Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 3.1e-111 405.2 217 100.0
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 9.1e-103 377.1 217 94.0
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 5.9e-86 321.2 222 80.2
VMungo0251G3272 Vigna mungo HOM05D005900 ORTHO05D007306 3.0e-85 318.9 218 81.2
Phvul.002G231200 Phaseolus vulgaris HOM05D005900 ORTHO05D007306 1.8e-82 309.7 218 79.4
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 1.2e-59 233.8 228 62.7
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 2.5e-52 209.5 230 60.0
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 4.3e-52 208.8 231 56.3
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 4.0e-50 202.2 230 59.1
Lj6g0004130 Lotus japonicus HOM05D005900 ORTHO05D007306 7.9e-46 188.0 240 55.0
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 4.8e-43 178.7 221 53.8
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 8.1e-43 177.9 221 54.3
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 2.5e-36 156.4 206 50.5
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 1.6e-35 153.7 223 45.7
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 3.1e-34 149.4 222 45.5
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 2.2e-32 143.3 227 42.7
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 3.3e-28 129.4 227 42.3
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 5.7e-28 128.6 228 43.0
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 7.4e-28 128.3 227 42.3
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 2.8e-27 126.3 226 42.5
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 3.7e-27 125.9 232 40.1
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 1.8e-26 123.6 186 47.3
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 3.4e-25 119.4 217 40.1
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 4.5e-25 119.0 231 41.1
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 5.9e-25 118.6 217 40.6
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 7.6e-25 118.2 201 44.3
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 7.6e-25 118.2 223 40.4
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 1.3e-24 117.5 217 41.5
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 2.9e-24 116.3 218 41.3
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 2.9e-24 116.3 232 41.8
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 6.5e-24 115.2 216 41.7
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 8.5e-24 114.8 216 41.7
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 1.1e-23 114.4 245 38.8
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 1.4e-23 114.0 208 41.3
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 1.4e-23 114.0 253 37.5
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.9e-23 113.6 103 60.2
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 1.9e-23 113.6 241 39.0
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 2.5e-23 113.2 228 42.5
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 3.2e-23 112.8 228 40.4
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 9.3e-23 111.3 222 41.4
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 2.1e-22 110.2 221 41.2
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 2.7e-22 109.8 221 41.6
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 3.6e-22 109.4 221 41.6
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 6.1e-22 108.6 223 41.7
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 6.1e-22 108.6 216 40.7
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 7.9e-22 108.2 219 37.9
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 1.0e-21 107.8 235 37.9
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 1.0e-21 107.8 182 42.9
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 1.3e-21 107.5 236 38.1
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 1.3e-21 107.5 234 38.0
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 1.8e-21 107.1 214 40.7
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 1.8e-21 107.1 222 41.9
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 2.3e-21 106.7 228 42.5
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 6.7e-21 105.1 220 36.8
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 1.5e-20 104.0 236 37.7
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 1.5e-20 104.0 231 38.1
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 1.9e-20 103.6 221 40.3
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 4.3e-20 102.4 241 39.8
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 7.4e-20 101.7 217 35.9
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 2.2e-19 100.1 229 38.9
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 2.8e-19 99.8 237 36.7
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 2.8e-19 99.8 223 39.9
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 3.7e-19 99.4 221 39.4
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 8.2e-19 98.2 227 38.3
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 1.4e-18 97.4 203 39.9
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 2.4e-18 96.7 217 40.1
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 3.1e-18 96.3 240 37.1
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 5.3e-18 95.5 237 36.3
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 9.1e-18 94.7 208 40.9
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 9.1e-18 94.7 206 38.8
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 1.2e-17 94.4 227 37.0
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 1.2e-17 94.4 227 37.0
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 1.2e-17 94.4 197 39.6
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 1.5e-17 94.0 227 37.0
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 1.5e-17 94.0 221 39.4
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 2.0e-17 93.6 188 39.4
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 2.6e-17 93.2 281 32.0
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 3.4e-17 92.8 212 37.7
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 7.7e-17 91.7 220 38.6
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 1.0e-16 91.3 213 37.1
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 2.2e-16 90.1 202 34.7
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 2.2e-16 90.1 230 33.9
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 2.9e-16 89.7 244 34.4
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 6.5e-16 88.6 165 38.8
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 6.5e-16 88.6 209 34.9
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 6.5e-16 88.6 237 35.4
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 1.9e-15 87.0 229 34.9
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 1.6e-14 84.0 217 35.0
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 1.6e-14 84.0 231 34.2
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 1.6e-14 84.0 184 38.0
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 3.6e-14 82.8 188 39.4
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 1.8e-13 80.5 217 34.6
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 3.9e-13 79.3 225 33.8
CSS0033783 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 5.1e-13 79.0 160 41.9
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 5.7e-12 75.5 210 34.8
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 9.7e-12 74.7 213 33.8
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 9.7e-12 74.7 207 37.2
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 1.7e-11 73.9 210 34.3
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 2.2e-11 73.6 207 36.2
Aqoxy83s001 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 2.8e-11 73.2 160 35.6
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 2.8e-11 73.2 210 33.3
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 2.8e-11 73.2 210 33.3
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 2.8e-11 73.2 208 35.1
Aqoxy4G03322 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 3.7e-11 72.8 160 35.0
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 1.1e-10 71.2 119 40.3
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 2.4e-10 70.1 209 36.4
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 4.1e-10 69.3 217 36.4
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 4.1e-10 69.3 211 32.7
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 4.5e-09 65.9 161 32.9
MELO3C032361.2 Cucumis melo HOM05D005900 ORTHO05D007306 4.5e-09 65.9 180 35.6
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 5.9e-09 65.5 166 35.5
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 5.0e-08 62.4 80 43.8
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 1.1e-07 61.2 202 32.2
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 1.4e-07 60.8 208 32.2
Aqoxy2G04193 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 4.2e-07 59.3 142 35.2
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 4.2e-07 59.3 211 30.3
ATR0582G041 Amborella trichopoda HOM05D005900 ORTHO05D007306 7.2e-07 58.5 217 31.8
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 2.7e-06 56.6 164 30.5


User provided reference genes

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