Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 1.7e-120 436.0 223 100.0
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 1.9e-95 352.8 216 84.7
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 1.4e-93 346.7 204 87.7
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 4.1e-90 335.1 204 84.3
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 1.6e-89 333.2 204 81.9
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 4.5e-89 331.6 204 83.8
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 2.2e-88 329.3 203 81.3
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 8.5e-88 327.4 226 73.9
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 7.2e-87 324.3 224 73.7
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 2.1e-86 322.8 204 79.4
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 6.1e-86 321.2 204 79.4
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 2.0e-84 316.2 204 78.4
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 4.4e-84 315.1 204 78.4
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 4.0e-77 292.0 205 71.2
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 2.0e-76 289.7 205 70.7
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 2.0e-76 289.7 205 71.2
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 9.8e-76 287.3 205 71.2
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.3e-75 287.0 205 70.2
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 1.3e-75 287.0 205 70.2
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 3.7e-75 285.4 205 69.3
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 4.9e-75 285.0 205 70.2
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 1.8e-74 283.1 205 69.8
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 1.8e-74 283.1 205 69.8
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 3.1e-74 282.3 204 73.0
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 4.1e-74 282.0 219 65.3
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 4.1e-74 282.0 219 65.3
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 7.0e-74 281.2 224 65.6
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 7.0e-74 281.2 224 65.6
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 1.6e-73 280.0 218 65.6
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 3.5e-73 278.9 205 69.3
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 3.5e-73 278.9 224 64.7
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 5.9e-73 278.1 205 68.8
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 7.7e-73 277.7 224 64.7
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 7.7e-73 277.7 204 68.6
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 7.7e-73 277.7 205 68.3
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 1.0e-72 277.3 218 67.0
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 1.0e-72 277.3 205 67.8
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 1.0e-72 277.3 218 65.1
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 1.7e-72 276.6 205 68.3
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 2.3e-72 276.2 205 67.8
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 6.6e-72 274.6 205 68.8
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 1.1e-71 273.9 205 67.8
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 1.5e-71 273.5 218 64.2
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 2.5e-71 272.7 205 67.3
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 5.6e-71 271.6 218 63.3
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 7.3e-71 271.2 219 62.1
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 9.5e-71 270.8 211 66.8
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 9.5e-71 270.8 222 63.1
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 1.2e-70 270.4 204 67.2
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 1.6e-70 270.0 207 66.7
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.1e-70 269.6 205 65.4
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 2.8e-70 269.2 206 66.5
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 4.7e-70 268.5 219 64.4
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 4.7e-70 268.5 220 62.7
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 8.0e-70 267.7 218 64.7
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 8.0e-70 267.7 217 62.7
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 1.0e-69 267.3 204 66.2
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 1.0e-69 267.3 178 75.8
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 1.4e-69 266.9 223 61.9
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 3.0e-69 265.8 204 66.7
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 3.0e-69 265.8 222 62.6
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 4.0e-69 265.4 221 62.0
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 4.0e-69 265.4 217 62.2
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 5.2e-69 265.0 204 64.7
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 6.8e-69 264.6 218 63.3
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 1.5e-68 263.5 217 62.2
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 2.0e-68 263.1 222 63.1
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 3.4e-68 262.3 136 96.3
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 3.4e-68 262.3 217 63.6
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 5.7e-68 261.5 222 61.7
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 7.5e-68 261.2 223 61.0
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 1.3e-67 260.4 217 62.7
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 2.2e-67 259.6 222 60.4
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 2.2e-67 259.6 205 64.4
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 2.2e-67 259.6 204 64.7
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 2.9e-67 259.2 204 63.7
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 2.9e-67 259.2 205 64.9
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 3.7e-67 258.8 216 62.0
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 3.7e-67 258.8 226 60.2
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 3.7e-67 258.8 204 65.2
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 4.9e-67 258.5 204 62.7
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 4.9e-67 258.5 203 66.0
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 6.4e-67 258.1 215 62.3
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 1.1e-66 257.3 217 59.9
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 1.4e-66 256.9 204 64.2
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 2.4e-66 256.1 205 63.9
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 4.1e-66 255.4 205 63.4
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 4.1e-66 255.4 205 63.4
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 4.1e-66 255.4 207 61.4
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 5.4e-66 255.0 204 62.7
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 7.0e-66 254.6 203 62.1
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 9.2e-66 254.2 205 63.9
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 1.2e-65 253.8 204 61.3
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 2.0e-65 253.1 205 62.9
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 2.7e-65 252.7 205 62.9
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 2.7e-65 252.7 208 63.0
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 3.5e-65 252.3 204 63.2
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 3.5e-65 252.3 203 63.1
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 3.5e-65 252.3 205 62.9
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 2.3e-64 249.6 201 61.2
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 2.1e-62 243.0 220 56.4
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 8.9e-61 237.7 226 53.5
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 9.8e-60 234.2 202 57.4
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 4.6e-57 225.3 229 51.5
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 7.8e-57 224.6 120 93.3
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 3.0e-56 222.6 195 59.5
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 4.3e-55 218.8 253 48.6
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 3.5e-49 199.1 233 47.2
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 6.0e-49 198.4 179 58.1
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 2.3e-45 186.4 204 48.5
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 1.6e-41 173.7 209 44.0
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.9e-40 169.1 203 44.3
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 7.6e-36 154.8 186 44.1
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 2.4e-34 149.8 119 67.2
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 5.4e-34 148.7 111 67.6
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 9.6e-31 137.9 169 45.0
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 9.0e-29 131.3 112 59.8
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 1.1e-26 124.4 180 39.4
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.4e-26 123.2 194 38.7
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 1.3e-24 117.5 212 40.1
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 1.8e-24 117.1 107 56.1
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 2.3e-24 116.7 114 50.9
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 3.0e-24 116.3 110 53.6
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 1.5e-23 114.0 89 71.9
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 7.4e-23 111.7 231 34.2
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 6.2e-22 108.6 86 60.5
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 1.5e-20 104.0 73 69.9
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 1.6e-17 94.0 112 41.1
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.1e-17 93.6 65 64.6
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 2.7e-17 93.2 76 69.7
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 1.8e-16 90.5 97 58.8
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 2.8e-14 83.2 210 33.3
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 6.2e-14 82.0 50 82.0
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 3.4e-12 76.3 41 95.1
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 2.9e-11 73.2 49 67.3


User provided reference genes

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