Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G175300 Glycine max HOM05D007160 ORTHO05D005331 1.2e-115 420.6 373 100.0
Glyma.07G201100 Glycine max HOM05D007160 ORTHO05D005331 3.8e-88 329.3 390 77.2
VMungo0251G1795 Vigna mungo HOM05D007160 ORTHO05D005331 9.9e-73 278.1 386 69.2
Phvul.002G232100 Phaseolus vulgaris HOM05D007160 ORTHO05D005331 1.4e-58 231.1 380 73.2
TPR.G19911 Trifolium pratense HOM05D007160 ORTHO05D005331 9.1e-42 175.3 394 50.3
Medtr4g088385 Medicago truncatula HOM05D007160 ORTHO05D005331 2.0e-41 174.1 381 49.9
Ca_18588_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 5.7e-36 156.0 358 41.9
Lj4g0028244 Lotus japonicus HOM05D007160 ORTHO05D005331 6.3e-35 152.5 391 46.8
Glyma.15G077600 Glycine max HOM05D007160 ORTHO05D005331 3.1e-34 150.2 380 43.9
Glyma.13G236100 Glycine max HOM05D007160 ORTHO05D005331 2.9e-32 143.7 379 45.4
Lalb_Chr09g0327841 Lupinus albus HOM05D007160 ORTHO05D005331 1.6e-30 137.9 387 52.2
Lj6g0014856 Lotus japonicus HOM05D007160 ORTHO05D005331 4.4e-28 129.8 383 44.6
Phvul.006G182700 Phaseolus vulgaris HOM05D007160 ORTHO05D005331 1.3e-27 128.3 379 35.9
Ca_00358_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 6.3e-27 125.9 385 37.4
Ca_30973_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 6.3e-27 125.9 385 37.4
VMungo0540G2483 Vigna mungo HOM05D007160 ORTHO05D005331 1.8e-26 124.4 376 34.0
Lalb_Chr20g0121591 Lupinus albus HOM05D007160 ORTHO05D005331 1.5e-23 114.8 352 33.5
Medtr2g014400 Medicago truncatula HOM05D007160 ORTHO05D005331 1.6e-22 111.3 341 36.4
Psat1g203080 Pisum sativum HOM05D007160 ORTHO05D005331 1.3e-19 101.7 397 31.0
Haze_06386 Corylus avellana HOM05D007160 ORTHO05D005331 4.1e-18 96.7 383 36.6
QL05p042103 Quercus lobata HOM05D007160 ORTHO05D005331 9.1e-18 95.5 84 59.5
QL05p042154 Quercus lobata HOM05D007160 ORTHO05D005331 9.1e-18 95.5 84 59.5
Cfa000523 Carpinus fangiana HOM05D007160 ORTHO05D005331 3.5e-17 93.6 349 33.8
TWI63G1823 Tripterygium wilfordii HOM05D007160 ORTHO05D005331 6.5e-16 89.4 386 41.5
arahy.Tifrunner.gnm1.ann1.AUV6LD Arachis hypogaea HOM05D007160 ORTHO05D005331 1.1e-15 88.6 410 30.0
MD05G1310400 Malus domestica HOM05D007160 ORTHO05D005331 1.9e-15 87.8 381 39.6
arahy.Tifrunner.gnm1.ann1.704E4A Arachis hypogaea HOM05D007160 ORTHO05D005331 4.7e-14 83.2 392 31.4
Dinv17351 Davidia involucrata HOM05D007160 ORTHO05D005331 1.4e-13 81.6 58 65.5
Prupe.4G052200 Prunus persica HOM05D007160 ORTHO05D005331 4.0e-13 80.1 377 36.6
TAR627G1090 Trochodendron aralioides HOM05D018497 ORTHO05D005331 4.0e-13 80.1 92 48.9
Actinidia16571 Actinidia chinensis HOM05D007160 ORTHO05D005331 2.0e-12 77.8 84 54.8
CiPaw.10G052400 Carya illinoinensis HOM05D007160 ORTHO05D005331 4.4e-12 76.6 85 54.1
Cc02_g13790 Coffea canephora HOM05D007160 ORTHO05D005331 2.2e-11 74.3 83 54.2
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 3.7e-11 73.6 61 62.3
FAN16G2322 Fragaria x ananassa HOM05D007160 ORTHO05D005331 3.7e-11 73.6 82 51.2
FAN21G2372 Fragaria x ananassa HOM05D007160 ORTHO05D005331 3.7e-11 73.6 82 52.4
Peaxi162Scf01018g00012 Petunia axillaris HOM05D007160 ORTHO05D005331 3.7e-11 73.6 82 51.2
FvH4_3g08671 Fragaria vesca HOM05D007160 ORTHO05D005331 4.8e-11 73.2 82 51.2
FAN11G0877 Fragaria x ananassa HOM05D007160 ORTHO05D005331 4.8e-11 73.2 82 51.2
Nitab4.5_0004359g0050 Nicotiana tabacum HOM05D007160 ORTHO05D005331 4.8e-11 73.2 83 51.8
Rhsim13G0180200 Rhododendron simsii HOM05D007160 ORTHO05D005331 8.3e-11 72.4 83 51.8
SalBow8G4606 Salvia bowleyana HOM05D007160 ORTHO05D005331 8.3e-11 72.4 81 48.1
Nitab4.5_0001955g0170 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.1e-10 72.0 77 54.5
Psat7g116440 Pisum sativum HOM05D007160 ORTHO05D005331 1.1e-10 72.0 82 56.1
Prupe.4G052000 Prunus persica HOM05D007160 ORTHO05D005331 1.4e-10 71.6 87 52.9
Potri.004G048301 Populus trichocarpa HOM05D007160 ORTHO05D005331 1.8e-10 71.2 93 48.4
CSS0024231 Camellia sinensis var. sinensis HOM05D007160 ORTHO05D005331 2.4e-10 70.9 90 51.1
CiPaw.09G063200 Carya illinoinensis HOM05D007160 ORTHO05D005331 3.1e-10 70.5 86 52.3
Sed0008189 Sechium edule HOM05D007160 ORTHO05D005331 3.1e-10 70.5 91 53.8
MD10G1289700 Malus domestica HOM05D007160 ORTHO05D005331 4.1e-10 70.1 93 50.5
Sabra04G0030300 Salix brachista HOM05D007160 ORTHO05D005331 4.1e-10 70.1 93 49.5
EL10Ac8g20435 Beta vulgaris HOM05D007160 ORTHO05D005331 5.4e-10 69.7 96 55.2
Gohir.D10G028200 Gossypium hirsutum HOM05D007160 ORTHO05D005331 9.1e-10 68.9 82 45.1
Potri.011G057500 Populus trichocarpa HOM05D007160 ORTHO05D005331 9.1e-10 68.9 94 46.8
SalBow8G2878 Salvia bowleyana HOM05D007160 ORTHO05D005331 9.1e-10 68.9 373 35.9
SalBow8G5472 Salvia bowleyana HOM05D007160 ORTHO05D005331 9.1e-10 68.9 373 35.7
DCAR_004048 Daucus carota HOM05D007160 ORTHO05D005331 1.2e-09 68.6 86 48.8
PGSC0003DMG400031775 Solanum tuberosum HOM05D007160 ORTHO05D005331 1.2e-09 68.6 77 54.5
Duzib192G1060 Durio zibethinus HOM05D007160 ORTHO05D005331 2.0e-09 67.8 396 25.8
COL.COLO4_35512 Corchorus olitorius HOM05D008876 ORTHO05D010747 3.5e-09 67.0 89 47.2
Nitab4.5_0001375g0140 Nicotiana tabacum HOM05D007160 ORTHO05D005331 4.5e-09 66.6 84 48.8
Nitab4.5_0003341g0030 Nicotiana tabacum HOM05D007160 ORTHO05D005331 4.5e-09 66.6 76 51.3
Gorai.009G167000 Gossypium raimondii HOM05D007160 ORTHO05D005331 5.9e-09 66.2 376 24.7
Gohir.D05G162000 Gossypium hirsutum HOM05D007160 ORTHO05D005331 7.7e-09 65.9 376 25.0
Gorai.011G030000 Gossypium raimondii HOM05D007160 ORTHO05D005331 7.7e-09 65.9 82 42.7
CAN.G529.50 Capsicum annuum HOM05D007160 ORTHO05D005331 1.0e-08 65.5 83 49.4
DCAR_008006 Daucus carota HOM05D007160 ORTHO05D005331 1.0e-08 65.5 85 49.4
Thecc.06G181500 Theobroma cacao HOM05D007160 ORTHO05D005331 1.0e-08 65.5 104 43.3
TPR.G11687 Trifolium pratense HOM05D007160 ORTHO05D005331 1.3e-08 65.1 57 59.6
Duzib235G1074 Durio zibethinus HOM05D007160 ORTHO05D005331 1.7e-08 64.7 409 33.0
TAR629G2975 Trochodendron aralioides HOM05D018497 ORTHO05D021348 2.3e-08 64.3 82 43.9
MSTRG.15854 Avicennia marina HOM05D007160 ORTHO05D005331 2.9e-08 63.9 374 26.2
Nitab4.5_0001375g0150 Nicotiana tabacum HOM05D007160 ORTHO05D005331 2.9e-08 63.9 84 46.4
Manes.17G049000 Manihot esculenta HOM05D007160 ORTHO05D005331 5.0e-08 63.2 78 47.4
Nitab4.5_0000516g0060 Nicotiana tabacum HOM05D007160 ORTHO05D005331 5.0e-08 63.2 84 46.4
BcaB03g13928 Brassica carinata HOM05D009159 ORTHO05D005331 6.6e-08 62.8 83 49.4
PGSC0003DMG400022807 Solanum tuberosum HOM05D007160 ORTHO05D005331 6.6e-08 62.8 75 53.3
TAR624G0339 Trochodendron aralioides HOM05D007160 ORTHO05D005331 6.6e-08 62.8 87 46.0
C03p75110 Brassica napus HOM05D009159 ORTHO05D005331 8.6e-08 62.4 76 52.6
Peaxi162Scf00926g00031 Petunia axillaris HOM05D007160 ORTHO05D005331 8.6e-08 62.4 77 49.4
Sed0007130 Sechium edule HOM05D007160 ORTHO05D005331 8.6e-08 62.4 84 47.6
Sopen02g022600 Solanum pennellii HOM05D007160 ORTHO05D005331 8.6e-08 62.4 84 52.4
Thhalv10017182m.g Eutrema salsugineum HOM05D009159 ORTHO05D005331 1.5e-07 61.6 73 50.7
Hma1.2p1_0558F.1_g178530 Hydrangea macrophylla HOM05D007160 ORTHO05D005331 1.5e-07 61.6 388 35.8
PGR042G2677 Punica granatum HOM05D007160 ORTHO05D005331 1.5e-07 61.6 96 42.7
Thhalv10008366m.g Eutrema salsugineum HOM05D009159 ORTHO05D005331 1.9e-07 61.2 80 45.0
Nitab4.5_0000516g0090 Nicotiana tabacum HOM05D007160 ORTHO05D005331 2.5e-07 60.8 84 45.2
Peaxi162Scf00031g00084 Petunia axillaris HOM05D007160 ORTHO05D005331 2.5e-07 60.8 386 39.4
Nitab4.5_0006098g0020 Nicotiana tabacum HOM05D007160 ORTHO05D005331 3.3e-07 60.5 78 50.0
Sp4g16260 Schrenkiella parvula HOM05D009159 ORTHO05D005331 3.3e-07 60.5 74 51.4
Solyc02g077710.1 Solanum lycopersicum HOM05D007160 ORTHO05D005331 3.3e-07 60.5 84 51.2
Dinv01518 Davidia involucrata HOM05D008876 ORTHO05D010747 4.2e-07 60.1 80 46.2
Duzib132G0209 Durio zibethinus HOM05D008876 ORTHO05D010747 5.5e-07 59.7 70 50.0
Duzib132G0342 Durio zibethinus HOM05D008876 ORTHO05D010747 5.5e-07 59.7 70 50.0
Ciclev10016096m.g Citrus clementina HOM05D008876 ORTHO05D010747 7.2e-07 59.3 81 39.5
Sc17g0005960 Simmondsia chinensis HOM05D028926 ORTHO05D005331 7.2e-07 59.3 95 43.2
Potri.007G137001 Populus trichocarpa HOM05D008876 ORTHO05D010747 9.5e-07 58.9 86 41.9
Gohir.A10G027800 Gossypium hirsutum HOM05D007160 ORTHO05D005331 1.6e-06 58.2 393 33.8
SalBow7G0780 Salvia bowleyana HOM05D007160 ORTHO05D005331 1.6e-06 58.2 89 42.7
MSTRG.13207 Avicennia marina HOM05D007160 ORTHO05D005331 2.8e-06 57.4 73 46.6
Oeu001099.1 Olea europaea HOM05D007160 ORTHO05D005331 2.8e-06 57.4 72 40.3
SalBow7G0182 Salvia bowleyana HOM05D007160 ORTHO05D005331 2.8e-06 57.4 89 42.7
AL1G42030 Arabidopsis lyrata HOM05D009159 ORTHO05D005331 3.6e-06 57.0 79 45.6
BcaB03g12106 Brassica carinata HOM05D009159 ORTHO05D005331 3.6e-06 57.0 82 46.3
Duzib160G0215 Durio zibethinus HOM05D007160 ORTHO05D005331 3.6e-06 57.0 381 25.5
ECA236G4287 Erigeron canadensis HOM05D007160 ORTHO05D005331 4.7e-06 56.6 80 43.8
Nitab4.5_0000516g0070 Nicotiana tabacum HOM05D007160 ORTHO05D005331 4.7e-06 56.6 82 42.7
CARHR027910 Cardamine hirsuta HOM05D009159 ORTHO05D005331 6.1e-06 56.2 78 47.4
Nitab4.5_0001375g0120 Nicotiana tabacum HOM05D007160 ORTHO05D005331 6.1e-06 56.2 84 41.7


User provided reference genes

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