Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 1.0e-227 793.5 536 100.0
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 3.9e-171 605.5 539 75.9
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 2.3e-102 377.1 541 47.3
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 5.9e-95 352.4 567 44.4
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 2.7e-47 194.1 547 32.0
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 2.6e-42 177.6 587 39.0
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 2.9e-41 174.1 578 29.6
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 1.1e-40 172.2 548 34.9
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 1.9e-40 171.4 532 30.5
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 4.6e-39 166.8 559 38.5
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 1.9e-37 161.4 536 30.2
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 1.6e-36 158.3 553 32.4
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 9.0e-35 152.5 170 52.4
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 2.9e-33 147.5 216 41.7
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 1.6e-31 141.7 286 37.1
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 3.6e-31 140.6 326 35.6
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 7.9e-31 139.4 286 36.4
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.3e-30 137.9 281 37.0
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 6.7e-30 136.3 550 28.7
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 6.7e-30 136.3 287 36.9
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 8.8e-30 136.0 525 31.8
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 8.8e-30 136.0 123 57.7
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 1.1e-29 135.6 269 37.2
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 1.1e-29 135.6 523 28.1
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 1.5e-29 135.2 530 30.6
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 2.5e-29 134.4 127 52.0
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.5e-29 134.4 262 37.8
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 2.5e-29 134.4 542 31.7
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 5.7e-29 133.3 534 35.8
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 5.7e-29 133.3 535 27.1
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 9.7e-29 132.5 189 39.2
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 9.7e-29 132.5 287 37.6
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 1.3e-28 132.1 529 34.8
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 2.8e-28 131.0 308 32.1
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 3.7e-28 130.6 552 27.4
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 4.8e-28 130.2 529 35.2
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 1.1e-27 129.0 210 40.0
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 1.8e-27 128.3 543 29.7
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 2.4e-27 127.9 542 27.9
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 4.1e-27 127.1 569 25.3
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 9.1e-27 125.9 551 28.3
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 4.5e-26 123.6 525 27.6
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 5.9e-26 123.2 530 32.6
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 7.7e-26 122.9 182 42.9
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 1.3e-25 122.1 99 55.6
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.7e-25 121.7 127 48.0
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 1.7e-25 121.7 397 29.7
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 2.2e-25 121.3 250 32.8
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 2.9e-25 120.9 245 33.5
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 2.9e-25 120.9 519 27.0
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 3.8e-25 120.6 558 26.2
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 6.5e-25 119.8 245 33.5
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 6.5e-25 119.8 277 33.6
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 6.5e-25 119.8 207 42.0
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 8.5e-25 119.4 155 45.8
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 8.5e-25 119.4 314 34.4
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 8.5e-25 119.4 215 37.7
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 1.1e-24 119.0 527 32.4
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 1.1e-24 119.0 137 48.2
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.1e-24 119.0 165 45.5
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 1.4e-24 118.6 537 34.3
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 1.9e-24 118.2 204 38.2
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 1.9e-24 118.2 529 26.8
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 3.2e-24 117.5 527 25.2
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 3.2e-24 117.5 601 26.3
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 4.2e-24 117.1 248 33.9
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 5.5e-24 116.7 519 25.0
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 5.5e-24 116.7 248 34.3
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 5.5e-24 116.7 522 34.9
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 7.2e-24 116.3 576 24.7
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 9.4e-24 115.9 534 32.2
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 9.4e-24 115.9 383 29.8
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 9.4e-24 115.9 126 48.4
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 9.4e-24 115.9 248 32.7
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 3.6e-23 114.0 533 28.0
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 3.6e-23 114.0 533 28.0
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 3.6e-23 114.0 536 26.9
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 6.1e-23 113.2 533 26.6
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 1.0e-22 112.5 190 41.1
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 1.8e-22 111.7 536 25.9
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 2.3e-22 111.3 556 27.5
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.3e-22 111.3 269 31.6
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.3e-22 111.3 302 30.8
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.3e-22 111.3 302 30.8
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 3.0e-22 110.9 549 25.9
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 5.1e-22 110.2 537 26.6
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 6.7e-22 109.8 123 51.2
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 2.6e-21 107.8 111 48.6
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 3.3e-21 107.5 552 26.3
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 4.4e-21 107.1 318 29.2
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 4.4e-21 107.1 535 25.6
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 7.4e-21 106.3 198 36.4
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 9.7e-21 105.9 534 24.9
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 1.3e-20 105.5 274 31.0
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 1.3e-20 105.5 128 46.9
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 2.2e-20 104.8 207 38.2
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 2.8e-20 104.4 539 25.6
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 2.8e-20 104.4 545 25.1
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 3.7e-20 104.0 530 26.6
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 3.7e-20 104.0 127 48.0
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 6.3e-20 103.2 231 34.2
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 8.2e-20 102.8 537 25.9
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 8.2e-20 102.8 537 25.9
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.1e-19 102.4 99 51.5
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 1.4e-19 102.1 530 30.2
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 2.4e-19 101.3 229 32.3
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 6.9e-19 99.8 102 46.1
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 9.1e-19 99.4 280 34.6
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 1.5e-18 98.6 530 30.4
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 1.5e-18 98.6 560 25.5
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 2.0e-18 98.2 253 31.6
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 2.0e-18 98.2 207 37.7
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 2.6e-18 97.8 545 24.2
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 4.5e-18 97.1 200 33.0
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 5.9e-18 96.7 124 44.4
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 7.7e-18 96.3 532 31.0
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 7.7e-18 96.3 192 37.0
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.3e-17 95.5 148 39.2
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 2.2e-17 94.7 207 37.2
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 2.2e-17 94.7 136 41.2
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 6.5e-17 93.2 551 25.8
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.1e-16 92.4 132 43.2
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 1.4e-16 92.0 541 25.1
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 2.5e-16 91.3 523 26.6
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 3.2e-16 90.9 369 27.6
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 3.2e-16 90.9 279 31.5
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.2e-15 89.0 242 34.3
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 2.7e-15 87.8 53 81.1
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 3.6e-15 87.4 99 43.4
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 8.0e-15 86.3 174 32.8
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 1.0e-14 85.9 377 28.9
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 6.7e-14 83.2 106 37.7
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 2.6e-13 81.3 103 42.7
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 1.3e-12 79.0 53 69.8
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 2.8e-12 77.8 103 41.7
CiPaw.01G189200 Carya illinoinensis HOM05D004833 ORTHO05D005671 3.1e-11 74.3 56 62.5
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 2.0e-10 71.6 114 38.6
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 2.6e-10 71.2 101 35.6
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 2.2e-09 68.2 52 63.5
A06p04460 Brassica napus HOM05D010442 ORTHO05D010690 5.0e-09 67.0 56 53.6
BcaC08g43040 Brassica carinata HOM05D010442 ORTHO05D010690 6.5e-09 66.6 56 53.6
C06p03000 Brassica napus HOM05D010442 ORTHO05D010690 1.9e-08 65.1 55 52.7
BolC6t35423H Brassica oleracea HOM05D010442 ORTHO05D010690 1.9e-08 65.1 55 52.7
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 2.5e-08 64.7 96 39.6
BcaC01g04549 Brassica carinata HOM05D004833 ORTHO05D005671 2.7e-07 61.2 53 52.8
Lj6P658T32 Lonicera japonica HOM05D004833 ORTHO05D005671 3.0e-06 57.8 58 50.0
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 6.7e-06 56.6 40 60.0


User provided reference genes

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