Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G166400 Glycine max HOM05D005333 ORTHO05D005776 1.9e-50 202.2 100 100.0
Glyma.17G114100 Glycine max HOM05D005333 ORTHO05D005776 3.4e-44 181.4 100 91.0
Phvul.003G165300 Phaseolus vulgaris HOM05D005333 ORTHO05D005776 1.3e-40 169.5 100 82.0
VMungo1215G0455 Vigna mungo HOM05D005333 ORTHO05D005776 2.8e-38 161.8 101 82.2
Lj4g0022056 Lotus japonicus HOM05D005333 ORTHO05D005776 2.1e-33 145.6 100 74.0
Lalb_Chr12g0197971 Lupinus albus HOM05D005333 ORTHO05D005776 8.7e-32 140.2 100 71.0
arahy.Tifrunner.gnm1.ann1.83L7WY Arachis hypogaea HOM05D005333 ORTHO05D005776 5.6e-31 137.5 101 68.3
arahy.Tifrunner.gnm1.ann1.U3NP9C Arachis hypogaea HOM05D005333 ORTHO05D005776 5.6e-31 137.5 101 68.3
Lj4g0001981 Lotus japonicus HOM05D005333 ORTHO05D005776 4.8e-30 134.4 100 69.0
Medtr4g114610 Medicago truncatula HOM05D005333 ORTHO05D005776 8.1e-30 133.7 102 66.7
Psat4g038680 Pisum sativum HOM05D005333 ORTHO05D005776 9.0e-29 130.2 102 66.7
TPR.G26498 Trifolium pratense HOM05D005333 ORTHO05D005776 1.3e-27 126.3 102 64.7
Lalb_Chr07g0179001 Lupinus albus HOM05D005333 ORTHO05D005776 4.9e-27 124.4 100 64.0
QL02p088661 Quercus lobata HOM05D005333 ORTHO05D005776 5.4e-26 120.9 96 63.5
ClCG06G011210 Citrullus lanatus HOM05D005333 ORTHO05D005776 9.3e-26 120.2 96 63.5
CsaV3_1G030220 Cucumis sativus L. HOM05D005333 ORTHO05D005776 6.0e-25 117.5 96 61.5
Cfa003386 Carpinus fangiana HOM05D005333 ORTHO05D005776 1.3e-24 116.3 96 60.4
Eucgr.C01530 Eucalyptus grandis HOM05D005333 ORTHO05D005776 1.3e-24 116.3 96 60.4
Thecc.09G127500 Theobroma cacao HOM05D005333 ORTHO05D005776 2.3e-24 115.5 96 58.3
CiPaw.03G244900 Carya illinoinensis HOM05D005333 ORTHO05D005776 8.7e-24 113.6 99 58.6
Aqoxy7G03689 Aquilegia oxysepala HOM05D005333 ORTHO05D005776 1.9e-23 112.5 98 60.2
Manes.14G133000 Manihot esculenta HOM05D005333 ORTHO05D005776 1.9e-23 112.5 96 60.4
Cpa.g.sc46.7 Carica papaya HOM05D005333 ORTHO05D005776 3.3e-23 111.7 96 60.4
GSVIVG01015545001 Vitis vinifera HOM05D005333 ORTHO05D005776 3.3e-23 111.7 96 58.3
Sed0012264 Sechium edule HOM05D005333 ORTHO05D005776 4.3e-23 111.3 99 59.6
Eucgr.C01196 Eucalyptus grandis HOM05D005333 ORTHO05D005776 5.6e-23 110.9 98 58.2
vmacro20565 Vaccinium macrocarpon HOM05D005333 ORTHO05D005776 1.3e-22 109.8 96 56.2
Ciclev10010005m.g Citrus clementina HOM05D005333 ORTHO05D005776 1.6e-22 109.4 97 59.8
Dinv41504 Davidia involucrata HOM05D005333 ORTHO05D005776 1.6e-22 109.4 89 60.7
Potri.018G131000 Populus trichocarpa HOM05D005333 ORTHO05D005776 2.8e-22 108.6 96 60.4
RcHm_v2.0_Chr2g0088271 Rosa chinensis HOM05D005333 ORTHO05D005776 2.8e-22 108.6 99 56.6
Haze_25566 Corylus avellana HOM05D005333 ORTHO05D005776 3.6e-22 108.2 90 58.9
TWI34G1084 Tripterygium wilfordii HOM05D005333 ORTHO05D005776 3.6e-22 108.2 96 54.2
Dinv36517 Davidia involucrata HOM05D005333 ORTHO05D005776 4.8e-22 107.8 96 58.3
PGR102G2059 Punica granatum HOM05D005333 ORTHO05D005776 4.8e-22 107.8 106 52.8
Duzib168G0900 Durio zibethinus HOM05D005333 ORTHO05D005776 8.1e-22 107.1 96 57.3
Prupe.7G244000 Prunus persica HOM05D005333 ORTHO05D005776 8.1e-22 107.1 102 54.9
FvH4_1g03150 Fragaria vesca HOM05D005333 ORTHO05D005776 1.1e-21 106.7 99 54.5
FAN19G1630 Fragaria x ananassa HOM05D005333 ORTHO05D005776 1.1e-21 106.7 99 54.5
Duzib187G1708 Durio zibethinus HOM05D005333 ORTHO05D005776 1.8e-21 105.9 96 53.1
Atru.chr1.953 Acer truncatum HOM05D005333 ORTHO05D005776 2.4e-21 105.5 96 53.1
Gohir.A06G055500 Gossypium hirsutum HOM05D005333 ORTHO05D005776 2.4e-21 105.5 97 55.7
Gorai.010G063500 Gossypium raimondii HOM05D005333 ORTHO05D005776 2.4e-21 105.5 97 55.7
Potri.006G069000 Populus trichocarpa HOM05D005333 ORTHO05D005776 2.4e-21 105.5 96 58.3
Prupe.7G066500 Prunus persica HOM05D005333 ORTHO05D005776 6.9e-21 104.0 102 53.9
FAN26G1318 Fragaria x ananassa HOM05D005333 ORTHO05D005776 9.0e-21 103.6 98 53.1
CANSAT11G0814 Cannabis sativa HOM05D005333 ORTHO05D005776 2.0e-20 102.4 96 56.2
Gohir.D06G054400 Gossypium hirsutum HOM05D005333 ORTHO05D005776 2.0e-20 102.4 97 54.6
Hma1.2p1_0018F.1_g012330 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 2.0e-20 102.4 97 56.7
AL6G31740 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 3.4e-20 101.7 98 55.1
DCAR_020918 Daucus carota HOM05D005333 ORTHO05D005776 3.4e-20 101.7 96 56.2
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 3.4e-20 101.7 98 52.0
Carub.0006s1858 Capsella rubella HOM05D005333 ORTHO05D005776 4.5e-20 101.3 98 54.1
AT5G20180 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 7.6e-20 100.5 98 55.1
AUR62013349 Chenopodium quinoa HOM05D005333 ORTHO05D005776 7.6e-20 100.5 96 53.1
DCAR_014887 Daucus carota HOM05D005333 ORTHO05D005776 9.9e-20 100.1 96 54.2
EL10Ac8g18671 Beta vulgaris HOM05D005333 ORTHO05D005776 1.3e-19 99.8 96 52.1
THA.LOC104799642 Tarenaya hassleriana HOM05D005333 ORTHO05D005776 1.7e-19 99.4 97 52.6
Thhalv10015097m.g Eutrema salsugineum HOM05D005333 ORTHO05D005776 2.9e-19 98.6 98 52.0
Nn2g12046 Nelumbo nucifera HOM05D005333 ORTHO05D005776 3.8e-19 98.2 96 52.1
MELO3C010337.2 Cucumis melo HOM05D005333 ORTHO05D005776 4.9e-19 97.8 85 58.8
MD02G1030500 Malus domestica HOM05D005333 ORTHO05D005776 6.4e-19 97.4 100 53.0
AUR62011139 Chenopodium quinoa HOM05D005333 ORTHO05D005776 8.4e-19 97.1 96 52.1
Oeu044201.1 Olea europaea HOM05D005333 ORTHO05D005776 8.4e-19 97.1 96 52.1
Cc06_g08400 Coffea canephora HOM05D005333 ORTHO05D005776 1.1e-18 96.7 100 56.0
Rhsim03G0248400 Rhododendron simsii HOM05D005333 ORTHO05D005776 1.9e-18 95.9 98 53.1
Sp6g24220 Schrenkiella parvula HOM05D005333 ORTHO05D005776 1.9e-18 95.9 98 51.0
MD15G1172100 Malus domestica HOM05D005333 ORTHO05D005776 2.4e-18 95.5 103 53.4
Migut.H01282 Erythranthe guttata HOM05D005333 ORTHO05D005776 4.2e-18 94.7 97 53.6
MBI01_g15682_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 4.2e-18 94.7 96 51.0
Aa31LG1G14430 Aethionema arabicum HOM05D005333 ORTHO05D005776 7.1e-18 94.0 97 52.6
MSTRG.12252 Avicennia marina HOM05D005333 ORTHO05D005776 7.1e-18 94.0 98 53.1
BraA03t10304Z Brassica rapa HOM05D005333 ORTHO05D005776 7.1e-18 94.0 98 50.0
C03p11490 Brassica napus HOM05D005333 ORTHO05D005776 1.2e-17 93.2 98 50.0
BolC3t13621H Brassica oleracea HOM05D005333 ORTHO05D005776 1.2e-17 93.2 98 50.0
A03p09910 Brassica napus HOM05D005333 ORTHO05D005776 1.6e-17 92.8 98 50.0
FAN23G1698 Fragaria x ananassa HOM05D005333 ORTHO05D005776 2.1e-17 92.4 122 43.4
MBI01_g45309_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 2.1e-17 92.4 96 50.0
SGA_v2.0_scaffold109G31056 Striga asiatica HOM05D005333 ORTHO05D005776 2.1e-17 92.4 97 51.5
Hund09250 Selenicereus undatus HOM05D005333 ORTHO05D005776 2.7e-17 92.0 96 49.0
Sc08g0006540 Simmondsia chinensis HOM05D005333 ORTHO05D005776 3.5e-17 91.7 96 51.0
CDE10G0227 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 1.8e-16 89.4 97 51.5
Sopen07g004160 Solanum pennellii HOM05D005333 ORTHO05D005776 3.0e-16 88.6 96 47.9
Nitab4.5_0000028g0370 Nicotiana tabacum HOM05D005333 ORTHO05D005776 3.9e-16 88.2 98 49.0
Solyc07g008270.3 Solanum lycopersicum HOM05D005333 ORTHO05D005776 3.9e-16 88.2 98 48.0
Lsat_1_v5_gn_5_31321 Lactuca sativa HOM05D005333 ORTHO05D005776 5.1e-16 87.8 110 44.5
BraA02t05559Z Brassica rapa HOM05D005333 ORTHO05D005776 6.7e-16 87.4 98 49.0
unitig_748.g8609 Utricularia gibba HOM05D005333 ORTHO05D005776 6.7e-16 87.4 100 48.0
Nitab4.5_0006661g0010 Nicotiana tabacum HOM05D005333 ORTHO05D005776 8.7e-16 87.0 98 48.0
PGSC0003DMG400019893 Solanum tuberosum HOM05D005333 ORTHO05D005776 8.7e-16 87.0 98 46.9
Actinidia40477 Actinidia chinensis HOM05D001011 ORTHO05D000851 1.1e-15 86.7 54 74.1
CDE04G2910 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 1.5e-15 86.3 96 51.0
COL.COLO4_35113 Corchorus olitorius HOM05D005333 ORTHO05D005776 1.5e-15 86.3 149 37.6
CARHR192640 Cardamine hirsuta HOM05D005333 ORTHO05D005776 1.9e-15 85.9 100 51.0
Rhsim01G0068900 Rhododendron simsii HOM05D005333 ORTHO05D005776 1.9e-15 85.9 96 50.0
SGA_v2.0_scaffold49G18402 Striga asiatica HOM05D005333 ORTHO05D005776 1.9e-15 85.9 102 50.0
Hma1.2p1_0931F.1_g238060 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 4.3e-15 84.7 50 78.0
Ciclev10010320m.g Citrus clementina HOM05D005333 ORTHO05D005776 5.6e-15 84.3 83 55.4
BcaC03g13741 Brassica carinata HOM05D005333 ORTHO05D005776 7.4e-15 84.0 98 49.0
BolC2t07023H Brassica oleracea HOM05D005333 ORTHO05D005776 7.4e-15 84.0 98 49.0
ECA246G0448 Erigeron canadensis HOM05D005333 ORTHO05D005776 9.6e-15 83.6 105 44.8
Peaxi162Scf00046g00622 Petunia axillaris HOM05D005333 ORTHO05D005776 9.6e-15 83.6 98 45.9
SalBow6G5031 Salvia bowleyana HOM05D005333 ORTHO05D005776 9.6e-15 83.6 67 62.7
CDE10G0631 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 1.3e-14 83.2 97 50.5
BcaB05g22866 Brassica carinata HOM05D005333 ORTHO05D005776 2.1e-14 82.4 99 45.5
Nn2g12039 Nelumbo nucifera HOM05D005333 ORTHO05D005776 2.8e-14 82.0 46 76.1
A02p06080 Brassica napus HOM05D005333 ORTHO05D005776 8.1e-14 80.5 98 46.9
BNapus_Darmor_BZH_scaffold_38p01760 Brassica napus HOM05D005333 ORTHO05D005776 2.4e-13 79.0 99 46.5
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 9.0e-13 77.0 46 73.9
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 2.6e-12 75.5 47 72.3
AagrBONN_evm.TU.Sc2ySwM_344.103 Anthoceros agrestis HOM05D005333 ORTHO05D005776 5.8e-12 74.3 106 41.5
AagrBONN_evm.TU.Sc2ySwM_344.112 Anthoceros agrestis HOM05D005333 ORTHO05D005776 1.7e-11 72.8 106 42.5
HanXRQChr06g0182851 Helianthus annuus HOM05D005333 ORTHO05D005776 1.4e-10 69.7 97 39.2
SGA_v2.0_scaffold3596G54365 Striga asiatica HOM05D005333 ORTHO05D005776 2.5e-10 68.9 92 44.6
CBR_g19308 Chara braunii HOM05D005333 ORTHO05D005776 4.2e-10 68.2 72 50.0
Zm00001eb212180 Zea mays HOM05D005333 ORTHO05D005776 5.5e-10 67.8 96 37.5
PRCOL_00005826 Prasinoderma coloniale HOM05D005333 ORTHO05D005776 7.1e-10 67.4 43 65.1
Mapoly0008s0076 Marchantia polymorpha HOM05D005333 ORTHO05D005776 9.3e-10 67.0 103 35.0
Pp3c15_5230 Physcomitrium patens HOM05D005333 ORTHO05D005776 3.5e-09 65.1 53 52.8
Os03g0811800 Oryza sativa ssp. japonica HOM05D005333 ORTHO05D005776 4.6e-09 64.7 96 36.5
SMO116G0310 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 4.6e-09 64.7 65 49.2
Sabra18G0111200 Salix brachista HOM05D002758 ORTHO05D005776 6.0e-09 64.3 101 43.6
AL5G13030 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 3.0e-08 62.0 63 55.6
Zm00001eb103590 Zea mays HOM05D001170 ORTHO05D006602 3.0e-08 62.0 43 58.1
SMO197G0073 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 6.7e-08 60.8 54 53.7
ATR0618G145 Amborella trichopoda HOM05D005333 ORTHO05D005776 1.5e-07 59.7 46 58.7
ATCG00760 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 1.9e-07 59.3 38 68.4
BolC7t41709H Brassica oleracea HOM05D005333 ORTHO05D005776 1.9e-07 59.3 38 68.4
BolSC29t60528H Brassica oleracea HOM05D005333 ORTHO05D005776 1.9e-07 59.3 38 68.4
BolSC29t60609H Brassica oleracea HOM05D005333 ORTHO05D005776 1.9e-07 59.3 38 68.4
BolSC35t60669H Brassica oleracea HOM05D005333 ORTHO05D005776 1.9e-07 59.3 38 68.4
BolSC35t60730H Brassica oleracea HOM05D005333 ORTHO05D005776 1.9e-07 59.3 38 68.4
BraA06t25383Z Brassica rapa HOM05D005333 ORTHO05D005776 1.9e-07 59.3 38 68.4
BraSC103t45446Z Brassica rapa HOM05D005333 ORTHO05D005776 1.9e-07 59.3 38 68.4
BraSC138t45554Z Brassica rapa HOM05D005333 ORTHO05D005776 1.9e-07 59.3 38 68.4
BraSC143t45636Z Brassica rapa HOM05D005333 ORTHO05D005776 1.9e-07 59.3 38 68.4
BraSC58t46440Z Brassica rapa HOM05D005333 ORTHO05D005776 1.9e-07 59.3 38 68.4
BraSC58t46501Z Brassica rapa HOM05D005333 ORTHO05D005776 1.9e-07 59.3 38 68.4
BraSC59t46571Z Brassica rapa HOM05D005333 ORTHO05D005776 1.9e-07 59.3 38 68.4
DCAR_032519 Daucus carota HOM05D005333 ORTHO05D005776 1.9e-07 59.3 38 68.4
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 1.9e-07 59.3 38 68.4
PSO548G0025 Papaver somniferum HOM05D005333 ORTHO05D005776 1.9e-07 59.3 38 68.4
PGR111G0044 Punica granatum HOM05D005333 ORTHO05D005776 1.9e-07 59.3 38 68.4
CARHR282240 Cardamine hirsuta HOM05D000964 ORTHO05D003870 4.3e-07 58.2 44 59.1
COL.COLO4_00391 Corchorus olitorius HOM05D006856 ORTHO05D008513 9.6e-07 57.0 38 65.8
Gorai.009G350300 Gossypium raimondii HOM05D005333 ORTHO05D005776 9.6e-07 57.0 38 65.8
Solyc12g035850.1 Solanum lycopersicum HOM05D000216 ORTHO05D004083 9.6e-07 57.0 38 68.4
Zm00001eb091680 Zea mays HOM05D001170 ORTHO05D006602 1.6e-06 56.2 43 55.8
Zm00001eb091690 Zea mays HOM05D001170 ORTHO05D006602 1.6e-06 56.2 43 55.8
Gohir.A09G245566 Gossypium hirsutum HOM05D019283 ORTHO05D005776 2.8e-06 55.5 38 65.8
Medtr4g034810 Medicago truncatula HOM05D002824 ORTHO05D007162 4.8e-06 54.7 36 69.4


User provided reference genes

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