 273.1 161 78.9
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 2.2e-71 272.7 161 80.1
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 3.8e-71 271.9 161 78.9
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 3.8e-71 271.9 169 79.9
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 8.4e-71 270.8 158 81.0
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 8.4e-71 270.8 162 79.6
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 7.1e-70 267.7 161 77.6
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 7.1e-70 267.7 161 76.4
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 1.3e-68 263.5 161 76.4
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.8e-68 263.1 160 76.9
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.9e-68 261.9 158 75.3
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 7.4e-67 257.7 212 64.2
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 7.4e-67 257.7 163 71.8
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 1.3e-66 256.9 161 72.7
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.6e-66 256.5 162 72.8
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 1.6e-61 240.0 161 75.2
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 8.2e-58 227.6 130 85.4
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 6.1e-53 211.5 111 88.3
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 1.8e-52 209.9 162 61.7
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 6.9e-49 198.0 111 83.8
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 3.4e-48 195.7 107 81.3
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 5.9e-48 194.9 159 55.3
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.9e-46 189.9 158 57.0
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.3e-39 167.2 159 51.6
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 1.2e-37 160.6 79 93.7
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 2.1e-37 159.8 79 92.4
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 3.0e-36 156.0 79 89.9
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 3.9e-36 155.6 102 82.4
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 8.8e-36 154.5 79 89.9
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 6.3e-34 148.3 80 82.5
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 6.3e-34 148.3 119 63.0
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 8.2e-34 147.9 71 95.8
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 9.1e-33 144.4 82 91.5
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 4.5e-32 142.1 82 86.6
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 1.7e-31 140.2 81 86.4
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 5.0e-31 138.7 155 44.5
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 8.5e-31 137.9 128 55.5
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 2.5e-30 136.3 68 91.2
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 4.2e-30 135.6 82 81.7
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 7.2e-30 134.8 82 82.9
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 1.0e-28 131.0 68 83.8
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 1.8e-25 120.2 69 76.8
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 9.1e-25 117.9 69 75.4
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 9.1e-25 117.9 69 75.4
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 1.8e-17 93.6 51 78.4
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 5.9e-16 88.6 47 85.1
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 1.0e-12 77.8 40 85.0
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 3.0e-12 76.3 39 84.6
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 3.0e-12 76.3 39 84.6
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 3.0e-12 76.3 39 84.6
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 3.0e-12 76.3 39 84.6
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 3.4e-11 72.8 53 73.6


User provided reference genes

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