Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G177000 Glycine max HOM05D007298 ORTHO05D009226 2.8e-144 515.4 281 100.0
Glyma.07G199400 Glycine max HOM05D007298 ORTHO05D009226 2.5e-108 396.0 284 83.5
Phvul.002G230700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 1.1e-95 354.0 287 73.2
VMungo0251G1522 Vigna mungo HOM05D007298 ORTHO05D009226 1.5e-94 350.1 286 73.1
Lj4g0005920 Lotus japonicus HOM05D007298 ORTHO05D009226 5.7e-81 305.1 288 67.0
Psat7g113280 Pisum sativum HOM05D007298 ORTHO05D009226 2.7e-75 286.2 299 62.9
TPR.G16338 Trifolium pratense HOM05D007298 ORTHO05D009226 3.6e-75 285.8 300 62.0
Lalb_Chr16g0383911 Lupinus albus HOM05D007298 ORTHO05D009226 2.0e-73 280.0 299 61.9
Medtr4g088515 Medicago truncatula HOM05D000062 ORTHO05D000043 7.5e-73 278.1 290 62.8
arahy.Tifrunner.gnm1.ann1.IS7ZQD Arachis hypogaea HOM05D002349 ORTHO05D002464 1.2e-70 270.8 273 62.6
arahy.Tifrunner.gnm1.ann1.MB6W4F Arachis hypogaea HOM05D002349 ORTHO05D002464 1.2e-70 270.8 273 62.6
Lalb_Chr05g0218531 Lupinus albus HOM05D007298 ORTHO05D009226 1.2e-70 270.8 292 59.2
Lalb_Chr09g0327771 Lupinus albus HOM05D007298 ORTHO05D009226 1.7e-69 266.9 299 58.9
Ca_18576_v3 Cicer arietinum L. HOM05D007298 ORTHO05D009226 2.9e-69 266.2 287 61.0
COL.COLO4_37432 Corchorus olitorius HOM05D007298 ORTHO05D009226 2.7e-62 243.0 295 51.2
Cfa009528 Carpinus fangiana HOM05D007298 ORTHO05D009226 5.9e-62 241.9 290 54.1
CiPaw.13G179900 Carya illinoinensis HOM05D007298 ORTHO05D009226 6.6e-61 238.4 290 54.1
Thecc.03G118900 Theobroma cacao HOM05D007298 ORTHO05D009226 5.6e-60 235.3 300 52.0
Gohir.A12G186800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 9.8e-57 224.6 298 51.0
Gohir.D12G189800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 1.3e-56 224.2 298 50.7
Hma1.2p1_1436F.1_g283160 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 3.7e-56 222.6 286 51.4
Gorai.008G203600 Gossypium raimondii HOM05D007298 ORTHO05D009226 8.3e-56 221.5 298 50.0
CsaV3_1G001220 Cucumis sativus L. HOM05D007298 ORTHO05D009226 1.8e-55 220.3 232 56.5
Potri.001G001000 Populus trichocarpa HOM05D007298 ORTHO05D009226 4.1e-55 219.2 292 50.0
Duzib205G1649 Durio zibethinus HOM05D007298 ORTHO05D009226 9.2e-55 218.0 296 49.3
Sed0017427 Sechium edule HOM05D007298 ORTHO05D009226 9.2e-55 218.0 232 55.6
MELO3C026268.2 Cucumis melo HOM05D007298 ORTHO05D009226 2.0e-54 216.9 232 55.6
Sabra01G0000900 Salix brachista HOM05D007298 ORTHO05D009226 3.5e-54 216.1 302 46.7
ClCG06G017280 Citrullus lanatus HOM05D007298 ORTHO05D009226 6.0e-54 215.3 281 48.4
MBI13_g02430_MAGBIO Magnolia biondii HOM05D007298 ORTHO05D009226 1.0e-53 214.5 301 48.8
CSS0015764 Camellia sinensis var. sinensis HOM05D007298 ORTHO05D009226 2.3e-53 213.4 273 48.4
vmacro16084 Vaccinium macrocarpon HOM05D007298 ORTHO05D009226 3.9e-53 212.6 289 49.8
Haze_22918 Corylus avellana HOM05D007298 ORTHO05D009226 1.1e-52 211.1 287 49.8
QL01p007822 Quercus lobata HOM05D007298 ORTHO05D009226 1.1e-52 211.1 271 50.6
Actinidia30606 Actinidia chinensis HOM05D007298 ORTHO05D009226 1.5e-52 210.7 283 47.3
TAR623G1587 Trochodendron aralioides HOM05D007298 ORTHO05D009226 1.9e-52 210.3 290 47.6
TWI32G0891 Tripterygium wilfordii HOM05D007298 ORTHO05D009226 8.0e-51 204.9 264 51.1
Peaxi162Scf00128g01770 Petunia axillaris HOM05D007298 ORTHO05D009226 3.1e-50 203.0 265 47.9
Aqoxy2G04036 Aquilegia oxysepala HOM05D007298 ORTHO05D009226 5.8e-49 198.7 295 46.8
Nn2g15906 Nelumbo nucifera HOM05D007298 ORTHO05D009226 8.3e-48 194.9 260 49.6
Nn7g35796 Nelumbo nucifera HOM05D007298 ORTHO05D009226 8.3e-48 194.9 307 45.0
PGR119G1464 Punica granatum HOM05D007298 ORTHO05D009226 3.2e-47 193.0 280 48.2
Cc11_g17470 Coffea canephora HOM05D007298 ORTHO05D009226 1.2e-46 191.0 293 43.7
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.0e-46 190.3 292 43.8
Rhsim12G0097800 Rhododendron simsii HOM05D007298 ORTHO05D009226 3.5e-46 189.5 284 46.1
Ciclev10017525m.g Citrus clementina HOM05D007298 ORTHO05D009226 7.8e-46 188.3 257 49.4
MD11G1000700 Malus domestica HOM05D007298 ORTHO05D009226 3.0e-45 186.4 280 45.7
PGSC0003DMG400025413 Solanum tuberosum HOM05D007298 ORTHO05D009226 1.9e-44 183.7 284 43.3
Nitab4.5_0008442g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.5e-44 183.3 289 41.9
Dinv31519 Davidia involucrata HOM05D007298 ORTHO05D009226 1.2e-43 181.0 226 52.7
Sopen05g018720 Solanum pennellii HOM05D007298 ORTHO05D009226 3.6e-43 179.5 267 43.4
Manes.15G111000 Manihot esculenta HOM05D007298 ORTHO05D009226 6.2e-43 178.7 232 50.9
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 1.8e-42 177.2 275 43.3
FAN16G2589 Fragaria x ananassa HOM05D007298 ORTHO05D009226 2.3e-42 176.8 293 42.7
Migut.K01030 Erythranthe guttata HOM05D007298 ORTHO05D009226 3.1e-42 176.4 226 48.2
Duzib084G1143 Durio zibethinus HOM05D007298 ORTHO05D009226 4.0e-42 176.0 197 55.3
FvH4_3g45980 Fragaria vesca HOM05D007298 ORTHO05D009226 4.0e-42 176.0 292 42.8
RcHm_v2.0_Chr5g0084091 Rosa chinensis HOM05D007298 ORTHO05D009226 5.2e-42 175.6 309 43.4
EL10Ac4g07728 Beta vulgaris HOM05D007298 ORTHO05D009226 3.4e-41 172.9 243 46.9
Solyc05g024020.1 Solanum lycopersicum HOM05D007298 ORTHO05D009226 7.5e-41 171.8 263 43.3
AUR62008624 Chenopodium quinoa HOM05D007298 ORTHO05D009226 9.9e-41 171.4 244 47.5
Eucgr.J01725 Eucalyptus grandis HOM05D007298 ORTHO05D009226 9.9e-41 171.4 283 43.8
Sc05g0003880 Simmondsia chinensis HOM05D007298 ORTHO05D009226 1.7e-40 170.6 253 46.6
Prupe.6G001000 Prunus persica HOM05D007298 ORTHO05D009226 2.2e-40 170.2 327 40.1
Actinidia09612 Actinidia chinensis HOM05D007298 ORTHO05D009226 4.1e-39 166.0 272 43.0
AUR62033147 Chenopodium quinoa HOM05D007298 ORTHO05D009226 5.4e-39 165.6 238 47.1
FAN11G2203 Fragaria x ananassa HOM05D007298 ORTHO05D009226 5.1e-37 159.1 282 41.1
Glyma.15G076400 Glycine max HOM05D007298 ORTHO05D009226 8.6e-37 158.3 215 54.4
FAN25G2175 Fragaria x ananassa HOM05D007298 ORTHO05D009226 1.5e-36 157.5 285 41.4
FAN21G1139 Fragaria x ananassa HOM05D007298 ORTHO05D009226 1.9e-36 157.1 283 41.0
Sed0020092 Sechium edule HOM05D007298 ORTHO05D009226 7.3e-36 155.2 212 48.6
Hma1.2p1_0459F.1_g157260 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 3.6e-35 152.9 235 46.0
Ah.08g213460 Amaranthus hybridus HOM05D007298 ORTHO05D009226 4.7e-35 152.5 275 43.3
Cpa.g.sc119.13 Carica papaya HOM05D007298 ORTHO05D009226 3.1e-34 149.8 284 39.4
A03p56680 Brassica napus HOM05D007298 ORTHO05D009226 5.2e-34 149.1 238 44.5
BraA03t14738Z Brassica rapa HOM05D007298 ORTHO05D009226 5.2e-34 149.1 238 44.5
Sp7g24320 Schrenkiella parvula HOM05D007298 ORTHO05D009226 8.9e-34 148.3 244 43.4
C07p54880 Brassica napus HOM05D007298 ORTHO05D009226 1.5e-33 147.5 239 43.9
BolC7t45976H Brassica oleracea HOM05D007298 ORTHO05D009226 1.5e-33 147.5 239 43.9
AT4G26415 Arabidopsis thaliana HOM05D007298 ORTHO05D009226 2.0e-33 147.1 250 43.2
HanXRQChr12g0385721 Helianthus annuus HOM05D007298 ORTHO05D009226 4.4e-33 146.0 228 43.0
DCAR_006996 Daucus carota HOM05D007298 ORTHO05D009226 5.8e-33 145.6 254 42.5
Carub.0007s1454 Capsella rubella HOM05D007298 ORTHO05D009226 7.6e-33 145.2 306 37.6
THA.LOC104813474 Tarenaya hassleriana HOM05D007298 ORTHO05D009226 9.9e-33 144.8 231 45.9
BcaC06g32750 Brassica carinata HOM05D007298 ORTHO05D009226 1.3e-32 144.4 284 39.4
Lsat_1_v5_gn_4_2201 Lactuca sativa HOM05D007298 ORTHO05D009226 1.3e-32 144.4 195 47.2
CARHR233970 Cardamine hirsuta HOM05D007298 ORTHO05D009226 2.9e-32 143.3 256 43.4
AL7G26540 Arabidopsis lyrata HOM05D007298 ORTHO05D009226 1.1e-31 141.4 237 42.6
SGA_v2.0_scaffold9G04794 Striga asiatica HOM05D002076 ORTHO05D002087 1.4e-31 141.0 241 42.7
CANSAT11G1103 Cannabis sativa HOM05D007298 ORTHO05D009226 5.4e-31 139.0 250 44.0
Thhalv10026008m.g Eutrema salsugineum HOM05D007298 ORTHO05D009226 1.2e-30 137.9 229 43.2
BcaNung02423 Brassica carinata HOM05D007298 ORTHO05D009226 3.5e-30 136.3 237 42.6
DCAR_006994 Daucus carota HOM05D007298 ORTHO05D009226 6.0e-30 135.6 243 42.4
unitig_22.g6385 Utricularia gibba HOM05D007298 ORTHO05D009226 1.0e-29 134.8 193 45.1
SalBow2G0405 Salvia bowleyana HOM05D007298 ORTHO05D009226 6.6e-29 132.1 212 42.0
SalBow2G1404 Salvia bowleyana HOM05D007298 ORTHO05D009226 6.6e-29 132.1 212 42.0
Glyma.13G237100 Glycine max HOM05D007298 ORTHO05D009226 1.9e-28 130.6 142 57.7
ATR0068G085 Amborella trichopoda HOM05D007298 ORTHO05D009226 1.6e-27 127.5 345 33.9
Phvul.006G183700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 1.6e-27 127.5 210 45.7
Zm00001eb127960 Zea mays HOM05D007298 ORTHO05D009226 1.2e-25 121.3 169 49.1
CDE07G0295 Ceratophyllum demersum HOM05D000114 ORTHO05D000038 2.1e-14 84.0 108 52.8
Nitab4.5_0000340g0060 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.7e-08 64.3 91 42.9


User provided reference genes

Program Settings