Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G163302 Glycine max HOM05D008165 ORTHO05D007516 1.9e-40 169.9 86 100.0
Glyma.17G107600 Glycine max HOM05D008165 ORTHO05D007516 2.6e-34 149.4 84 89.3
Phvul.003G172200 Phaseolus vulgaris HOM05D013093 ORTHO05D007516 1.7e-22 110.2 86 70.9
VMungo1215G3371 Vigna mungo HOM05D013093 ORTHO05D007516 1.5e-21 107.1 87 67.8
Glyma.17G107800 Glycine max HOM05D013093 ORTHO05D007516 4.9e-17 92.0 84 60.7
Glyma.13G163100 Glycine max HOM05D013093 ORTHO05D007516 1.2e-15 87.4 81 58.0
QL02p090702 Quercus lobata HOM05D008165 ORTHO05D007516 6.0e-15 85.1 84 56.0
arahy.Tifrunner.gnm1.ann1.4JVY84 Arachis hypogaea HOM05D065918 ORTHO05D007516 2.8e-12 76.3 89 52.8
Cfa002265 Carpinus fangiana HOM05D008165 ORTHO05D007516 2.8e-12 76.3 83 51.8
Manes.14G119100 Manihot esculenta HOM05D008165 ORTHO05D007516 2.8e-12 76.3 84 53.6
Duzib168G0348 Durio zibethinus HOM05D008165 ORTHO05D007516 1.1e-11 74.3 84 46.4
Duzib187G0069 Durio zibethinus HOM05D008165 ORTHO05D007516 1.4e-11 73.9 84 47.6
Medtr4g116080 Medicago truncatula HOM05D013093 ORTHO05D007516 3.1e-11 72.8 84 50.0
Rhsim03G0252900 Rhododendron simsii HOM05D008165 ORTHO05D007516 4.0e-11 72.4 82 51.2
Duzib150G0960 Durio zibethinus HOM05D008165 ORTHO05D007516 5.3e-11 72.0 81 46.9
VMungo1215G2582 Vigna mungo HOM05D013093 ORTHO05D007516 5.3e-11 72.0 66 57.6
Psat4g034960 Pisum sativum HOM05D013093 ORTHO05D007516 9.0e-11 71.2 80 48.8
Gohir.A05G013100 Gossypium hirsutum HOM05D008165 ORTHO05D007516 1.5e-10 70.5 82 47.6
Manes.06G044400 Manihot esculenta HOM05D008165 ORTHO05D007516 1.5e-10 70.5 84 51.2
Gohir.D05G014200 Gossypium hirsutum HOM05D008165 ORTHO05D007516 9.9e-10 67.8 84 45.2
Gorai.009G014200 Gossypium raimondii HOM05D008165 ORTHO05D007516 2.2e-09 66.6 83 45.8
FAN26G1249 Fragaria x ananassa HOM05D008165 ORTHO05D007516 2.9e-09 66.2 82 46.3
Thecc.09G137200 Theobroma cacao HOM05D008165 ORTHO05D007516 3.8e-09 65.9 84 44.0
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 4.9e-09 65.5 73 49.3
RcHm_v2.0_Chr2g0087101 Rosa chinensis HOM05D008165 ORTHO05D007516 8.4e-09 64.7 82 48.8
vmacro23527 Vaccinium macrocarpon HOM05D008165 ORTHO05D007516 8.4e-09 64.7 68 52.9
Phvul.003G171100 Phaseolus vulgaris HOM05D014844 ORTHO05D016637 3.2e-08 62.8 69 49.3
FAN23G0205 Fragaria x ananassa HOM05D008165 ORTHO05D007516 5.5e-08 62.0 82 43.9
Prupe.7G252200 Prunus persica HOM05D008165 ORTHO05D007516 7.1e-08 61.6 79 41.8
Glyma.13G162400 Glycine max HOM05D014844 ORTHO05D016637 9.3e-08 61.2 67 49.3
MD02G1018600 Malus domestica HOM05D008165 ORTHO05D007516 9.3e-08 61.2 79 39.2
FvH4_1g02080 Fragaria vesca HOM05D008165 ORTHO05D007516 1.2e-07 60.8 80 46.2
FAN19G0448 Fragaria x ananassa HOM05D008165 ORTHO05D007516 1.2e-07 60.8 80 46.2
TPR.G7987 Trifolium pratense HOM05D014844 ORTHO05D016637 1.2e-07 60.8 73 49.3
Glyma.17G109000 Glycine max HOM05D014844 ORTHO05D016637 1.6e-07 60.5 69 47.8
Hma1.2p1_0343F.1_g130780 Hydrangea macrophylla HOM05D008165 ORTHO05D007516 1.0e-06 57.8 79 45.6
TPR.G7988 Trifolium pratense HOM05D013093 ORTHO05D007516 1.0e-06 57.8 58 51.7
MD15G1162600 Malus domestica HOM05D008165 ORTHO05D007516 1.3e-06 57.4 83 39.8
Phvul.003G172000 Phaseolus vulgaris HOM05D013093 ORTHO05D007516 2.3e-06 56.6 66 50.0
Lalb_Chr12g0198301 Lupinus albus HOM05D014844 ORTHO05D016637 3.9e-06 55.8 80 41.2
CsaV3_2G003340 Cucumis sativus L. HOM05D008165 ORTHO05D007516 5.1e-06 55.5 83 39.8
Lj9A703T45 Lonicera japonica HOM05D008165 ORTHO05D007516 5.1e-06 55.5 76 42.1


User provided reference genes

Program Settings